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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0473300 |
| Transcript ID | LotjaGi1g1v0473300.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A059CIQ4|A0A059CIQ4_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98370544..98375203) extracted from Lotus japonicus Gifu genome v1.2.
AAAACATTTCAACCTTCAACTATATTTTGCTGCAAATTAGAGATCTAGGACGTATACTCAAATTCTACCCCTTGTAAGTT TAGTGGCCTTTAGTTTTCTGACCTTGGTGGTTTGTAATAATTATCCTAAATTAAGTGCTAGATGTCCAAGTGTGAATATA TTTCTGCATGATATTCCCACTATCCATTTAAAGGCCTGATAGTTATCATCTAGGGGGTGTTCATTCAAAAGGCGTTATTA GTTTTTCTATAATATTTATGATGGTCTTGACTTTTGGCCTTTATCTATTTTCTTACTCAGGATGTAACAGCAACTAAAGG AAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATTTATGAGAAGGGTTTTGAAAAGCCATCTCCTA TTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACTGCT GCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATAACAATGTTATTCAAGGTTTGACTTCGTTCACTAACATTTA GCTTTTTGTCCAGAAAGATACTCTAGCTCTGATAGTAATTTGTTCCTGAAAGTTATCCTTCTTTTCCCTATTAAATATTA TTATTTAAAACTTGAAATTCCTTTTAAACAAACTGACTTCTTGTGGGTAAATTGTTACTGTTTTAGCCTGGAATTTCATT GCTGTTAAGAATATAAACATGTGATGGGTGCATAAATCATCATGTGAGGGTACTCTAATTTGTTTTTTTTTTTGGGTATC CTATAATTGGTCTCTGTACATATCATACGTAGATATTGCCTGCCACGATTCTGTCTGACCTACAAAGGCTTCTTCTATTT TTCTTCATAAACAAAAACAAATGTGCATATAGATTTTGTCACCAATTGCCAAAGTTAATTAAAAATAGCAAAAGCTAGTT GTCTGTTGATGCATGATTCTATTTTTCATTATCTATAAATATTTCTTGTCTCGTGTTTTTAAATGAGAATTGGTTTGAGG CTTTACTCATCTTTTGTTCATTGCCTTTGTATTTGTTCTGTCATGCAGTTGTTATACTGGTCCCAACAAGAGAATTGGCT TTGCAAACATCACAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCT GAAAGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTTGCAAAGA AAGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGTAATTGCAATTCACCTAAAGTTTTCAAATTTA TATAGCATCTGCCATCTGGTTGAGAAGCATTAACTGTTTGATAACGTTGTTATTTAAAATAGGATTAAGATGAGGCTTAG AAATTTTGGTATTGCCTGATATCTAGAATTCTAGATTTGTTTCTATGGTTTCTGTCTACTGTCTACTCTACTTGGATAAG GATATTGTATCCTTGTGTTGTCAAGTTTAGTGGAAGACTGGAAGCAACAACTTTGTTTGTTGTATCTCCGATTTTTGTTT TAAATAGTGAGCAGAATATCTTTTTCTTTATGTCTTTTAACATTAGTAGCAACTTCAACAGTGACAGTTATATATCAATC TGAATCTTTGCATAACTTTCTCTCAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCAGCTGATTCAA TTTCTTTCTCCTAACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGGAAAGATATCT TCGTAAGCCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGA GGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGGTATAAATTTTTTATGTTAAGATATTCTGGATTCTTTTTATT TGAGAGTTTTGAATACAATAATAATAATGGCTGCTATTCCAGCTTCAAATAAACCAATCAATCATCTTCTGCAATTCGGT GAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATGTTACAAG ACCACCGTAATAGAGTTTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGGTACGTTGTTGGATCTT TAGCATCTTACTATGAATGAGTATAATGAGTGTTTCTTTGTGTTGATTGTGAGCAATGCCTATCTTCCTATCTGTGGCTT ACTTAAATATATAACTTTCTGATCACGTTGTCCTTTATTTTCTGATATCATCACCTTTTCTTTTAGAAATCAGTCTTAAA AGTGAATATTAGTATATTTGTATTGCTCGAGTGCTCTGGGGAAAAGAACTTAATTAAGCGATAAACACTTATCACATAAG GGCTTACACCTAAGCTTATGTTAGAAACTTTTTGAAATAAGCACAAAATATCTTATAGGCTGGTATAAATATTTATTCTC AAGTTAATCTTAACAGCTTATGGAAATAAGCTTTTGGCTTAAAAGCACATTTGGTCCCCCACAAATGCGAATTGTGCAAA ATGAGTCCCTAAACTATTTATTTAGCATTCTCAGTCCCCCACGTTTTCTCCTGTTACCACAGTTAGTCCTTCTGTTAGAT TTTGGACGGTTTTTTCTTATGTGGATTTTTTTAAATGACTTGGAGGAGAGAGAAGAAGGTTAGTAGGAGAGAGGGCACGC ATGTGCCTTGCACGTGCCCCTTTTCTTCATCTTCTTCATCCCAAACCCAGAATAAACCTAAAACCTTACATTCATCAATG CATCTAAAACTCCTAACATTTAATCTGCAACCAACAACAAAAAATGCCCAGCCCCATCTTTCTTTCTATGAAACCAATAT GAAAATAACCACCAATCCTTGCAGATTCAGATTTCGACCTTTCCCCTTTCTTCCAGATCCAAATTCAACATTTTCCCTTC CTCCCAAATCCGTTTTGAAGATCAATCGGGCTTTTCTTTCTGATATTTTTTTTTCATTTTTGGAGAGGCCCCCATCCACC GCTCCATGTGAACTACTTCACGCATTGTACAACAGAGAGAACCCCACTCCAATTTTTTCTTCTCCTTCTTCCCCAATTTT TTGTGAATCTTTCTCTTCCACTCCTTATTGAATTGGGGTTTGTTTGATGGTGTTTCTAGGTCCAAGGGAGAGGGTTCAAA