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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0393500 |
Transcript ID | LotjaGi1g1v0393500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87802086..87806390) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAAAATTGCCCCTTTAATGAGAACACTAACAAATCAGGTTTCTCAAAAAAATTATATATATAGAAAAAATCTTTTCA ATATGAAATTAATTTCACTTTTCCATTCCTCTTCTTGAACCCTCACTCTCACTCTCTATTGATCATTCATATTCTTCCAC CTTCGTACTCCTCAGTCTCTGGGGAACAGAAAAAGAAAGCAAACCGCACCAGAGAGCTTCAGAAGAATCATCAATGGAGG TTTCATCATCGTCATCATCTGCAATCGCACAACAAACATGGGAGCTCGAGAACAACATAATCCCGATGGACACTCCTTCA GACGATTCCATCTTCTACTACGACGAAGCTGGCCAGAACGAGTTCCAGCGTGAGAAGCCATGGGCAAACGACCCTCACTA CTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTTCTCAAGATGGTTGTTCACGCGCGCTCCGGCGGCACCATCGAAGTCA TGGGCCTCATGCAAGGAAAAACCGACGCCGATTCGATCATCGTCATGGATGCTTTCGCTTTGCCCGTTGAAGGCACTGAA ACCCGTGTCAATGCCCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGACCAATAAGCAGGTTCGTTAAACCCT AACCCTAACCCTAATTTTAATCCCATTTTGATTTTGGCCCTAATTGTTACCTGATTAGGTGAATTAGGTTTACAAATCAA TCGGATTTTTAAACTGGTTCCTTAAACCCTAACCCTAACCCTAACCTAAATCCCATTTTAGTTTTTGCTCTAATTGTTAC TTGATTAGGTGAATTAGGTTTTAAAATCTGATTTTGTGATGTGTTTTCAGGCTGGGAGGTTAGAAAACGTTGTGGGGTGG TACCATTCTCATCCGGGTTACGGTTGTTGGCTTTCGGGTATCGATGTTTCTACGCAGATGCTGAATCAGCAGTTTCAGGA GCCTTTTCTTGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAGGTTGAGATTGGGGCTTTCAGGACTTACC CTGAAGGTTATAAGCCTCCAGATGAGCCTATTTCTGAGTATCAGACCATTCCTTTGAATAAAATTGAAGACTTTGGTGTC CATTGTAAACAGGTTATTCTTCTCTCTTTGCCTTTTAATCTAACCCCCATTTTCCCCTATTTTTTTGTTTAAGCTTCATT TGTGTGGTTTTGCAGTATTATTCCTTGGATATCACTTACTTCAAGTCCTCCCTTGATTCACACCTGTTGGATTTGCTGTG GAACAAATATTGGGTGAATACACTGTCATCTTCTCCTCTGTTGGGTAATGGAGATTACGTTGCTGGACAAATCTCGGATT TAGGTACGTACTCCCCTTCAGTGGCTTCCTTTTACTGCAATGATAGATATGCTTTTGAATTTGGTTGTGCAGTTTGTTGT GAACATGAAAGTAGACTAGCATGGTTTCATATTTATCTTATAAATAGTCCTATCGATGGTATATTTTAAAACTATGAGTA ACACAATTGGATAATTCCTATTGCAGCTGAAAAGTTAGAGCAAGCAGAGAATCAGTTGGCGCACTCACGCTTTGGGTCAC TGATAGCACCCACACCTAGAAAGAAAGAAGTGAGTAACTCTTGCTCTGAAAATAATTTCTGCCCTTTTTATTTAAGGGTT TCATTGTGTTTGTTTGAAATCAAGGGCAGCAATAACTTTTCGATGATCAAAACCTTACTGTGTGAAGTTACGTAAATAGA TATACATCTATTGAAAACTTGAGCTTATTTCTTAAAGTCAGCCGTGAATATCCCTGATCAGTATACCACATTGTGCTCTC GTGTTTGTGATTTGCACCTCTTATTTTGCTGTTTTGTGTTATGTTATGGGAGTGTGAATAAAGAAGCTTTATTGCATCAC ACTACCTCAAGATTTTGTAACACATTTTCCAATGTACACCAACTGTAATAGTCAACTCTTGAACTGTCAAATGGAAAAAA