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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000629
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 102 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 8.140s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050249.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr0 17066995 17071627 -
2 domain predictions
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Lj0g3v0060759.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like isoform X2 [Cicer arietinum] gi|502081287|ref|XP_004486821.1| chr0 20260185 20264457 +
2 domain predictions
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Lj0g3v0125239.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis vinifera] gi|225457931|ref|XP_002273443.1| chr0 56205455 56207107 -
2 domain predictions
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Lj0g3v0190499.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr0 93121919 93127115 -
2 domain predictions
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Lj0g3v0241739.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| chr0 125463002 125465782 -
2 domain predictions
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Lj0g3v0245039.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cicer arietinum] gi|502146038|ref|XP_004506292.1| chr0 127049994 127053584 -
2 domain predictions
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Lj0g3v0245039.2
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| chr0 127051758 127054753 -
2 domain predictions
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Lj0g3v0258839.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine max] gi|356504849|ref|XP_003521207.1| chr0 134391357 134397770 -
2 domain predictions
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Lj0g3v0273279.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Glycine max] gi|356520426|ref|XP_003528863.1| chr0 141625346 141640119 +
2 domain predictions
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Lj0g3v0298949.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| chr0 155380623 155387217 +
2 domain predictions
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Lj0g3v0361239.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform X1 [Cicer arietinum] gi|502076924|ref|XP_004485495.1| chr0 190278308 190283531 -
2 domain predictions
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Lj1g3v2628740.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Fragaria vesca subsp]. vesca] gi|470142207|ref|XP_004306806.1| chr1 30744419 30753054 -
2 domain predictions
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Lj1g3v3022240.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like [Cicer arietinum] gi|502086882|ref|XP_004488356.1| chr1 34325854 34332933 -
2 domain predictions
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Lj1g3v4657810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| chr1 55282481 55288872 +
2 domain predictions
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Lj1g3v4848440.1
n.a. DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357511395|ref|XP_003625986.1| chr1 58700838 58704576 -
2 domain predictions
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Lj2g3v1451720.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Glycine max] gi|356511678|ref|XP_003524550.1| chr2 22818599 22823838 -
2 domain predictions
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Lj2g3v1536140.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 5-like [Glycine max] gi|356531475|ref|XP_003534303.1| chr2 24097685 24102789 -
2 domain predictions
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Lj2g3v2827810.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] gi|356540003|ref|XP_003538481.1| chr2 36907270 36912438 -
2 domain predictions
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Lj3g3v0306870.1
n.a. DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357454677|ref|XP_003597619.1| chr3 2250804 2255071 -
2 domain predictions
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Lj3g3v0323530.1
n.a. PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1| chr3 2548778 2551107 -
2 domain predictions
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Lj3g3v0950560.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine max] gi|356555223|ref|XP_003545934.1| chr3 12120450 12124772 +
2 domain predictions
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Lj3g3v2664350.1
n.a. PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1| chr3 32491180 32494308 +
2 domain predictions
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Lj4g3v0096270.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cicer arietinum] gi|502149572|ref|XP_004507582.1| chr4 832309 834955 -
2 domain predictions
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Lj4g3v1440690.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like isoform X1 [Cicer arietinum] gi|502176476|ref|XP_004515873.1| chr4 22309261 22313916 +
2 domain predictions
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Lj4g3v2846270.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr4 38097820 38102452 +
2 domain predictions
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Lj6g3v0352670.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DBP2-like [Cicer arietinum] gi|502129640|ref|XP_004500377.1| chr6 3318692 3325789 +
2 domain predictions
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Lj6g3v0466820.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] gi|356568033|ref|XP_003552218.1| chr6 4526458 4531774 +
