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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0307300 |
| Transcript ID | LotjaGi1g1v0307300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G10910.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72; TrEMBL-Plants: tr|I1JYB7|I1JYB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0307300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74829103..74837153) extracted from Lotus japonicus Gifu genome v1.2.
CAACAATAATAACACACAGAAAGCGACAACAAAGTAGCTTTTCTTGCTCTACAGCACAAAATTTAAGTCCCTTATTTTAT GCTCTGAGATTTTCAGAGTCATGGTTTCCATGATGTCTTTAGGATAAGAGTGGAAGGGTCATTACTCATTAGTGACTTAA GAGTTGGAGTGTTGGACATTGGGTTTGTGTGCTTCTACAACAAGTGGTTGAGTTAGTTTTCAATCTTCATCCTCCCTAAC TCTTTATGTGGTTCCCTTGTTGCCAAAGAGATCTGATGCTTCTTTGAACTTTTATCTACTGGTAATCCTGAAAGGTATTG CCATAACTCAAAAGGTCCTTGTTGTAGTATAGACCCTATAGTGTCTAGTAAAACCTTTCTTGCTTGGTTTCCTATTACCA CTGTAAATAGTTAGGTGTATTACTGTTTGTAGAGCTGGGTAAGCGGGTCAAAGTTCGCGGGCCAACCCGCATAACTCGCG ATCCGCATGGCCAATAGCCCGGTGTATGATGGTTCGCTTAAATGCGGGCCTATCTGGGCTGACTCGTTTAGCCCGCGGTT TAAATGGGTTGAACCCGCGGTTTTGCGAGCTGGTCCGCGGGCCATATAATTACATCAAAAAATTATCTTCATAGTCCATG AACTACTTTACTTTCTCTTGAATTCTTGATAGAGTGGCAAAAAAAAAACCAACTCAAGAGACCCAAGTGAAGTGAGACAC TCATCACTTACCAGACAAGTTATCTTACGTACCCTACTTCTCTTCTCTTACTCTCTTTCTTTTCTGGTTTCCCTCTCTCT CAAGTCTCTCACCACCACCATGAAATCTGGGATTAGATTTCCCACCCCATCCATTAGAATTGCCACCCCACTAAAATACT CCGGAAGATTAAGTTCTGGAGTGCTCCAGAAGTTAAACTTCCGGATCGTATCAGCTGGTTTATTTACTACGCACTTAAAT TTGACACCCTCATTTTTAAAGGACTTCGGAAGTTTATCTTTCGGAGCACTCCAGAACTTAATCTTCCGGAGTATTTTAGT GGGGTGACAATTCTAATGGATGAGGTGGGAAATCTAATTCCCTGAAATCTTCTTACTTTGGATTTGTGGAACATTTTAGA GTTTGATTATGTAATGTGGAATTTGGAGAATTGTTTTGACAATCAGTTTTTTTTCTCTATTTTTTTAGGTTTTTTTTGCT TGTTTTATTTTAAAATCTAATAGTGGCCCGCAGGCCAGTTCGTTTATCCGCAATTTAAGCGGAGCGGACGCGGGCTAACC TGAAATACAGGCTCATTTATTTGCGGGCCTACACGGGCAAGCCTGCTAACGTGCGGGCCTATGCGGGGCGGGCTTATGCG GGGCGGGCTAGACCGCATACCCAGCTCTAATTGTTTGTAAATAACCACAGTTATTAGTTACCATAGTTAGTTTTACATAG TTAACTGAGTTTGTTAATTAGCTACTCAGTGGTTAGTTAGTTTGTTAGCTAGGTGGTTAAGCTCTTAAGCTTTCCTCTTC