ATATATAAAGCCCAGAGGAGTGTTTGCCCCCGGTGATATTGTTTAACATGTGTTGCCCTGCATGATGGATATTTATACTT GGGAATTTCTGGCCAGCAAAGGTCCAGGGTCAAGGACATATCTCCCTTTAAATAACTTATGTTCACAATGGAGAGAGAAT ATCTAGAAACTGTTGGAATGAAACTTAGAGCCAAATACTTGATGAATTAACAAGAATCACTGCATAGAGTAATTAATAGC TTTATGTATTCCAAATTGAACATTTTCTTCCAACCTCCTGAATATATTGATTGCCCTTCTGATTGATATGTATTCTTGAA TATTATCTTTGGGGGGTTCATTGTAGTTAATTGAGTTTTTTTAGTTGTACTAAGAAAAAAGAGCATAATTATATGTGATA GGAATTAAAATCTATGAACTTTGACTTGGTGTTCTGTGCACCTGAATTGCTTAACTTTATTCATCTATACTTAACTGGCA TAGCTTTCCTAACTCAGATACCAATAATTTATAACATCCAGAGTCATGTTAATATGTTGGATTTGCCACGGAGGAACATT AGACAAGTGAAGAATTATAATCATTAATCAGAAAATTAACTTTTGAGATTTTAACAAGTTCATTGTTTATTATATTTGTG GGTGTGTTTTATCACAATTTTAACTATCAAATCAATGGTTATCCCTGCACTTCACTTTCTAATAGTCAGATTCATTTATT TTTTGGAAAATGGATTTAGAAGTGATGTACATATAACTAGTTGCTGTCATGAGTGCCCGGACTAGATGTTGGACATTGGC CAATTTAGGTGTTAAAGTTGTTTGTGACTGTCATTCATCAATGAATCGATCCTAAAAGATTAGGACCTTAATGTTCGACG TGTATTGTTGGTTGAGCTTATTGGACTGCTACTGCTTCTGCAGTTTTTCTTTCTTTCTTCTTTTCTTTTTTTCTTTCTTT TCATTGTGTTTTTGTTTGCAAGAGAATTTTTCATAGTCAAACCCCCATTATACTGTTCATTTTAATATGGAAGCATCGCA ATCTGTTTCAATTCTAATCTTCATCTATCCCTTTACATATGTCATTCTTCGCAAAATAAATTATCCTTGGCAATACTCTT TTTCTATTTGGCAGAGTCCTGATGATCAAATGTATGGATCATCGGAGATCAGATCACCCTGTTCTATTTCCATCCCCATT TTCTGTTTCTATTTCTTGTTTCCAGTTGTAATTAATTAATGTCTCCTTGTTTTCACTTTGTTTTGTTTCCTATACTAAAC TTTGCAAACAGAAAACAAATTGAAAACAAGGTAGAACTTTTGGAGTTAAATCTGAAAATAGAATTGTTTTCTGATACCAA CAAGCCCCAATTGTGCCTCCTACCTGATTTGTTTGCTGGAGACTTAATTTGTGATGGTTTAATTTTTAATATTGGTTCCC CATGGCATATTACTTACTTGGTCAGCTTTTCTATTACAAGATTTACAACCACCCTCTATTATTGTGCATACTGATGCATT TATCCCTGACCATTATATCATTTCATATTATTTTCTTTTGGAAAAGTTTCATCCAAAGAAAGATGCTGATGTGTATACTC GCATACCGCAAAGACGAAATAACAGAAATTTAAGTATGATTAGTTTATGGCTATGCTCATGTTTTTGTTTGGCTACATAT CACTTCCACATTTTCCACAATGGACAAGGTATAAATAAGAGATGTTTCTTAATCTTGGGAAATCTCTTGCAATGTGCTTG AAGTTATGGTGAATCTTGGGAAATCTCTTGCAATTGCATACTAGATCCCTTTACCCACTTCCTATTCTGTCAATATCTTC TTTGTGAGCCATCACCCATGAATGAATACCACTCAATATTGATGCTAACATTCACTTCCCAGATCCCAATCCCCCTCAAT TATCACTCCATTTGCATTCCTGATGGTGACATTTCAATGATTTGCAGGAAGAATCTCCACTTGCTAAGATTACTCGTGAC AGTGCGAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCGCAGGTGACTGCAAACCCCCTTTCCCCTTTAATAGCATA AGAAGTTGGTTATGAGATTTATTATTCTGTTAGAAGTCTGTTACTCTAGTTGTTATTCCCTGGCTCTTTTTGGTATGAAA ATTCATCAATAGACAACTGAAACATTATGGTGAATTTCTTGTTTGTATGTAGGTAATCAAGGATATTCTGTTCAACTCAG TTCACCAAGCAAACAAGTCTCGCACAGAAACAACTTCTGACCCTGAACCAATGATTGAAAGCTGA
