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LotjaGi1g1v0575800.1

Overview

Field Value
Gene ID LotjaGi1g1v0575800
Transcript ID LotjaGi1g1v0575800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A151TMA5|A0A151TMA5_CAJCA Expansin-A4; Found in the gene: LotjaGi1g1v0575800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:111264376..111273185) extracted from Lotus japonicus Gifu genome v1.2.

TATGAATGCAAAGAAAAAATATTCATGTTTACATAAAGGTGGCATTTAATCCTCAACCAAAATCCGACCAAGAAAAATCC TCACCCAAGAAAAAAAGTAGCATTAAAGAAAAAAAAAAAGGAGAGATTTCCAAATGTTGCCCCTGCATTGCAGACTATAA CTACTCCTCCATCCCCCACTCACTGCCCACTCACCCTCATTATCAAATCTCTCTCTCATTTCCACATTTGTCCTAGTTTT TCTAATTTTCTTCTTTAATTTGGTACCAAAAAGAGAGAGCAAAAAACTAAGAAAACAAGAAATGGCAGTGTTCCTGGCCA GAGTGCTCTGCCTCTACATGGCTTCACTCATATCCTTAATGTGGATGGTTCAGGCTAGAATTCCAGGGGTTTACACTGGT GGTGCTTGGCAAGGTGCTCATGCTACCTTCTATGGAGGTTCTGATGCTTCAGGCACCATGGGTATGTAATGTTGTAACAT GTTGCTAAATTTTCAATTTATGTCTATGCATAACTACACATAAATTGATTTTGGCATTGTTGATTTCAGGTGGAGCATGT GGGTATGGAAACTTGTATAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTTTTCAACAGTGGCCTGAG CTGCGGTGCTTGCTTTGAGATCAAGTGCGCCAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCG CCACTAACTTCTGCCCTCCGAACTACGCTCTCCCCAACGACAATGGTGGCTGGTGCAATCCTCCTCGCCCACATTTTGAC CTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACCGCGCCGGCATCGTCCCCGTCGCCTATCGCCGGTACCAAACTCA TTTCACTCTTTTCCTGATTCTAAAATTTAGTTAATGTTGGTTTCATTTAGTTTTCAATTCCTAAAAATATAATATTAATA TTTATTTTAGTCCTAACCATTAAGTTTTGCTTAAGAAAACGATACTCACATATGAGAGATTTGTCACTGAATCACTCGCC AATGAAGAACTTTTCACCAATAGAATAGCTTTATTGGTCAGTAAATTAATTCTAACATATGAGAGATTTTTCTTAAGAGG AGAAATATATACATAAGAATAATTCGTGACCGTTAGATTTAATCATGAATGATTAAGATTAAAACAACTTAGTGATCATT TGATCACTTAAAAATGTTATGTGACTTTCTGGACAGTTTATGATTAAATCTAACGGTTGTGATTTATTCTCATTTTTTCA CATAACATCACCTTTATCATAAGATACATCATCTATATATTAAATGAGAAATGTTGAGAAACAATCTCTTTCAATAACAT AGATATAGTAGCCTAGTCAACCAAAAGGTTTTTTTGTTTGATAAAAATATGTTTAGAGCAGTGAACAAGATATTTAAATT ATATTTGTGAGTTGTGAGCAAGGTGTGTGAAATGTGAATGTAGTTAGTTATGCTTGAAGTGGTGGTTGTTTTGCTTTATG GGTCCATACCCTATTGATGATAAATGACTAATGAGTGTTTTGGTTTGGTTGATATTTACGCAGGGTGCCATGCAGGAAGC CTGGTGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACCTAGTTCTGATCAGCAACGTCGCGGGTGCAGGGGAT GTTGTGCGCACCTACGTGAAGGGCACCCGAACCGGTTGGATGCCGATGAGTAGGAACTGGGGTCAAAATTGGCAGTCAAA CGCCGTTTTGGTGGGCCAGGCCCTGTCATTCCGTGTCACCGCCAGCGACCGTCGCACGTCCACCTCCTGGAACATTGCTC CGGCACATTGGCAATTCGGTCAAACTTTCACCGGGAAGAATTTCCGGGTCTAATAACTCACTATACCGGTCACCAGTCAA CTTCACTTTTTTTATTTTAAAATATTAATATGTGAAAAGCACAACACTCCATTTTGTCATGGTTTCCCACCAATTATCTA