TTATCTTCGGTATATAAACTGAAGCCATTTTACAATTCACTCATTCAATCAATTGGATCATTCAGTTTCTTTCAGTTCTT GTTTTATTCTCTGTAACAAACTCTAGGTTACAATCTTGTTATTTCCTACACCAAAATTCTTGCTTGGTTTACAATCAAGT GACCTTGTGCAAGAAGCCCTACAAAAACAGAAGCTAAAACCAGCCTCCATGAGATGTTTCAATCCCTGCAAACTTGTCAT TGGGGCTATTTGCTCCTGCATTTTCAATCTCATTTGCTCAAGCTTTTCAAGCACAGGACATAGATATATCAGCTGATATC AAAAGGGTACAAGAATTCTGAGTTTTGCTATTGGAATTTTTAATCATTTTTTAGCACAGAGAATCCATAATGGCTCTTCA TCATGGTCTACACCGTCGCCTGTTGCTTCACCATCCAAACTCAACTGGTCCAGGTAGCAGGAATTGGTCCAGGGAATCTC TCACTGGTAGCTCAGATTTTGACACCATCATGGTGTTTATCTTGGCAGGTTTGGTTTTTGCCTTTGGACTTATATTTTCT CTGGTACTCCGCTCCATTGTGCGTTGCGCTCAAAGATGTAGCCGCAGTTTTGCTTTTGAAACCCCAGATGAGGCAGTACC TCGTTTAGGCTCAAAAGAATTAAAAAAGAGTGCATTTCATCAGATCCCTAAAGTTGTTTATGGTTCAGGTAGTACAAGTA GTGCAGCCACAGACTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGTGAAAGTTAGAGTGCTACCAAAATGTAACCAT GTGTTCCATGTAAAGTGCATAGATGTATGGCTGCTCTCACACTCTTCTTGTCCTAACTGCAGAGAAGTCATTGCTTGAAC GGTAGCTGTAGCTGTAGTTGCAAGAACAACTCACCAGGTAGAGAATGCCTTAGGAGGACATGAATATTAAGCCTTTAGAT GAAGCTGTGGTCGAGGTTGGCTAATTGTAAATTCAGGGTTTTAAATTACAATCGCAGTTGCGGCTGCTTTGTGGAATTGC AGACAAATGCTGGTTGGCAACGGTGTCAATGTGGGGACAAGAAGACCTTTTACGTTGGGGCTGCAATTGCGGTCAACCGC AATTTAAAACCCTGGTAAATTGCAATCTTAATCCTTGACTGTCAAAATTCATTAAGGAAGAGTAAAGATGAATAGAAAGA AGAAAGGGATGAAAAAATGGAGACTTGTTGTTTGTACTTTGTAGGTTTGAGTTTGGAATTCTTAATGTTTAAAGTGTACT TGTACAACTGTATGAAGGATTGAAGATATATACTAGTACAGAAATAACTGATGGGTGATGATTTCAGATACTATCCTGTG TTTGTTGTCTGTGAATAGATTGAAAGGCAAGTGATGCAGAGCAAGTTGGATGCTTTGATAAAATTTTGTTTCCGGGATAT AAATTAGAAGAGGAAAAATATGTCTTTGTTAATGAGTGACTAACTTAAACTTTGTTTACTTTTTCCCCTTTTTCTCACTG AAGCCCTTGGTTAACATCTGAATTGAGCTCAAGTGGATTTAGTTCATGATCAGCATTTGGATTGTTGAACTAACTAAAAT TATTACATCACCAAAGCAGACCCTGATGCTCTTTCAAAAAATTACAATTGAATGAATCTAGCCTTAGTTAGTACTTAGGA CCGGAAAAAACCAAGTCCTGAATAAGAATCTCAAAAAGTCAGTTGGATATCTGATTCCAAATCTAAATCAGTAACTAATC CATAATCAATAAGAATAAATCAAGAGCAAGGAGAATGCTTTAATAACTAGCTTTCCATGGGGAAGAAGGCATGAGACAAA CTCTAGTGTTTTTGCAGAGATGGACAATTATTTCAGCTTTCAAAGTGAGTTCACATGGCATTCAGAGCAAACCTCTGCTC ATTTCACTTATCTATTCAAGCTTCCATACACCAACATACTTGTGCAATATCCATTTCATGAGTACTGATTCAGGATTTTG