2 domain predictions
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Lj6g3v0908780.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr6 8981613 8988577 -
2 domain predictions
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Lj6g3v0908780.2
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr6 8981613 8988577 -
2 domain predictions
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Lj6g3v1164020.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like isoform X1 [Cicer arietinum] gi|502086117|ref|XP_004488114.1| chr6 14246480 14252361 +
2 domain predictions
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Lj6g3v1226300.1
n.a. PREDICTED: eukaryotic initiation factor 4A-15-like isoform 1 [Glycine max] gi|356530401|ref|XP_003533770.1| chr6 15244613 15247733 +
2 domain predictions
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LotjaGi1g1v0031700.1
n.a. RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 LjG1.1_chr1 4061731 4068781 +
2 domain predictions
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LotjaGi1g1v0031700.2
n.a. RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700 LjG1.1_chr1 4061976 4068230 +
2 domain predictions
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LotjaGi1g1v0079500.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11477465 11485347 +
2 domain predictions
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LotjaGi1g1v0079500.2
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11478765 11484907 +
2 domain predictions
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LotjaGi1g1v0079500.3
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11478773 11484004 +
2 domain predictions
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LotjaGi1g1v0079500.4
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11478779 11483835 +
2 domain predictions
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LotjaGi1g1v0079500.5
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11478787 11483999 +
2 domain predictions
 –
LotjaGi1g1v0079500.6
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42; TrEMBL-Plants: tr|V7CJE2|V7CJE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079500 LjG1.1_chr1 11479222 11482626 +
2 domain predictions
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LotjaGi1g1v0206000.1
n.a. RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51; TrEMBL-Plants: tr|A0A0B2P7X3|A0A0B2P7X3_GLYSO RNA helicase; Found in the gene: LotjaGi1g1v0206000 LjG1.1_chr1 44787574 44795634 -
2 domain predictions
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LotjaGi1g1v0206000.2
n.a. RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|I1N1P3|I1N1P3_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0206000 LjG1.1_chr1 44788719 44795490 -
2 domain predictions
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LotjaGi1g1v0473300.1
n.a. ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|V7B5X6|V7B5X6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300 LjG1.1_chr1 98368577 98377576 -
2 domain predictions
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LotjaGi1g1v0473300.2
n.a. ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A059CIQ4|A0A059CIQ4_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300 LjG1.1_chr1 98370544 98375182 -
2 domain predictions
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LotjaGi1g1v0473300.3
n.a. ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A059CIQ4|A0A059CIQ4_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300 LjG1.1_chr1 98370544 98375203 -
2 domain predictions
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LotjaGi1g1v0473300.4
n.a. ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A151TBJ5|A0A151TBJ5_CAJCA DEAD-box ATP-dependent RNA helicase 8; Found in the gene: LotjaGi1g1v0473300 LjG1.1_chr1 98370544 98377130 -
2 domain predictions
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LotjaGi1g1v0473300.5
n.a. ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|V7B5X6|V7B5X6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300 LjG1.1_chr1 98370544 98377133 -
2 domain predictions
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LotjaGi1g1v0758900.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24; TrEMBL-Plants: tr|G7KTM4|G7KTM4_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi1g1v0758900 LjG1.1_chr1 133225458 133230046 -
2 domain predictions
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LotjaGi2g1v0154800.1
n.a. ATP-dependent RNA helicase; TAIR: AT5G62190.1 DEAD box RNA helicase (PRH75); Swiss-Prot: sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7; TrEMBL-Plants: tr|A0A151QN94|A0A151QN94_CAJCA DEAD-box ATP-dependent RNA helicase 7; Found in the gene: LotjaGi2g1v0154800 LjG1.1_chr2 55261458 55266126 -
2 domain predictions
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LotjaGi2g1v0167700.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT5G60990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10; TrEMBL-Plants: tr|K7KC67|K7KC67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167700 LjG1.1_chr2 57879254 57886055 +
2 domain predictions
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LotjaGi2g1v0167700.2
n.a. ATP-dependent RNA helicase DDX47; TAIR: AT5G60990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10; TrEMBL-Plants: tr|A0A1J7G8N7|A0A1J7G8N7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167700 LjG1.1_chr2 57879682 57885032 +
2 domain predictions
 –