TTTACGGTTTTATTTTACCCCCTTCTGGCGCCCATTTTCGTAGCAGATGCTGCTGCTTTTTTGACTGGATGTTTCGGAGA CTGTGAATGTGTTCAGAGAGAAAGGTTAAAAATATAGATGGATTGGGTGAACTAGAACCAGTGAGTGAATGACAGCTTTC TTGTGACAATTTGTTGACTTTTGGGGTTCGTGCCTTTGAGGTTGTGCATTTCAATTTGTATTGTTTTGTAGACTTGGAAA GAAGAAGAGCATAGGAAATGCTGAAGCGGCTAACAAAAGTGTTAGCCCGCGGCTAATTAGTGTTGTGTTATTAAACTGAT GTTATACTCAATGTATCTGAGAAAGGTGTGTTATGGTTAATACATTTATGCTCTTCAAGTTCAACCTTTTTATAATGTTT GTTGAAACTTGAAAGAAGGAGATGTGCAGATGGTGCATGATTGTCTAGAACTAAATGGCAATCACCAAAATTAAAAACCC CAACTACTATACTCTACAATTAATAATTTGAAATCAAATCTTACTTCATTTATTTGTTTCACTCTAGCAGAACGCTATTT CTCTCCGGCATTGCCGCCCTGCAACAGAAGCAGTGCACAGTTTACATTTCAGCATCCCTCACCATAAGGGGCTTCCCTCC TCATAGTTGGTTTTGTATCCAGTGTAGTAGATTTTTTTTTATTCTCTTTAGTAAGGGTTTTCCTATCCTGTAAATAGGAT TTTCTTTTATGTTTTACCTCCTATGTCCTTCTATCATAAGATTAGGAATTCTAGAGACAATGGGACTCTATTTAACAATA ACTTAGGTAGCGGCCAACCTAAAGTTACCTTTAGAGCAATCTCTTGAATAGAATAGAAGAGGTTGTTAGTTGTTGGCACA AACAATTTGAACACATTTTATGCAGGGACAGGATCACTTCCTATTCCAATACTGGGGGCATTTCAAGTTGCCTTGTAGAG TCGGCGCTATAATAACAGTCAAGGTCAGCGAACCCTCTTGGAGAGTCCAAAATCAACCATGCCAACAATGGGAATGTAAT CTCATCATTTGGAATTGTTGACAAACAAAAATGCCCCTATTTGAGAAGAAGCTGCAAAGCAAAAGGCCACACTCCAATAA AATTCCCAATATCAAAAGACAATTTCATCACAAGGAAAATTTGACTGGGAAGGACCATACTGGGTCATTAATGCAACCAA AAATTGGGCATATGACTAAAGTCACTTCTCGAATACATATTAAAACCCTGCTCCATAACTGGTTTGACCGTTGGAATTCT TTGCAGATGCTGTCACTCTCTGCATGCACACAACCCAAATCTTTGCACAAGGCAATTCCACCTCAAGTCCCAACTCAAAT AAAGTTTTACAATATTCCCATCTCAATTACCCAACAAAAAATGGGAGACAGTTGACATCACTGACTCGGCAGTGTAGTCC TGATATATGAAGCCATATTGAAGTTTCATTCATTGCAAGTATCAACACAAAAAACCATAAACATAATCTGCTAAAAAAAT GCATATTCTGATAATCAGTATTATACGCAACAGTCATCCTATAACTGAGTATTCGTATCTCAGTTTTGAACCAAATCCAA TTATGTTAGAGCAAGAGCTTAAAAGTCGGTCCCAATTCAAAACACCCAAACTCAGCCTCGTGTTTTCCTTGGTTTTGATT TCCATTGCTTGAGTATATGTTCAATACCCTCCTTCAACAAAGCCTTCCTTCCTTCTTCAAAATTCCAGAGTTCTGGAATA GGATATCTACCACTAGGGTTGTATTCATTTAGTTCCTTCAGAGCAGTAGTCACTGCTTCATATACCTCATCACCGAATTC ATCCTTCAAAATCCGGATTTTCTCGTCATCTTCATCCAAGATTTCCTGAATAATATAACCAACATACATCAGATCATGCT CGGTGCCTGGGAACATGAGGGAAAGAAACATGCCAGCTAAGAGCTAAGACACGACTAACACCTTTTTCAGCCAATTTAAT TCTAATCAACACCCTAAAACCTACCATGCTTATTAACTATTTCCAAATGACGCATTATATTTTTAAAGTATTACTTAACA TGGATAATGAGGCAGGCGTTCAGGTAATTTCTGCAATAAAAATGACAACACAAAAAGTTCCTATTAATAAAAACATAACT TCCCTTTCAACACTTGTTATTCTGGAAGTCATTTTACCTTGGATTTTCCTTCTTTATCTGTTAAAATTTTAAATGGATGC CAGCTTGGATCTCTAAGATAATCCTCCCACTCTGAGCAAAACTCCACTGCTTTGATATTCACGTCATCGCCAGAAAATTT TCTCTTAGCAGCTTTTATAAATGGCTTACCATCAAGGTCCCCCATTCTTTTCACAAAAATTTTAGCCCGAGCTGTTGTTG TCTTCCTTATACTCTGTGAACAAGGAAATCAGATTACTTGAATAAAATAGAAAGAACAAAATTAGGGCAGCAACAGTAAC