Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

cd17950

Source: CDD

Description

DEADc_DDX39

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 19

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0384400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A151RLG2\|A0A151RLG2_CAJCA DEAD-box ATP-dependent RNA helicase 56; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF679 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00487 SM00490 SSF52540 SignalP-noTM cd17950 cd18787	22
LotjaGi1g1v0384400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|I1JUD5\|I1JUD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF679 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi1g1v0384400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GBI8\|A0A1J7GBI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF679 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi1g1v0384400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GBI8\|A0A1J7GBI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF679 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi1g1v0384400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GBI8\|A0A1J7GBI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF679 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi1g1v0384400.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A0L9UGX2\|A0A0L9UGX2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF671 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi1g1v0384400.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A151RLG2\|A0A151RLG2_CAJCA DEAD-box ATP-dependent RNA helicase 56; Found in the gene: LotjaGi1g1v0384400	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF679 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00487 SM00490 SSF52540 SignalP-noTM cd17950 cd18787	22
LotjaGi3g1v0357800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GWF5\|A0A1J7GWF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF671 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi3g1v0357800.12 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GWF5\|A0A1J7GWF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi3g1v0357800.13 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A072UHT1\|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi3g1v0357800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A0R0J4W7\|A0A0R0J4W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi3g1v0357800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A072UHT1\|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi3g1v0357800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A0R0J4W7\|A0A0R0J4W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi3g1v0357800.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GWF5\|A0A1J7GWF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF671 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi3g1v0357800.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A0R0J4W7\|A0A0R0J4W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR014014 IPR027417 PF00270 PF00271 PS51192 PS51194 PS51195 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	18
LotjaGi3g1v0357800.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A072UHT1\|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi3g1v0357800.8 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A1J7GWF5\|A0A1J7GWF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0357800	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 TMhelix TRANSMEMBRANE cd17950 cd18787	20
LotjaGi3g1v0357800.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A072UHT1\|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800	Domains G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 PF00270 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF675 SM00487 SM00490 SSF52540 cd17950 cd18787	16
LotjaGi5g1v0060600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp\|Q56XG6\|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr\|A0A151RLG2\|A0A151RLG2_CAJCA DEAD-box ATP-dependent RNA helicase 56; Found in the gene: LotjaGi5g1v0060600	Domains G3DSA:3.40.50.300 IPR001650 IPR014001 IPR027417 PF00271 PS51192 PS51194 PTHR24031 PTHR24031:SF679 SM00490 SSF52540 cd17950 cd18787	13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18787	CDD	1	5.26