GTTTCATTTGTTGCTCTTTGCCTCTTTTGTCTGTTGTTTTCTGTTTGAACAGAGTTCTTAGCTTATACTAGAATTCTTAT TGATAATTGAATTCATTTCTTAGTATCTTAATTCTTGTGTATTTTCTTTCACACTAGTAATTCATTCATCTTCATGTCTT TCTAAACTCTAAAGTTATCTTCGTCCTTCAGTTCCTATTGGAATTCTTCAGTATAATGTCTTCAAAGAGAAAAATAAAAA GGCAGATGGATCTTCTGGCTCAAGAGGGAAATCATCCACTTCAAGAAGGAAATCTAAAGGGTAAGGGTCTTGCTCCTTCC AATCCTCATGGCATTGAATTTCTGAATGATCCCAATAATTTGTATAAGGCTCGGTATGAGACATTAGTTACTAAAGCCTT TGATGTATCCCAAGTATTTTGATGAGGAGACTTGAAGTACGTTAGGATTATGTGACAGTGTTATGTGGACGATAGATAGA ATGGGTTGGTCAGAATGGATTAAGTTCAAACGCCCTTATGAGCGTGTCATTTTAGAGTTCTCAAGTACTCTAACTCTTAA CTCTAACTCTTTGGTTGAGGAGAGGATAGCAAGAGAAAGAGAAAGAGGCGAGAAAAATAACATACATTTTGCAAGTTGTT TGATATGATAGAGATAGAAGAGAAAGAGGCGAGAAAAAAAGAATTATGGGAGTCCTCTCTCCTTTTGTTTGGTTGAGTAG AGAAGCGAAAGAGAGAAGATAACTTTTGTCTAAAATGATATTTTTATCCTAAGTATATTAATATTTATAAATAGGGTTAA ATATGTTTTTAGTCTTGTGTTTCTATCTTCGCAAGCTCTCCTCTAACAAATACACACTTACACATTATTTGTTACTGAGA GATACAAGAGTGAGACGGAGAAGAGAAAGTTAGAGTGGAGAAGTGAAAATCAAAGACGTTTGGTGAAATGATACACTTCC TTATCTACCCTTTTTATTTCACCATCTTATTCATATATCATTATACTACTAACCTATATATATTTAAGTTAGTAGTATAA TAGATTTCAAGAAAAAACTTATATATATTTAAATATTTTAAGGTAAAAATGTCATTTCCTACAAAAATAATATTCACTAT TTTCATTCTCTATAAAACCAGACAAAAGGGGAAAGTGTTCTCTAAGCACTATGTTAAATATGAAACAAATTAACCTGCTG ATCGGATTGGTTCAAGTTTGAAAAAACAATAAATTCAAGAAATGAAGTGGTTACAATTGATTTGTTCGGGTTTAACATGA AGTGAATCACGGTAAAATTAAAATCACAATAAATTACCACAAAAATTGAGGGAAAATGCTTCTGTCCACCGTGGTTGGAC TCAAGTTTTTCATAGTGTATCTAAACATGCACTTAGCTTGTGTTTAAATTCCAATTGAGTGGTATCTAAACAAACTTTCA TCAAGAAGAGTTATGTTGGGAATGACTATCCACTCATAGTCTTAGTTTAATTGTGCAACGGATAGTTGAATCAGCATAAT AACAGAAAAATTAAATCAACTAAAGATCAAACACTTCTGTAAAGCAGTAGCTTACTCTATTGTGAGTTGTAACTTCTCCT TAAACCAACATACAAAGCAAGCCAAATTTTCTTGAGTTTGTAATGCACTAACTTGAAAGCAAGGTTAATTTAATCAACCA ATGCAGCTAGCATTGGCTATAATCAGAAGTGCTATGACTAACAGGACCTCTAAATCACAATCTAACAATAATTGAGTGGA GGAGTGGGAGAAAGGTTTGGTGCTCAGAATAAGTGCTTCTTTTATTAAGCTAATTTTGATTATGTGGGATCAGGTACCAT AATTTCTTCCCCACCCTGATTCTAACATCAATAAATATTGCAACAATAATAATTAATAACACACAGAAGGAGACAACAAA GTAGCTATATTGCTTTCTTCCGTAACATAATATCTATGTCCTGTTGGTTGCCTCTGAAACTTCTTAATAAACAACAAAGC ACCACAAGACAACCACTCCTCTTAATGTCCACACTACATACCCACCCAAACCTTCTTCTGTGTCATAAATTTTGAGTCCA