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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0375100 |
Transcript ID | LotjaGi1g1v0375100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 70-kDa heat shock protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|A0A151TME6|A0A151TME6_CAJCA Heat shock cognate 70 kDa protein; Found in the gene: LotjaGi1g1v0375100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85341887..85344027) extracted from Lotus japonicus Gifu genome v1.2.
CATGATCATGTTGAAATCATAGCCAATGATCAGGGTAACAGGACTACCCCGTCCTATGTGGCATTCACCGATACTGAACG ATTGATCGGCAGTGCTGCCATGAACCAGGCCGCTATGAACCCAATGAACACCGTTTTCGGTAAGTCTCGAGTTCACTAAT TCCACTGATTCTCTTAACTTTTTTCTGAAAATGTGTTTGATTGTTAGTAAAAATTGTTGTTATACTTAGATTTTATTATT GCAGGAGAACATTGTTTGTGCGTAGCAATTGATATGGTTTTGTGTATCTTTCGGTGTGGCGTGTGCAGATGCTAAGCGTT TGATGGGTAGGAGGTTTATGGATGATTTGGTGCAGAATGACATTAAATCGTGGCCGTTCAAGGTGATGCCTGGCCCTGGT TACAGGCCAATGATTGTAGTGAATTACAAGGGGGAGGTGAAGCGGTTTTCTCCGGAGGAGATATCTTCCATGGTTCTCAC GAAGATGAGAGAGATTGCGGAGGCCTATCTTGGTACCACTGTAAAGAATGCGGTGATTAGTGTGCCCGCTTACTTCAATG ACTCTCAGCGTCAGGCTACCAAGGATGCCGGCGTCATTTCTGGCCTCAATGTGATGCGAATCATCAATGAGCCTACTGCG GCTGCCATTGCCTATGGACTCGAACTCGACAAGAAAGGCATTGCCACCAGCGCTAAGAGGAACGTTCTCATTTTCGACCT TGGTGGTGGGGCTTTTGATGTCTCGCTTGTTACCATGGCGGAAGGTAGCTTCGAGGTGAAAGCCACCGCGGGTGACACTC ACTTTGGGGGTGAGGAATTTGACAACAGAATTGTGAACCATTTTGTTGAGGAATTCAGGTGGAAGAACAATAAGGACATT AGCGGAGATGCCACCGCTGTTAGGAAGTTGAAGACCGCATGGGAGAAGGCGAAGAGGATACTATCATTCACTGATGAAAC CACCATTGAGATTGATTCTCTGTATGAAGGCATTGAGTTTTCCACAAACATCTCTCGTGCGCGGTTCGAAGAGCTGAACA AGGACTTGTTCAGGATGTGTATGGAGCGTGTAGTGATGTGTTTGAAAGATGCAAAGATGGAAAAGAGAAAGGTGGACGAT GTTGTTCTTGTTGGCGGATCCACGAGGATGCCAAAGGTTCAGCAGTTATTGCAAGAGTTCTTCAATGGCAAGGAAGTTTG CAAGAGCATCATTAACCCTGAGGAGGCTGTTGCCTATGGTGCTTCTGTCCAGGCTGCAATTTTGAGTGGAAAAAAGGGAC TGCAGGCTCTTAAATTGCTTGATGTAACTCCACTCTGCATTGGATTTGAGACTGGTGATGGGGATATGCAAGTGTTGATT CCCAGAAATACTAAAATCCCCATTAGGAAGGAGGAGGTTTTTACAACCTCCGCCGATAACCAACCCGGTGTGCTGATTCC GGTTTTTGAGGAGGGTGACCGGATAGTTAGAACTCATGGTCGTCACTACAACAACTTGCTTGGCAAGTTTGTGGTGTCCG