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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384400 |
| Transcript ID | LotjaGi1g1v0384400.3 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A1J7GBI8|A0A1J7GBI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86774282..86778920) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGC CGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGTAAGCTATTTCTTGTTTTTTCCTGTGTCTTGATTTGTTTCGTGAAA TTATATTAGTTTAATGGTGCGTTTCTGTTAACAGCTTAATTAAGCTCGCATAAGCACTTATTCATAAGCTAATTTGAGAA TCTGATTGAAATAATCTGAACATAGGTGGTAGGGAAGCAAAGCATATACAAACAGTTTATGAAAATAAGCTCAAAGCAGT TTATAGATAAGCCATAATATGTATAAGTGCTTATGCTAACTCGTTATGTCGAAACAATTGGACTTTAGTGCACAATATGT TGGTTTAGGACTTAAACATTTGATTATTTTTTATATAATTAATCTCTCTTTCATTTGTTTTATGTAGGGGCTATGTTGGA ATCCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCC TTCTGAAGGCAAACTATCCAGCTATCTTAATTTACATTTTTTGTTGTTGTATAGGTTGCAAATAATATGATGTTTTTGTG ATTCTAAAGATTTTATGGTTATTTAAATTATTAGTATTTCAGAATAAGCAAATGCTAATGCCCTTTGTGCACTAATTGAG AAGACTTGAAAGTATTTTTCCAGAAATATTGATCACACAGAAAATAGTTAACTAATGCATCTTGCATGTCTGACCATATT ATCATTAACTATGAAGCATGGACATGGGGACTGGACATTTTCACGACAGATCTTCAATGTTTGAAATATATAGGTCCCTG AGGCATTGCTGCATAAATTCATGTGTATATGTGTGCGTATGTGTGCATTTGTATTTGTTGATATATGTATGTTTGCATGT GTTTGTATAGGGACTTCATTAGTTGCCATTGCCAGCATTTGAGGAGTTAAACTCGAGTCTTGGCCCATTCATGCTCATGC ATGGTTGTATTGTCAAGTTCAGCTCCTCTCACTAAATTTGTGCTGGTGTCCTTGTTGGTATTAGATATGTGTTGGACACT CCAACATCTCAAAAAGTGTCCGTGACATACACATATAGAAGCCATGTAGTTTTGTATGATGCTATGCTATTTAAGTATTT CTAAAATTTGATTAACTGAACTTATAACTTTGTTTGACGTTTACTTTACAGGTAATACTTCTTCGACAATCTTGTTTTGG AGAACTTACATGCTTTGGTAATGGTATCAAATCAGATTAAATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCT TCGGCCCTGTTTTCTTTGCTTTATCATCAGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGC CAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGT TTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTACCAGGTAGTTATTTGGGGTTCAGTGCAAGAAAGTTAGGGAA TTTAGTATTATAGTTGCTCTTGATTTAAGATGTGCAATCTCTTCTGTGCAGATATGCCACGAGTTTGAGAGGTTTAGCAC CTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGT GCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGG CATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGGTAATGTTTCTTTGGTGAGTTAAATTATTGTTGGTCT TTTTGTATTTTTCCAATCTGATTATTCTTGTTCCTATTATGCTTCCTGCAGACATGAGGAAAGATGTTCAAGACATTTTC AAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATT TATGCAAGATGTAATGTCTCATGGCCAGTACTACTTGAATTAGAATTCTCTTTTTCATACTGCCCGCATTCCTTGGGAAT TTTTTAGATGTTTAGAATGATGTGGTTTTATCAGCTTTTACTTCTTATTGGAGTTCTGTTGGATGGTGTGTTCTATCCAT TCTATTTTTACTGAAACACCTGGCTGGCAGGCGGAGCGTGGTTGGGTATAGATTGGACTAGGAACATTTGTGTGCCATGT TTCAGTAGTTCTCCTGATTGTCGCCATATGTATTTTCTCTTCTCTCTTTAGGTTCATGTTGGAAGTTAGTTTTGTCTCTA TAATCAGGTTGGTGTCAAGTATGGGTTTTTCTGTGTGTTGGGATTTTTTTTCCTTTAGAGAGGGGTAGGGTTGTTAGGTT ATTCTGGGTTTGTTGCTGCCAGTTTTCTTAGTGAGTGTCAAGTGTTAGTGGCACTTGCTTGGCGTGGCCAAAAAAGTTTC TGCAAGGAGACAAAACAGATGCAAAGAAACTATGATTCAGGAGATCTGCATCCATCATTCATTACGTTCTGGATTCCATT AGCTTGTGGAAGGACCCTAATTTGATTCACTGAAATTTGTTCCTTTCAGCCTATGGAAATTTATGTCGATGATGAGGCCA AGTTAACCCTTCATGGACTTGTGCAGGTATGGTTTTATCATTTCTTTTTATTTCTGCCCTTTTAAATGTGTCATTATAGC TTACCTAGATGCTGGATGTGGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGA TGCACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGT GCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTATGTTCCATGATACCTCAATGGGTGCTTT TATATTTTTTTAGTTCATGCTTTGATTGATGATTTGGTTGGCCAGTTTCATTTGGTGTGTTGTTGTTCTTTGTTTCAAAC TTTCAATTTTGTTTACTTGTGTTGTGTTCTTTGTTTGTAAGCTTTCAATCTGATATTAATTTTTATTGGAGTAATTTCAA TTATCTTTTGGGCTGTGGGGCACAGTACGGGTGCAGCTTCCCTTTTAAGAGGGGAACACTGATTTTCAGTTTTAGTCTTT