Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0375100 |
| Transcript ID | LotjaGi1g1v0375100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70-kDa heat shock protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|A0A151TME6|A0A151TME6_CAJCA Heat shock cognate 70 kDa protein; Found in the gene: LotjaGi1g1v0375100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85341887..85344027) extracted from Lotus japonicus Gifu genome v1.2.
CATGATCATGTTGAAATCATAGCCAATGATCAGGGTAACAGGACTACCCCGTCCTATGTGGCATTCACCGATACTGAACG ATTGATCGGCAGTGCTGCCATGAACCAGGCCGCTATGAACCCAATGAACACCGTTTTCGGTAAGTCTCGAGTTCACTAAT TCCACTGATTCTCTTAACTTTTTTCTGAAAATGTGTTTGATTGTTAGTAAAAATTGTTGTTATACTTAGATTTTATTATT GCAGGAGAACATTGTTTGTGCGTAGCAATTGATATGGTTTTGTGTATCTTTCGGTGTGGCGTGTGCAGATGCTAAGCGTT TGATGGGTAGGAGGTTTATGGATGATTTGGTGCAGAATGACATTAAATCGTGGCCGTTCAAGGTGATGCCTGGCCCTGGT TACAGGCCAATGATTGTAGTGAATTACAAGGGGGAGGTGAAGCGGTTTTCTCCGGAGGAGATATCTTCCATGGTTCTCAC GAAGATGAGAGAGATTGCGGAGGCCTATCTTGGTACCACTGTAAAGAATGCGGTGATTAGTGTGCCCGCTTACTTCAATG ACTCTCAGCGTCAGGCTACCAAGGATGCCGGCGTCATTTCTGGCCTCAATGTGATGCGAATCATCAATGAGCCTACTGCG GCTGCCATTGCCTATGGACTCGAACTCGACAAGAAAGGCATTGCCACCAGCGCTAAGAGGAACGTTCTCATTTTCGACCT TGGTGGTGGGGCTTTTGATGTCTCGCTTGTTACCATGGCGGAAGGTAGCTTCGAGGTGAAAGCCACCGCGGGTGACACTC ACTTTGGGGGTGAGGAATTTGACAACAGAATTGTGAACCATTTTGTTGAGGAATTCAGGTGGAAGAACAATAAGGACATT AGCGGAGATGCCACCGCTGTTAGGAAGTTGAAGACCGCATGGGAGAAGGCGAAGAGGATACTATCATTCACTGATGAAAC CACCATTGAGATTGATTCTCTGTATGAAGGCATTGAGTTTTCCACAAACATCTCTCGTGCGCGGTTCGAAGAGCTGAACA AGGACTTGTTCAGGATGTGTATGGAGCGTGTAGTGATGTGTTTGAAAGATGCAAAGATGGAAAAGAGAAAGGTGGACGAT GTTGTTCTTGTTGGCGGATCCACGAGGATGCCAAAGGTTCAGCAGTTATTGCAAGAGTTCTTCAATGGCAAGGAAGTTTG CAAGAGCATCATTAACCCTGAGGAGGCTGTTGCCTATGGTGCTTCTGTCCAGGCTGCAATTTTGAGTGGAAAAAAGGGAC TGCAGGCTCTTAAATTGCTTGATGTAACTCCACTCTGCATTGGATTTGAGACTGGTGATGGGGATATGCAAGTGTTGATT CCCAGAAATACTAAAATCCCCATTAGGAAGGAGGAGGTTTTTACAACCTCCGCCGATAACCAACCCGGTGTGCTGATTCC GGTTTTTGAGGAGGGTGACCGGATAGTTAGAACTCATGGTCGTCACTACAACAACTTGCTTGGCAAGTTTGTGGTGTCCG GACTCCCTTATTTACCAAAGGGTGCTCCAAAGCTCAATGTTTGCTTCGACATCAATGCTGATGGTATCTTGAGTGTCTCC