GACTCCCTTATTTACCAAAGGGTGCTCCAAAGCTCAATGTTTGCTTCGACATCAATGCTGATGGTATCTTGAGTGTCTCC GCAGAGGACAGAACCATAGGAATGAAGAACATGCTGACCAGAGAGAGGAACAAGATTAGAATCAGCAACGACAAGGTGAG GCTTTCGAAGGAGGCGATAGAGAAGATGGTGAAGGAAGGTGAGAAGTACAGAGAGAGAGTAGAGGCGAAGAATGCTCTAG AGAATTATGCGGATAACGTGAGGAAGATGATCAAGGATTATGATATGATTGGCTCAGAGTTTTCAGCTGATGATAAGAAG AGGATTGAAGATGCAATTGAGCAGGCTATGCAATGGCTTGATGGGAACAAACTTGCCAAGACTAATGAATTTAAGGAGAG GAAGAAGGAGGTGGAGAGTATCTGCAACCCCATCATCTTAGCTAAGATGAATCAAATGTTTGATTAAGCAGACAGAACAT CGATCACATCAGCGTTTGATTTTGCAAGACACATTTGGTTTGGGATTAAATACTAGCTACATCATGTCTATATATAGCAT ACTTTTTCTCTGTTTTTTCAGTATACTGTACATCGTTGTTTCACCAATTACTCAAATAAAA
CDS sequence (LotjaGi1g1v0375100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGGAGGTTTATGGATGATTTGGTGCAGAATGACATTAAATCGTGGCCGTTCAAGGTGATGCCTGGCCCTGGTTA CAGGCCAATGATTGTAGTGAATTACAAGGGGGAGGTGAAGCGGTTTTCTCCGGAGGAGATATCTTCCATGGTTCTCACGA AGATGAGAGAGATTGCGGAGGCCTATCTTGGTACCACTGTAAAGAATGCGGTGATTAGTGTGCCCGCTTACTTCAATGAC TCTCAGCGTCAGGCTACCAAGGATGCCGGCGTCATTTCTGGCCTCAATGTGATGCGAATCATCAATGAGCCTACTGCGGC TGCCATTGCCTATGGACTCGAACTCGACAAGAAAGGCATTGCCACCAGCGCTAAGAGGAACGTTCTCATTTTCGACCTTG GTGGTGGGGCTTTTGATGTCTCGCTTGTTACCATGGCGGAAGGTAGCTTCGAGGTGAAAGCCACCGCGGGTGACACTCAC TTTGGGGGTGAGGAATTTGACAACAGAATTGTGAACCATTTTGTTGAGGAATTCAGGTGGAAGAACAATAAGGACATTAG CGGAGATGCCACCGCTGTTAGGAAGTTGAAGACCGCATGGGAGAAGGCGAAGAGGATACTATCATTCACTGATGAAACCA CCATTGAGATTGATTCTCTGTATGAAGGCATTGAGTTTTCCACAAACATCTCTCGTGCGCGGTTCGAAGAGCTGAACAAG GACTTGTTCAGGATGTGTATGGAGCGTGTAGTGATGTGTTTGAAAGATGCAAAGATGGAAAAGAGAAAGGTGGACGATGT TGTTCTTGTTGGCGGATCCACGAGGATGCCAAAGGTTCAGCAGTTATTGCAAGAGTTCTTCAATGGCAAGGAAGTTTGCA AGAGCATCATTAACCCTGAGGAGGCTGTTGCCTATGGTGCTTCTGTCCAGGCTGCAATTTTGAGTGGAAAAAAGGGACTG CAGGCTCTTAAATTGCTTGATGTAACTCCACTCTGCATTGGATTTGAGACTGGTGATGGGGATATGCAAGTGTTGATTCC CAGAAATACTAAAATCCCCATTAGGAAGGAGGAGGTTTTTACAACCTCCGCCGATAACCAACCCGGTGTGCTGATTCCGG TTTTTGAGGAGGGTGACCGGATAGTTAGAACTCATGGTCGTCACTACAACAACTTGCTTGGCAAGTTTGTGGTGTCCGGA CTCCCTTATTTACCAAAGGGTGCTCCAAAGCTCAATGTTTGCTTCGACATCAATGCTGATGGTATCTTGAGTGTCTCCGC AGAGGACAGAACCATAGGAATGAAGAACATGCTGACCAGAGAGAGGAACAAGATTAGAATCAGCAACGACAAGGTGAGGC TTTCGAAGGAGGCGATAGAGAAGATGGTGAAGGAAGGTGAGAAGTACAGAGAGAGAGTAGAGGCGAAGAATGCTCTAGAG AATTATGCGGATAACGTGAGGAAGATGATCAAGGATTATGATATGATTGGCTCAGAGTTTTCAGCTGATGATAAGAAGAG GATTGAAGATGCAATTGAGCAGGCTATGCAATGGCTTGATGGGAACAAACTTGCCAAGACTAATGAATTTAAGGAGAGGA AGAAGGAGGTGGAGAGTATCTGCAACCCCATCATCTTAGCTAAGATGAATCAAATGTTTGATTAA