CDS sequence (LotjaGi1g1v0393500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTCATCATCGTCATCATCTGCAATCGCACAACAAACATGGGAGCTCGAGAACAACATAATCCCGATGGACAC TCCTTCAGACGATTCCATCTTCTACTACGACGAAGCTGGCCAGAACGAGTTCCAGCGTGAGAAGCCATGGGCAAACGACC CTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTTCTCAAGATGGTTGTTCACGCGCGCTCCGGCGGCACCATC GAAGTCATGGGCCTCATGCAAGGAAAAACCGACGCCGATTCGATCATCGTCATGGATGCTTTCGCTTTGCCCGTTGAAGG CACTGAAACCCGTGTCAATGCCCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGACCAATAAGCAGGCTGGGA GGTTAGAAAACGTTGTGGGGTGGTACCATTCTCATCCGGGTTACGGTTGTTGGCTTTCGGGTATCGATGTTTCTACGCAG ATGCTGAATCAGCAGTTTCAGGAGCCTTTTCTTGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAGGTTGA GATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCAGATGAGCCTATTTCTGAGTATCAGACCATTCCTTTGA ATAAAATTGAAGACTTTGGTGTCCATTGTAAACAGTATTATTCCTTGGATATCACTTACTTCAAGTCCTCCCTTGATTCA CACCTGTTGGATTTGCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTCTGTTGGGTAATGGAGATTACGT TGCTGGACAAATCTCGGATTTAGCTGAAAAGTTAGAGCAAGCAGAGAATCAGTTGGCGCACTCACGCTTTGGGTCACTGA TAGCACCCACACCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCGAAAATAACTGTGGAG CAAGTGCATGGTCTAATGTCGCAGGTAATCAAGGATATTCTGTTCAACTCAGTTCACCAAGCAAACAAGTCTCGCACAGA AACAACTTCTGACCCTGAACCAATGATTGAAAGCTGA
Protein sequence (LotjaGi1g1v0393500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSSSSSSAIAQQTWELENNIIPMDTPSDDSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALALLKMVVHARSGGTI EVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQ MLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDS HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPTPRKKEEESPLAKITRDSAKITVE QVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 4 | 262 | 259 | 9.8E-116 | – | |
PANTHER | 5 | 346 | 342 | 7.1E-179 | – | |
PANTHER | 5 | 346 | 342 | 7.1E-179 | ||
CDD | 49 | 321 | 273 | 7.29777E-157 | – | |
Pfam | 57 | 168 | 112 | 2.0E-34 | ||
SUPERFAMILY | 59 | 196 | 138 | 9.68E-14 | – | |
SMART | 59 | 196 | 138 | 4.6E-47 | ||
ProSiteProfiles | 60 | 197 | 138 | 34.275 | ||
Pfam | 256 | 336 | 81 | 2.9E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | COP9 signalosome | A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. |
Expression pattern of LotjaGi1g1v0393500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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