GCAGAGGACAGAACCATAGGAATGAAGAACATGCTGACCAGAGAGAGGAACAAGATTAGAATCAGCAACGACAAGGTGAG GCTTTCGAAGGAGGCGATAGAGAAGATGGTGAAGGAAGGTGAGAAGTACAGAGAGAGAGTAGAGGCGAAGAATGCTCTAG AGAATTATGCGGATAACGTGAGGAAGATGATCAAGGATTATGATATGATTGGCTCAGAGTTTTCAGCTGATGATAAGAAG AGGATTGAAGATGCAATTGAGCAGGCTATGCAATGGCTTGATGGGAACAAACTTGCCAAGACTAATGAATTTAAGGAGAG GAAGAAGGAGGTGGAGAGTATCTGCAACCCCATCATCTTAGCTAAGATGAATCAAATGTTTGATTAAGCAGACAGAACAT CGATCACATCAGCGTTTGATTTTGCAAGACACATTTGGTTTGGGATTAAATACTAGCTACATCATGTCTATATATAGCAT ACTTTTTCTCTGTTTTTTCAGTATACTGTACATCGTTGTTTCACCAATTACTCAAATAAAA
CDS sequence (LotjaGi1g1v0375100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGGAGGTTTATGGATGATTTGGTGCAGAATGACATTAAATCGTGGCCGTTCAAGGTGATGCCTGGCCCTGGTTA CAGGCCAATGATTGTAGTGAATTACAAGGGGGAGGTGAAGCGGTTTTCTCCGGAGGAGATATCTTCCATGGTTCTCACGA AGATGAGAGAGATTGCGGAGGCCTATCTTGGTACCACTGTAAAGAATGCGGTGATTAGTGTGCCCGCTTACTTCAATGAC TCTCAGCGTCAGGCTACCAAGGATGCCGGCGTCATTTCTGGCCTCAATGTGATGCGAATCATCAATGAGCCTACTGCGGC TGCCATTGCCTATGGACTCGAACTCGACAAGAAAGGCATTGCCACCAGCGCTAAGAGGAACGTTCTCATTTTCGACCTTG GTGGTGGGGCTTTTGATGTCTCGCTTGTTACCATGGCGGAAGGTAGCTTCGAGGTGAAAGCCACCGCGGGTGACACTCAC TTTGGGGGTGAGGAATTTGACAACAGAATTGTGAACCATTTTGTTGAGGAATTCAGGTGGAAGAACAATAAGGACATTAG CGGAGATGCCACCGCTGTTAGGAAGTTGAAGACCGCATGGGAGAAGGCGAAGAGGATACTATCATTCACTGATGAAACCA CCATTGAGATTGATTCTCTGTATGAAGGCATTGAGTTTTCCACAAACATCTCTCGTGCGCGGTTCGAAGAGCTGAACAAG GACTTGTTCAGGATGTGTATGGAGCGTGTAGTGATGTGTTTGAAAGATGCAAAGATGGAAAAGAGAAAGGTGGACGATGT TGTTCTTGTTGGCGGATCCACGAGGATGCCAAAGGTTCAGCAGTTATTGCAAGAGTTCTTCAATGGCAAGGAAGTTTGCA AGAGCATCATTAACCCTGAGGAGGCTGTTGCCTATGGTGCTTCTGTCCAGGCTGCAATTTTGAGTGGAAAAAAGGGACTG CAGGCTCTTAAATTGCTTGATGTAACTCCACTCTGCATTGGATTTGAGACTGGTGATGGGGATATGCAAGTGTTGATTCC CAGAAATACTAAAATCCCCATTAGGAAGGAGGAGGTTTTTACAACCTCCGCCGATAACCAACCCGGTGTGCTGATTCCGG TTTTTGAGGAGGGTGACCGGATAGTTAGAACTCATGGTCGTCACTACAACAACTTGCTTGGCAAGTTTGTGGTGTCCGGA CTCCCTTATTTACCAAAGGGTGCTCCAAAGCTCAATGTTTGCTTCGACATCAATGCTGATGGTATCTTGAGTGTCTCCGC AGAGGACAGAACCATAGGAATGAAGAACATGCTGACCAGAGAGAGGAACAAGATTAGAATCAGCAACGACAAGGTGAGGC TTTCGAAGGAGGCGATAGAGAAGATGGTGAAGGAAGGTGAGAAGTACAGAGAGAGAGTAGAGGCGAAGAATGCTCTAGAG AATTATGCGGATAACGTGAGGAAGATGATCAAGGATTATGATATGATTGGCTCAGAGTTTTCAGCTGATGATAAGAAGAG GATTGAAGATGCAATTGAGCAGGCTATGCAATGGCTTGATGGGAACAAACTTGCCAAGACTAATGAATTTAAGGAGAGGA AGAAGGAGGTGGAGAGTATCTGCAACCCCATCATCTTAGCTAAGATGAATCAAATGTTTGATTAA
