Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0534100 |
| Transcript ID | LotjaGi1g1v0534100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106245691..106247497) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATT CTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGTGAGCACTTTTTTTGCAAACTTTTCC TTTCATTCAAAAAAATGTGTTTCAAAATCCCATCTCTCTCTAACATTTAGGGCGTGTTTGGATAAACAATGTTTTAAGCG CTTATGTAAATAAGTACTTATCACATATTCACATGAATGCTTATTCATTGAAATTATTTGAAAAACTTATTCAGTAAACT CAAAAGAGCTTATAAGCAGGTATAAGCGGTTTTGCAAAAGTTAATATAAGAAGACTATCAAGATAAACTCATAGCATAAC TGAATCAACTAATTTTTCCTCAGAATTAATTCCGGCATCCCGGAGGCTATCGAAATGACTACTTATTGGTTATTTTGGCA GGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTTTCTCATGCATTTGGGCTTTTTGT GGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGCCATGTGAACCCTGCAGTCACATTTGGGGCTTTCATGGGAGGAAACA TAACCCTGTTGAGAAGTATTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGCATCCTCCTCAAGTCTGCA ACTGGTGGAATGGTAACCATTAAGCTTCAGCTTTAAACACTTCTACTCATAGTTGATCCTATTATAGCATCTTTGCATCA GCTTATATTTTTTAGAATCAATTCCAGCACCCAGATGCTACTCAGTGTCAGCTTAGTTCCACGTTTGGGAGCCTTAGATG CAATTCTCATTGACAATCAACTTAGTGCATGTTTGGATACATAGAGGAAAACTAGAGAGTCAAGATCACGATGGAATAAT GGATAGAAACAACTTCCCTAAGCTTTTGTGATTGTTCACCGTGATTTTGACTTCATAGTAGATTTCCAGCATGCTTCCAA ACATGTACTTAGAGAATTGATTTTATTCTCAAAATCAATGTTGCGAGAACCTAGAGAAATTAGCTTTTGCGGTTCACATC ATCAATTGTGGAATTCCATAATTAGATTTCCCAATAGAAATTAATTTCCCAAAAACATATCCAAAACCACTTCACATTCA ACTCGAACTTACTTTTGCCTTAATCAATTTTACTAAAATCAATTTTATCAAAAATCAATAATAACAATGCTTATCCAAAC ACGCACTCACTAAAGCTTCGCTCCAGATGGATTTTTAAAGATTGACTAAAATTTTGTTTTTCCAATTTGTACATTGCAGG AAACATCAGCTTTTGCTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTG GTATACACAGTTTATGCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCT TGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTG TTAGCTGGACCTGGACTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGAT AATATCTTCATTGGTGATGATGGTCATGAACCCCTCACAAACAGTGATTTCTAGATTTTATTTTATTTTGTTTTAATTTA TTGTATGGAGGAGTGAATAAATTGTTGAAGATTTCAACTCCTTTTGA
CDS sequence (LotjaGi1g1v0534100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATT CTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGCAAAATTACCAACAATGGACCTGCAA CACCTGCTGGTCTCATAGCTGCATCACTTTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCT GGTGGCCATGTGAACCCTGCAGTCACATTTGGGGCTTTCATGGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTG GATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGCATCCTCCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGCTTTTG CTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTGGTATACACAGTTTAT GCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCTTGTGGGAGCCAATAT CTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTGTTAGCTGGACCTGGA CTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGATAATATCTTCATTGGT GATGATGGTCATGAACCCCTCACAAACAATTTCAACTCCTTTTGA
Protein sequence (LotjaGi1g1v0534100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIAASLSHAFGLFVAVSVGANIS GGHVNPAVTFGAFMGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVY ATAVDPKKGNVGIVAPIAIGFLVGANILVGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWAGPFMGAALAAIIYDNIFIG DDGHEPLTNNFNSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 4.0E-152 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 250 | 250 | 4.0E-152 | – | |
| Gene3D | 5 | 251 | 247 | 2.8E-83 | ||
| Pfam | 16 | 234 | 219 | 1.7E-70 | ||
| SUPERFAMILY | 17 | 243 | 227 | 5.89E-66 | ||
| Phobius | 20 | 44 | 25 | - | – | |
| CDD | 21 | 237 | 217 | 4.06909E-65 | ||
| PRINTS | 21 | 40 | 20 | 1.1E-48 | ||
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 45 | 55 | 11 | - | – | |
| Phobius | 56 | 79 | 24 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| PRINTS | 65 | 89 | 25 | 1.1E-48 | ||
| Phobius | 80 | 98 | 19 | - | – | |
| ProSitePatterns | 83 | 91 | 9 | - | ||
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 99 | 121 | 23 | - | – | |
| PRINTS | 102 | 121 | 20 | 1.1E-48 | ||
| Phobius | 122 | 132 | 11 | - | – | |
| Phobius | 133 | 160 | 28 | - | – | |
| TMHMM | 134 | 156 | 23 | - | – | |
| PRINTS | 147 | 165 | 19 | 1.1E-48 | ||
| Phobius | 161 | 171 | 11 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 172 | 193 | 22 | - | – | |
| PRINTS | 180 | 202 | 23 | 1.1E-48 | ||
| Phobius | 194 | 254 | 61 | - | – | |
| PRINTS | 217 | 237 | 21 | 1.1E-48 | ||
| TMHMM | 217 | 239 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0534100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…