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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0498200 |
| Transcript ID | LotjaGi1g1v0498200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101427593..101430979) extracted from Lotus japonicus Gifu genome v1.2.
CAAACCTTGCAACACAGCTAGGCTAGCCACAATGATTTCCTTAGCAGATGCTTATCATGTGGTGATAACCACTGTCCCTT TATACGTGACCATGATACTCGCCTACATCTCAGTGAAATGGTGGAAGATTTTCACACCAGATCAATGTTCAGGCATAAAC AAATTTGTGGCCAAATTCTCAGTCCCACTCTTGTCATTTCAAGTCATTTCCTCCAACAACCTCTACAAAATGAGCATGAA ACTCATGTATGCTGATTTTGTTCAGAAACTGCTTGCTTTTCTGGTGTTAACAGCAATCACTAAGATCAGAGGAAAAGGAG GTTTGAAGTCGATCATAACTGGTTTTTCATTGTCAACACTCCCTAACACTTTGATTCTGGGAATCCCACTCATGAAGGCT ATGTATAAGGATGAAGCTGTTGTTTTCATAGCACAGATTATTTTCTTGCAGAGCATGGTATGGTACAATTTGCTCTTGTT TCTTTATGAGTTTGATGCTGCCAAGAGTACTAGACCTGCTACACCACCTTCACAAGGCACAGGTAAAGAAATAAAGAGTA CTTGACCAAATACAAACTTAGATGATTCCTAATTTTCATTTCATCATTTTTTTCTCCTTATCATTAATTGTCCCATAACA AGTACATTCTAAAGCCAAAATTGATATCTATGCATTTGAGATCAGATACATGGATTGAGATTCAATGTCCTCAAATTTTG TCTCATTTCTTGTTTTTGTCAATGAAATTATCATTACAAAATCGATTGATATGACATTCATAACCTCACATGGATGGTAT TTTATTGACATAACATAGCTCATTAGTGGGATAGGTAGTAAGACACCATTTGGGAATTGACAATTTTGATACCGAATACA ACCCTATATATATTATTAAATCATGGCTTAAATAAGTTTTTCGTCCCTAACCTTTCCATAATACCTGGTTTTCGTCCCTC GCCGGAGCAAAGGTGGGGTTTAGTCCCTAACCTTTGCCAAAACGTTTGGTTTTCGTCCCTCCGGAGCTCTGGGTCAACGC CGGAGCTCCGGTGGCCCATGTGGCAATGCCACATAGGATTAGTGAGGCCACGTGTTATTATTATTATTGCTAAATTTTGG ATCTCATCCTCATGTATAAAATTGAATTTGGTTTTAGTCCCTGGAATAGTAATCATGATTTGGCATGCATCCTTACATAG AATATTGATCTGTGTTTTGGTCCCCTATTGAAAGGCTACTTAGGAAGAAAAAACGTGTTAAAGTATGACAATTGCAAATG CCACAACATAATTTCATGCATAAGTCAATGGTGAAAACTTACTGGAGGGGTTGGAGCTGTTGTTGGTGCCTGGTTTCCAG CTTGCTCCTGTGCTGGTTCTTGAGGATTTGTCACATTCCAGCTTGCTCCTGTGCGTGCTAATGTGGATGGACCACTATTT TTATTGATGTAGCCAAGTTAAGCCACTTGTGCAATTTATGTCTTTGTGGATGGACCACTATCATTTTGTAAGAATATTTT GACTTATGCATGAAATTATGTTGTGGCCTTAGCAATTGTCATACTTTAACACGTTTTTTCTTCCTAAGTAGCCTTTTAAT GTCCAATAAGGGACCAAAACACAGATCAATATTCTATGTAAGGATGCATGCCAAATCATGATTACTATTCCAGGGACTAA AACCAAATTCAATTTTATACATGAGGATGAGATCCAAAATTTAACAATAATAATAATAAAAACACGTGGCCTCACTAATC CTATGTGGCATTGCCACATGGGCCACCGGAGCTCCGGCGTTGACCCAGAGCTCCGGAGGGACGAAAACCAAACGTTTTGG CAAAGGTTAGGGACTAAACCCCACCTTTGCTCCGGCGAGGGACGAAAACCAGGTATTATGGAAAGGTTAGGGACGAAAAA