Protein sequence (LotjaGi1g1v0375100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRFMDDLVQNDIKSWPFKVMPGPGYRPMIVVNYKGEVKRFSPEEISSMVLTKMREIAEAYLGTTVKNAVISVPAYFND SQRQATKDAGVISGLNVMRIINEPTAAAIAYGLELDKKGIATSAKRNVLIFDLGGGAFDVSLVTMAEGSFEVKATAGDTH FGGEEFDNRIVNHFVEEFRWKNNKDISGDATAVRKLKTAWEKAKRILSFTDETTIEIDSLYEGIEFSTNISRARFEELNK DLFRMCMERVVMCLKDAKMEKRKVDDVVLVGGSTRMPKVQQLLQEFFNGKEVCKSIINPEEAVAYGASVQAAILSGKKGL QALKLLDVTPLCIGFETGDGDMQVLIPRNTKIPIRKEEVFTTSADNQPGVLIPVFEEGDRIVRTHGRHYNNLLGKFVVSG LPYLPKGAPKLNVCFDINADGILSVSAEDRTIGMKNMLTRERNKIRISNDKVRLSKEAIEKMVKEGEKYRERVEAKNALE NYADNVRKMIKDYDMIGSEFSADDKKRIEDAIEQAMQWLDGNKLAKTNEFKERKKEVESICNPIILAKMNQMFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 42 | 42 | 4.1E-124 | – | |
SUPERFAMILY | 1 | 114 | 114 | 1.52E-35 | ||
Pfam | 1 | 545 | 545 | 3.6E-173 | ||
PANTHER | 1 | 552 | 552 | 8.4E-258 | ||
PANTHER | 1 | 552 | 552 | 8.4E-258 | – | |
Gene3D | 43 | 311 | 269 | 4.1E-124 | – | |
PRINTS | 70 | 90 | 21 | 2.9E-49 | – | |
Gene3D | 118 | 299 | 182 | 4.1E-124 | – | |
SUPERFAMILY | 125 | 316 | 192 | 4.57E-58 | ||
ProSitePatterns | 130 | 143 | 14 | - | ||
PRINTS | 136 | 146 | 11 | 2.9E-49 | – | |
Gene3D | 162 | 239 | 78 | 4.1E-124 | – | |
PRINTS | 264 | 280 | 17 | 2.9E-49 | – | |
ProSitePatterns | 267 | 281 | 15 | - | ||
PRINTS | 297 | 317 | 21 | 2.9E-49 | – | |
Gene3D | 312 | 444 | 133 | 1.7E-36 | ||
PRINTS | 322 | 341 | 20 | 2.9E-49 | – | |
SUPERFAMILY | 322 | 480 | 159 | 3.53E-39 | ||
PRINTS | 408 | 424 | 17 | 2.9E-49 | – | |
Gene3D | 454 | 551 | 98 | 3.0E-24 | ||
Coils | 472 | 492 | 21 | - | – | |
SUPERFAMILY | 474 | 548 | 75 | 9.03E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0375100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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