Protein sequence (LotjaGi1g1v0375100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRFMDDLVQNDIKSWPFKVMPGPGYRPMIVVNYKGEVKRFSPEEISSMVLTKMREIAEAYLGTTVKNAVISVPAYFND SQRQATKDAGVISGLNVMRIINEPTAAAIAYGLELDKKGIATSAKRNVLIFDLGGGAFDVSLVTMAEGSFEVKATAGDTH FGGEEFDNRIVNHFVEEFRWKNNKDISGDATAVRKLKTAWEKAKRILSFTDETTIEIDSLYEGIEFSTNISRARFEELNK DLFRMCMERVVMCLKDAKMEKRKVDDVVLVGGSTRMPKVQQLLQEFFNGKEVCKSIINPEEAVAYGASVQAAILSGKKGL QALKLLDVTPLCIGFETGDGDMQVLIPRNTKIPIRKEEVFTTSADNQPGVLIPVFEEGDRIVRTHGRHYNNLLGKFVVSG LPYLPKGAPKLNVCFDINADGILSVSAEDRTIGMKNMLTRERNKIRISNDKVRLSKEAIEKMVKEGEKYRERVEAKNALE NYADNVRKMIKDYDMIGSEFSADDKKRIEDAIEQAMQWLDGNKLAKTNEFKERKKEVESICNPIILAKMNQMFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 42 | 42 | 4.1E-124 | – | |
| SUPERFAMILY | 1 | 114 | 114 | 1.52E-35 | ||
| Pfam | 1 | 545 | 545 | 3.6E-173 | ||
| PANTHER | 1 | 552 | 552 | 8.4E-258 | ||
| PANTHER | 1 | 552 | 552 | 8.4E-258 | – | |
| Gene3D | 43 | 311 | 269 | 4.1E-124 | – | |
| PRINTS | 70 | 90 | 21 | 2.9E-49 | – | |
| Gene3D | 118 | 299 | 182 | 4.1E-124 | – | |
| SUPERFAMILY | 125 | 316 | 192 | 4.57E-58 | ||
| ProSitePatterns | 130 | 143 | 14 | - | ||
| PRINTS | 136 | 146 | 11 | 2.9E-49 | – | |
| Gene3D | 162 | 239 | 78 | 4.1E-124 | – | |
| PRINTS | 264 | 280 | 17 | 2.9E-49 | – | |
| ProSitePatterns | 267 | 281 | 15 | - | ||
| PRINTS | 297 | 317 | 21 | 2.9E-49 | – | |
| Gene3D | 312 | 444 | 133 | 1.7E-36 | ||
| PRINTS | 322 | 341 | 20 | 2.9E-49 | – | |
| SUPERFAMILY | 322 | 480 | 159 | 3.53E-39 | ||
| PRINTS | 408 | 424 | 17 | 2.9E-49 | – | |
| Gene3D | 454 | 551 | 98 | 3.0E-24 | ||
| Coils | 472 | 492 | 21 | - | – | |
| SUPERFAMILY | 474 | 548 | 75 | 9.03E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0375100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…