CTTATTTAAGCCTTAAATCATGTAAGCAAAAATAACTTTTGATCAGTTAATCTTGTTCAGCCACGCCACAAAGAGTAATC TAAGACAATCAAAGTGGGATTTTCTTTCTCACTTCATTTATATGCTCTTTTAATTTTAATTTATTCCTCTGGAACACAAT TTTGTTGATAAGATATGTCCTTAATTAGTTCTTTAGCAACTATATAAATTAAACTAACGTAACACGGGTCATATCATTTC TATGTCCCCAAAGAACAGTCCCATAAATGAAAGTGTCATTTGCATTTCCTTACATCCAGTTCTTGATCTCTGTTTGAAGG AGAAACGGAGACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGATGAAGAACCAGGAACAAAAAGGAGAGTGAAGATCT TGCCAATTCTTGTCACAGTGGGGAAGAAACTAATCAGAAATCCTAATACCTTTGCAACTTTAATAGGTTTTATTTGGTCA TGCATACAATTCAGGTAATAAGCACACTACATTAGAGTTACTCTGCATGACACTTTTAAGTCTTAAAATTAGATCAAAAT CTTCTTTCTAGAAATCTTGTCTTAATTTCCTGTCGCACCAAAAATTGGAAGTTACAAACTTACATGGTAGATTTTAATTG AAATGTAAAAAATTTATTGGTCGGACAAGAAATTGAGACACCATTTGGGAACAGAAGATTTCAATCCCTTAAAATGTTCA GCCCATCCTTATCATTCCAAGAGATACTTGTTTTCTAATTAATAGCATGTTGCAGGTGGGGAATACATATGCCTGAAATG GTTAATCAGTCAATAGAATTATTGTCCAATGGAGGTCTTGGTATGGCAATGTTCAGCTTAGGTATGTTAAATTAATTGAT CTATGTATATACATGGTTTCCTATTATGAACTTCATAAAATAACAATATCCAAATTCTAGAATTTCATTTAACAAGTGTT CTGTATTTCCTGGTGTACATTTATGATCAGGTTTGTTCATGGCATCACAGTCAAGCATTATAGCATGTGGGCCATGGTTA GCAATGGTGGCAATAGGACTCAAAATTGTGGTAGGACCTGGCTTAATGGCTGTGGCATCCCTTGTCACTGGACTAAGAAA CACATTGTTTAAAGTGGCAATTGTTCAGGTTCTATATCTTGTTTTTTCTTTCTTTTCATTACCACTTTTCAGATCATTTT AAAGGTCATAAATAGTGTGATTAATTTGCATGTGGCAGGCAGCACTACCACAAGGAATTGTTCCTTTTGTTTTTGCCAAA GAGTATAATGTCCATCCAGTGATTTTAAGCACTGCGTAAGTAAAGCCAGAGCATCTCTTTAGTAACCTTTGCAGACATGT CTTGCTTGAGGTTTGATGCTGTTCTTGTTTTGCATTACAGGATCTTGTTAGGGATGCTCATTGCCTTGCCGGTGGAATTG GCCTTTTACTTCCTCTTAGCACTATAA
CDS sequence (LotjaGi1g1v0498200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCCTTAGCAGATGCTTATCATGTGGTGATAACCACTGTCCCTTTATACGTGACCATGATACTCGCCTACATCTC AGTGAAATGGTGGAAGATTTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAATTCTCAGTCCCACTCT TGTCATTTCAAGTCATTTCCTCCAACAACCTCTACAAAATGAGCATGAAACTCATGTATGCTGATTTTGTTCAGAAACTG CTTGCTTTTCTGGTGTTAACAGCAATCACTAAGATCAGAGGAAAAGGAGGTTTGAAGTCGATCATAACTGGTTTTTCATT GTCAACACTCCCTAACACTTTGATTCTGGGAATCCCACTCATGAAGGCTATGTATAAGGATGAAGCTGTTGTTTTCATAG CACAGATTATTTTCTTGCAGAGCATGGTATGGTACAATTTGCTCTTGTTTCTTTATGAGTTTGATGCTGCCAAGAGTACT AGACCTGCTACACCACCTTCACAAGGAGAAACGGAGACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGATGAAGAACC AGGAACAAAAAGGAGAGTGAAGATCTTGCCAATTCTTGTCACAGTGGGGAAGAAACTAATCAGAAATCCTAATACCTTTG