TTATATATAGCAAGAAGAGCAGCTGTAAGCCTGCAACCACTCCTGGTGAAAAACATCACAAGCCTGTTGAGGTAAGATAT CAATTAAACTTTCAGAGTCATGGTTTCCTGACAGATATTGATGATGTGGACCTAGGTAATGGCCTAGTGTCACTAAGGTA TATGTTAGGAAGGTCAGAAGAGTGAATACATTTAATTCTCACTAGTGATAACTGCCTTGCAGATGTGGCAGTATCTTCAG GAGAAAATAGGCTGAGCAAAGAGTGTGTGAAGGATAGAGAGTGGGAGAGAAAGGCATTCTTGTATCTAGTTCTTACTTTC TCTTTGTATTTTCCTTAAATCTGGACCTGAGTTCATCTCAGAAATCCAGATCTCTCCAACACAATTAGAATTCAATTCTA TTTCCTTGTCTAAATTGTCTTGGTACCTAACAATTGCCATAACTCAAAACATTCTTGTTGTATTGTAGTATAGACCCTAT ACTACAAAAAAAATTGATCAGGAAAGATTATTCAAAACCTTTCTTTCTTGCTTGGTTTCCTACACAAAAATTATTGCTTG GTGTGTAATCAAGCCATCAAGTCAGCCTCCCTGATATGTTTCAATACCTGCAAACTTCTCATTGGGATTATTTGCTCCTG CATTTTCAATCTCATTTGCTCAAGCTTAAGCACATGACATAGATGTATCAGCTGATATCAAAAGGGAAGATTTCTGAGTT TTGCTAATGGCTATTCATCATGGTCTACACCGCCGTCTGTTGCTTCACCATCCAAACTTAACTGGTCCAGGTAGCAGGAA TTGGTTCACTGGTGACACCAACATTCTGTTTATCTTGGCAGCTTTGCTTTTTGTACTTATATTTACTCTGGTTTTCCACT CCATTGTATGTTGCGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAAACCGCAGATGAGGCAGTAGCTCGCTTAGCCTCA AAAGAATTAAAGAAGAATGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTACAAGTAGTAGTCTTGTAGC CACAGATTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGAAAAAGTTAGAGTGCTACCAAAATGTAACCATGCGTTCC ATGTAAAGTGCATAGATGCATGGCTGCTCTCACACACTTCTTGTCCTAACTGCAGACAGTCATTGCTTCAACCTTAGCTT TAGCTGTAGTTGCTGCTGCAGGAACAACTCACCATGTACAGAATGCCTTAGGACGAGGCCTTTAGCTCAAGCTGTGGACG ATGTTGGCTAATTGTAAATTCAGGGATTAAAATTGCGGTTGCGACTGCTTTGTGGAATTGCAGATAAATGCAGGTTGGCA ACAATGCCGATGTGGGGAGTCAAAAACCTTTTACGTCAGTGCTGCAATTGCGGTCAACCACAATTTAAAACCCTGGTAAA TTGCGATTTTACTCCTTGACCGTCAGAGAGTGAAGATGCACTAGAATTCTAGAAAGAAGAAAGGGATGAAAAAATGGAGA CTAGTGGCTTTGAGTTTGGAATTCATAATGTTTAAAGTGTACTTGTATGGAATTCATAATGTTTAAACTGTATGCAGCAT GCAGGATTGAAGATATATATTAGTGTAGAAAAAACTGCTGGGTGATGATTCAGATTCTATCCTGTGTTTGTGCATGTTTT TCTGACATAAGAAATAGTGCTAAATCTTGAATGTTTGTTGTTGTGAAAGGGAAGTGATACACAACTTGTTGGATGCTTTT GTTGAAATTTTGTCACCAGAAAATGAAAGAGGAAAAATATGTCATTGTTAATGAATGACTAATTTAAACTCAGTTTACTT TTTCCCCCTTTTCTCTTTATTGCATCACTATAGCACTTGGTTCATCTGAATTGAGCTCAAGGGGACTTTGGAAGTAAAAG