TTTTGTTGTGAATGGTGACATTTATTTTTTTGATACAATTTATGATGTTGGAATCCGCTATAGTATTATATGCTTGAAAG GCTGGAAAGAAAACTATAGATCAGATCTGTGGATTGTATATGGAGCTGTGCAGAAAAAAGCACTGATCTTGCACTGACAT ATGACAATAATGGCTTAGAAAGCTGCCTTTGCTTGTTCCTTTTAATATATGCACTATTGATCTGGTATCAGTTATCTACA CTTTTAACTGTCCAGAGATTGTATCTGCAATGGTATATTTAATAACAGCAGAATTAACAAATTTGTGAAAGTCTGAATGA ACTTAAGTTCTAACTTCCAAGCTGCCTTTGTTAACAAGTTGGTGATTATGTAAGTTGGGAATTTCTGAATAGAATTGCTG GAGTGGGTGATGAATGGGTTTGTTCAATCGTCTCTTTATGGAGTATCTTTGGTTTTGATGTTCTAAAGTGTTAGCAAATG CCACTTTTGATGTGAAACAAGACACATGATGACTCTTTGGAAAAAAACTAATTGTATGTATGATTAATGAAGTTGAGAGA AGGGGTGCTTCTCTTAGTGTCTCCTTTCATTTAGTATTTACATAGTTCGCTGATAATAGTCTTCGATTTCTCCATTTTTC CATTGAAGTATGTTAATATTGGTTACTGATTTCTATGTTAAAGATATCAGCCAATTTTATGTTGGCTACCGTAGGCGTAA CACAACTTTTCTTCTTTACCCGGACCAGCTATGACAGCATAGGCGGGGTTTTTAATTTGCTGTTTTGTTATTGTTTTTTT TTCCTGGTCACACTGTAAAGAAGCTGTTCTCTGAATCAATTATGTTTGTGTATGATCTTGGTTTATGTATCTGCAGGTTA AAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGA GCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTACACAGGGTATGGTTGAACAAAACCT GATAAGTTACATCTTTTAGCAATTTCTTGTAAATAATTTTAACTTGGGGTAGTCTAACTTTTTTTGGAGCGAGCGTACAG GTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAA CAATGTAGGGAGCTATTTTTGTTGGATTTCGTTGACATATTTGGCTGTTTCCATTAACATTTTTTATTTGGCTGTTGTGA TTTTCAGGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGA
CDS sequence (LotjaGi1g1v0384400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGC CGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTTTCTTCTCA AACCAGAGCTTCTTAGGGGACTTCCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCT GTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGA GTTAGCTTACCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTG GGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTT GCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATC ACTAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACAC TCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTA ACCCTTCATGGACTTGTGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGC ACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCA ACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCAT ACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACAT GCCTGATTCTGCTGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTG TTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAG ATTGATACCTCTACCTACAGTATGTGA
Protein sequence (LotjaGi1g1v0384400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEIKDEGYEEELLDYEEEEDKALDSAGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRGLPILGMDVICQAKSGMGKTA VFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRIL ALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKL TLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGH TRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQ IDTSTYSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 60 | 52 | 9.6E-214 | – | |
| PANTHER | 9 | 60 | 52 | 9.6E-214 | – | |
| Gene3D | 44 | 234 | 191 | 2.2E-53 | – | |
| CDD | 45 | 234 | 190 | 6.40162E-136 | – | |
| SMART | 49 | 248 | 200 | 8.1E-47 | ||
| ProSiteProfiles | 59 | 232 | 174 | 24.612 | ||
| PANTHER | 62 | 393 | 332 | 9.6E-214 | – | |
| PANTHER | 62 | 393 | 332 | 9.6E-214 | – | |
| Pfam | 64 | 218 | 155 | 2.9E-34 | ||
| SUPERFAMILY | 97 | 376 | 280 | 1.34E-68 | ||
| ProSiteProfiles | 244 | 405 | 162 | 22.096 | ||
| CDD | 245 | 374 | 130 | 1.03792E-57 | – | |
| Gene3D | 246 | 408 | 163 | 9.5E-53 | – | |
| Pfam | 258 | 365 | 108 | 6.0E-28 | ||
| SMART | 284 | 365 | 82 | 4.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0384400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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