CAACTTTAATAGGTTTTATTTGGTCATGCATACAATTCAGGTGGGGAATACATATGCCTGAAATGGTTAATCAGTCAATA GAATTATTGTCCAATGGAGGTCTTGGTATGGCAATGTTCAGCTTAGGTTTGTTCATGGCATCACAGTCAAGCATTATAGC ATGTGGGCCATGGTTAGCAATGGTGGCAATAGGACTCAAAATTGTGGTAGGACCTGGCTTAATGGCTGTGGCATCCCTTG TCACTGGACTAAGAAACACATTGTTTAAAGTGGCAATTGTTCAGGCAGCACTACCACAAGGAATTGTTCCTTTTGTTTTT GCCAAAGAGTATAATGTCCATCCAGTGATTTTAAGCACTGCGATCTTGTTAGGGATGCTCATTGCCTTGCCGGTGGAATT GGCCTTTTACTTCCTCTTAGCACTATAA
Protein sequence (LotjaGi1g1v0498200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLADAYHVVITTVPLYVTMILAYISVKWWKIFTPDQCSGINKFVAKFSVPLLSFQVISSNNLYKMSMKLMYADFVQKL LAFLVLTAITKIRGKGGLKSIITGFSLSTLPNTLILGIPLMKAMYKDEAVVFIAQIIFLQSMVWYNLLLFLYEFDAAKST RPATPPSQGETETAREVQSKREEDEEPGTKRRVKILPILVTVGKKLIRNPNTFATLIGFIWSCIQFRWGIHMPEMVNQSI ELLSNGGLGMAMFSLGLFMASQSSIIACGPWLAMVAIGLKIVVGPGLMAVASLVTGLRNTLFKVAIVQAALPQGIVPFVF AKEYNVHPVILSTAILLGMLIALPVELAFYFLLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 355 | 355 | 2.6E-96 | ||
| PANTHER | 1 | 355 | 355 | 1.3E-215 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 355 | 355 | 1.3E-215 | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| Pfam | 9 | 181 | 173 | 3.6E-47 | ||
| Phobius | 29 | 70 | 42 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| TMHMM | 71 | 90 | 20 | - | – | |
| Phobius | 90 | 100 | 11 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 212 | 60 | - | – | |
| MobiDBLite | 161 | 188 | 28 | - | – | |
| MobiDBLite | 174 | 188 | 15 | - | – | |
| Pfam | 197 | 349 | 153 | 2.7E-52 | ||
| Phobius | 213 | 230 | 18 | - | – | |
| Phobius | 231 | 241 | 11 | - | – | |
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 242 | 260 | 19 | - | – | |
| Phobius | 261 | 271 | 11 | - | – | |
| Phobius | 272 | 294 | 23 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 295 | 299 | 5 | - | – | |
| Phobius | 300 | 321 | 22 | - | – | |
| TMHMM | 301 | 320 | 20 | - | – | |
| Phobius | 322 | 327 | 6 | - | – | |
| Phobius | 328 | 353 | 26 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| Phobius | 354 | 355 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0498200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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