GGTACCCAAAACTTTGCAATCTGGATTGGTGTTTGTTCAATGGTGTTTCTGGGTCTTAGGAAGAGGGTTCAAAGGTACCC AGAACGAGATCGAAGGAGAAGAGGGGTCGAAGTTACCTAGAACGTCGCGATTTGGATTGGGGTTTGTTAGATGTTGTTTC TGGGTCAAAGGAAGACCAAGAGAGATTGAAGTACCCAGAACGAGATTGAAGGAAGATGGTTCAAGGAACCCATAAATTTG TGTTCAAAAAAAAAAACTATCTTGTTAGAAATTTTCGTTCACGGTAGAATTTCCAGCCTTGGGCTATATATTTTTGTATT TATTGACTTGCTCTTATAGAATATAGATGATGATGTTTTGGAGACAAATATGATGAACGTGATGGTGAATCTTCATTCAT ATGTCTATGAGTTTTTTATTATGAATTTGTGATGGAAATTGGGATGTAGATAATGAACGTGATGATGGAAATTGATATTT GGGTTTTTCTGGGTTTATGATGAAGAAGATGAACATTCATCATGTTTTTGATTTTTTTTCTTTTATTTTTTAATCAATTT TTTAACAGATTCTGTTAGTTTATAGACGGAAAACTAAAATTGCAAACAGAGGGTAATGTCGGGGACTAAGAATGCTATTT TTAAAGTTTAGGGACTTATTTTGCACGATTCACATTCGTGGGGGACCAAATGTGCTTTTAAGCCTAAGCTTTTTTTAGTG TATAGGTAAGTCAAAGCTATTTTCTTAAGCTTACCCAAGTGCCTGCATTAGTGCTAATGCTATAAGATAAGCTCAAATAA GCTCTTCTAAACGTAGTTTAATTCATTGATGCGTTGATGATACTGGGTGATAATGTTTATGAATATTTGTTGCCCATATT TCCTTAATTGAACTTGTTAGATTTTGTTTTCTCTTGATATTTTTTCCTATTAATAATGACTTCTAATTTTTCTCTCTTGT TTTGAAACTCAGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAAC GCAGAAACTTATCTGCACAGGGTACGCTTGATTTCTGCTTTCTTTCTCCTCTACCCTGACAATGATTCTCTGTATGAGTT CTTATCTATGTTCTGTTGTACAGGTTGGTCGTTCAGGGAGATATGGGCACCTTGGTTTAGCAGTGAACTTGATCACCTAT GAGGATCGCTTCAATTTGTAAGTATATCTGGTTGATCTGAATTCCAAAGATATCTTCTGACTTTCTGTAGATCTCTGATG TATTTTCATATATTTGTCCAGATATAGGATTGAACAAGAGCTCGGCACTGAAATAAAACAAATTCCGCCACACATTGACC AGGCAATATATTGTAGATAG
CDS sequence (LotjaGi1g1v0473300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTTATGAGAAGGGTTTTGAAAAGCCATCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGA CATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACTGCTGCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATA ACAATGTTATTCAAGTTGTTATACTGGTCCCAACAAGAGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTTGGA AAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGT TCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTTGCAAAGAAAGGTGTTTGCATTCTGAAAGATTGCTCTATGC TTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTTCTCCT AACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGGAAAGATATCTTCGTAAGCCGTA TGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCC ACTGCCTAAATACTCTCTTCTCTAAGCTTCAAATAAACCAATCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTC CTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATGTTACAAGACCACCGTAATAGAGT TTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAG TCAATGTTGTTATTAATTTTGATTTTCCCAAGAACGCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGATATGGG CACCTTGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTCGGCACTGA AATAAAACAAATTCCGCCACACATTGACCAGGCAATATATTGTAGATAG
Protein sequence (LotjaGi1g1v0473300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDHDNNVIQVVILVPTRELALQTSQVCKELG KHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLSP NRQILMYSATYPVTVKDFKERYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRYG HLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 347 | 347 | 1.1E-228 | – | |
| CDD | 1 | 190 | 190 | 1.05516E-133 | – | |
| PANTHER | 1 | 347 | 347 | 1.1E-228 | – | |
| Gene3D | 1 | 193 | 193 | 7.1E-63 | – | |
| ProSiteProfiles | 1 | 16 | 16 | 7.315 | ||
| SMART | 7 | 203 | 197 | 3.9E-56 | ||
| Pfam | 13 | 177 | 165 | 2.4E-43 | ||
| ProSiteProfiles | 19 | 189 | 171 | 28.661 | ||
| SUPERFAMILY | 58 | 342 | 285 | 9.0E-71 | ||
| ProSitePatterns | 135 | 143 | 9 | - | ||
| Gene3D | 194 | 362 | 169 | 1.3E-54 | – | |
| ProSiteProfiles | 199 | 359 | 161 | 24.013 | ||
| CDD | 200 | 329 | 130 | 3.71593E-57 | – | |
| Pfam | 214 | 320 | 107 | 4.4E-28 | ||
| SMART | 239 | 320 | 82 | 1.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0473300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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