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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0534100 |
| Transcript ID | LotjaGi1g1v0534100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106245691..106247424) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATT CTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGTGAGCACTTTTTTTGCAAACTTTTCC TTTCATTCAAAAAAATGTGTTTCAAAATCCCATCTCTCTCTAACATTTAGGGCGTGTTTGGATAAACAATGTTTTAAGCG CTTATGTAAATAAGTACTTATCACATATTCACATGAATGCTTATTCATTGAAATTATTTGAAAAACTTATTCAGTAAACT CAAAAGAGCTTATAAGCAGGTATAAGCGGTTTTGCAAAAGTTAATATAAGAAGACTATCAAGATAAACTCATAGCATAAC TGAATCAACTAATTTTTCCTCAGAATTAATTCCGGCATCCCGGAGGCTATCGAAATGACTACTTATTGGTTATTTTGGCA GGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTTTCTCATGCATTTGGGCTTTTTGT GGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGCCATGTGAACCCTGCAGTCACATTTGGGGCTTTCATGGGAGGAAACA TAACCCTGTTGAGAAGTATTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGCATCCTCCTCAAGTCTGCA ACTGGTGGAATGGTAACCATTAAGCTTCAGCTTTAAACACTTCTACTCATAGTTGATCCTATTATAGCATCTTTGCATCA GCTTATATTTTTTAGAATCAATTCCAGCACCCAGATGCTACTCAGTGTCAGCTTAGTTCCACGTTTGGGAGCCTTAGATG CAATTCTCATTGACAATCAACTTAGTGCATGTTTGGATACATAGAGGAAAACTAGAGAGTCAAGATCACGATGGAATAAT GGATAGAAACAACTTCCCTAAGCTTTTGTGATTGTTCACCGTGATTTTGACTTCATAGTAGATTTCCAGCATGCTTCCAA ACATGTACTTAGAGAATTGATTTTATTCTCAAAATCAATGTTGCGAGAACCTAGAGAAATTAGCTTTTGCGGTTCACATC ATCAATTGTGGAATTCCATAATTAGATTTCCCAATAGAAATTAATTTCCCAAAAACATATCCAAAACCACTTCACATTCA ACTCGAACTTACTTTTGCCTTAATCAATTTTACTAAAATCAATTTTATCAAAAATCAATAATAACAATGCTTATCCAAAC ACGCACTCACTAAAGCTTCGCTCCAGATGGATTTTTAAAGATTGACTAAAATTTTGTTTTTCCAATTTGTACATTGCAGG AAACATCAGCTTTTGCTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTG GTATACACAGTTTATGCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCT TGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTG TTAGCTGGACCTGGACTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGAT AATATCTTCATTGGTGATGATGGTCATGAACCCCTCACAAACAGTGATTTCTAG
CDS sequence (LotjaGi1g1v0534100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATT CTTCTCCATGCTTATCTTTGTTTTTGCTGGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCAT CACTTTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGCCATGTGAACCCTGCAGTC ACATTTGGGGCTTTCATGGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGT TGTTGCTTGCATCCTCCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGCTTTTGCTCTATCCTCTGGGGTGTCTGTGT GGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTGGTATACACAGTTTATGCCACAGCAGTGGATCCAAAGAAA GGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCTTGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGG TGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTGTTAGCTGGACCTGGACTCATCACTGGGTCTATTGGGCTG GCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCACA AACAGTGATTTCTAG
Protein sequence (LotjaGi1g1v0534100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGKITNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAV TFGAFMGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKK GNVGIVAPIAIGFLVGANILVGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWAGPFMGAALAAIIYDNIFIGDDGHEPLT NSDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 4.3E-143 | ||
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 244 | 244 | 4.3E-143 | – | |
| Gene3D | 5 | 244 | 240 | 1.0E-79 | ||
| Pfam | 16 | 226 | 211 | 1.3E-65 | ||
| SUPERFAMILY | 17 | 233 | 217 | 1.96E-63 | ||
| Phobius | 19 | 36 | 18 | - | – | |
| TMHMM | 20 | 37 | 18 | - | – | |
| CDD | 21 | 229 | 209 | 1.41309E-62 | ||
| PRINTS | 21 | 40 | 20 | 4.1E-47 | ||
| Phobius | 37 | 47 | 11 | - | – | |
| Phobius | 48 | 71 | 24 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| PRINTS | 57 | 81 | 25 | 4.1E-47 | ||
| Phobius | 72 | 90 | 19 | - | – | |
| ProSitePatterns | 75 | 83 | 9 | - | ||
| Phobius | 91 | 113 | 23 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| PRINTS | 94 | 113 | 20 | 4.1E-47 | ||
| Phobius | 114 | 124 | 11 | - | – | |
| Phobius | 125 | 152 | 28 | - | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| PRINTS | 139 | 157 | 19 | 4.1E-47 | ||
| Phobius | 153 | 163 | 11 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 164 | 185 | 22 | - | – | |
| PRINTS | 172 | 194 | 23 | 4.1E-47 | ||
| Phobius | 186 | 244 | 59 | - | – | |
| PRINTS | 209 | 229 | 21 | 4.1E-47 | ||
| TMHMM | 209 | 231 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0534100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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