TTGTTAATGTATATTTAAATAGATTTTGTATATTTAGTTCATGATAAACATTTTGTTTGTTGAACTAACTAAAGTTATTA TCAAGTATCAGAATGGAATGTGTCCTGGCAATCATTGTCAGATAATCTGATATCCCAGGAAAGATTAATTGTCTATTTGC TTTGCATCCCAAAGCGGACACTGAAGCTCTTTTCCCCTTCCATGTGGGTTGCATCTTCTTTGTTGAAGGGAAACCTACAT TGTTAGGATTGTAGAACCGTCAACAACAAGATAAAGGAAGAGTAAATAGGAATATTTTTGTATATTGAAACTGAAAAATA AACAAGAAGAGAGAGAGGAATAAAGGGATACGAAAACAATTCTAACGGATAAGAAGAAGTGTTGTGAAATAGCGGTTATA GCGCTATAGCGTAGCACTTTGAGGGTTCACCGTTGTTCCATAATTTCCCGCTATTATCCGCAATTTTTCGCTATGAGAAT TGAAATAGCAGATTTTTGGCTTTATTTGAAGGAGAAATCTCTTTACAAACT
CDS sequence (LotjaGi1g1v0307300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCATCATGGTCTACACCGTCGCCTGTTGCTTCACCATCCAAACTCAACTGGTCCAGGTAGCAGGAATTGGTC CAGGGAATCTCTCACTGGTAGCTCAGATTTTGACACCATCATGGTGTTTATCTTGGCAGGTTTGGTTTTTGCCTTTGGAC TTATATTTTCTCTGGTACTCCGCTCCATTGTGCGTTGCGCTCAAAGATGTAGCCGCAGTTTTGCTTTTGAAACCCCAGAT GAGGCAGTACCTCGTTTAGGCTCAAAAGAATTAAAAAAGAGTGCATTTCATCAGATCCCTAAAGTTGTTTATGGTTCAGG TAGTACAAGTAGTGCAGCCACAGACTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGTGAAAGTTAGAGTGCTACCAA AATGTAACCATGTGTTCCATGTAAAGTGCATAGATGTATGGCTGCTCTCACACTCTTCTTGTCCTAACTGCAGAGAAGTC ATTGCTTGA
Protein sequence (LotjaGi1g1v0307300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALHHGLHRRLLLHHPNSTGPGSRNWSRESLTGSSDFDTIMVFILAGLVFAFGLIFSLVLRSIVRCAQRCSRSFAFETPD EAVPRLGSKELKKSAFHQIPKVVYGSGSTSSAATDCSICLGEFMDGVKVRVLPKCNHVFHVKCIDVWLLSHSSCPNCREV IA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 20 | 159 | 140 | 2.5E-52 | – | |
| PANTHER | 20 | 159 | 140 | 2.5E-52 | – | |
| Phobius | 40 | 64 | 25 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 65 | 162 | 98 | - | – | |
| Gene3D | 91 | 162 | 72 | 2.7E-21 | ||
| SMART | 112 | 162 | 51 | 0.0022 | – | |
| SUPERFAMILY | 115 | 161 | 47 | 8.01E-20 | – | |
| Pfam | 115 | 158 | 44 | 3.8E-14 | ||
| CDD | 115 | 158 | 44 | 1.08878E-17 | – | |
| ProSiteProfiles | 116 | 158 | 43 | 12.224 | ||
| SMART | 116 | 157 | 42 | 9.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0307300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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