ACCAACAAACTAACTGAATTTTTAGAGCTTACTTTGCTAGAAAGTGTAAGCCACAGATCCATTATGTGGAACAAGCATTG CATAATATTGCAAATTAACTAAAAAGGTAATAACAAAAATCTGGTCTTTAATAGACCTGACCGAATTGTACCAAATTTTA TAGAAAAAAGAGGAGAACCAAGCAAACACAAGATTTAGAGAACAGGATAATACCAATAAAAAACTGCAATTCCTCGTTTT TAGAAAGTAGAGTTAAAACAAATAATGTATTGTTTGTGCACTAAAATACATATAAGCAGATCAATGTAAATTATTGAATC AAATCACCTATGTCAGTACCCCAAATATAATTCCAACTTCATGATTTGAAACTTGGCACTCTGCTAAAAGTAAAATATGA ATTTGCATTTCAATTAAATTTATGCTTAAAATTATAACGTATTTTGCACAAATAAAGCACTCAATCACGGTTTAGAAAAA GATTAGTTAGAGAAGACCTTCACCACCCAGAGTTGATTTTCAGACCATTAGATGAGTTGAAAACCTAAAGGCACAATAAA AGCATAGAGGTTCAAATTTATATGCGGATAAAACATGCATACACTTATTAATTCCTTCCTAGCATCTTGCAACTCATCAT TGGTTTTGCGCTCCTTGATAACAAGTGTTTGATGCATTTGTTCAATTCCTTCCCATTCCTCCTCCTTATCCTGCAGTTCC ATTTTAATTGCATCCAATTTTTTCTTCTCGTCCACATCATCCTCTCCCATGTGTTTCATTACCAGAACAGCTCCTCTCAA TCGTTCAATCTCCAATTCCAATGTTTGTTTGGCATCGAGTTCTCTTTGTAGTTCATGAATCTTTCTATGCAGTTTCTCCT TTTGTTTCTGCAATGTCAAACCACAATTAGTCAAAACCATAATGGTTAACTGATTAACTACTTTACACAGAATAAAATAG ACTCCATGCCTTCTGCTCTTCAGCCAAATGCATCATCTTCTCATCAGCCTTATTTTGCTCCATTATTGCCTTTTCATTCT GCACATAAAATACAAAGAACAAAGTTCATCAGTATGAAGCTATTAAAATAAGAGGGGATTGTACTGGGAATTCAACACAA AATACAGCCTTATCCATAAATTTAAACAGTCAAGATAGAGTACATTTTTCTTCTCAAGATCTAGTTTCTTTCTCTCATTT ATATTTTGTGCTTGACGCTTTTGCAGACCCTTCTCACGGTCATCAAGTTTTTTCCTCTGAGCTTCGAGCTCCAACCTGGC CTTTTCATGATCCTTCAGAATATTTTCCAAACGATCACGTTCACTCATCTGCATCTTTTTTGTTTCTAATGGAACAAAAG ACGAAACACTGTGAAAGCTACCATGAAAGATTAAAACATCAAAGCAACAACACCAATTCACACAAAGTAAAACAGATCTC CGACAATAGTCATAACAACCAGAGCGTTTCACTTTCAATTCAGTGAGACACATGGTGAGGTAGTTGATATTAAAAACAAA TGAATGAAAAGAAAACTAAGATGAACTAGAACAGTTCAGTTTAAGTTTTAACATACCATTATTATAAAATTCAGTCATCT CCTTATTCTGATCCATCACTTTGTTCAGGGACACATTGATCTCATCACATTTGCTCCTTACGTTTTCCAATTCCTTAGTC TTCGTTTTCAAGGTATCAACCAAACCGGAGACAAGCTTCGATGTTTTCCTCTTGTCTTCTGCTTCTTTTCCAGAAACAGT TTTCAAATCCCCGTTTTTCCGAAGGTGATCACCAATTATACTCTTCTGATGGTAGTCGTCATCGCGAGCCACCCAACCAT ATAGTTTATCCCCTCGCTGTCTAGTAATGTAGTAATCTCTCTTACCACAATGCTCTGCTTCAAAACTCCTTTCAAAGTTC ATGGCATTGAAAAAGCCATCCATCTCTCTATTAAAATCAACAATGGCAAACCCTGTATGACCGTTGCGGTTCCATAGTGG ATGTACTTTCAAAGGATTAAATCCTTTCAGTGTAAACTCGTCCCTTAGCTTGCTTCCACTTTCTCCTACATACCTTCCAT TTTTAAATTCAGTAGGAACGTTAGCAACAATGCCCATCCAAGGCCAAACAAATAATTGGCCTTTATTATCAGCTTCTGGG GTAGGCTTCACAGCTTCTGGGGTAGGCTTCGCAGCTTCTGTTGTAGGCTTTACAACTTCTGCTCTAGGCTTCACATCAAG ATACTTTTCAATGTACAACTCAAGAGCAGAGTGTTTTGCCATATCTTTCACGCCCCGTGATCCTCTGGAAAATCGTGAGG CATGTTTCAAGATCTCACGCAAAGTGTAATCCTGCTTGTCTGCGCAGAACGGACACCTATACGTTGAATCAGATATCTTC AATTGATAGTAATCATCCTTCAAATCCTTATAATATCTGCCCTCGTAGTAATCGAAGTCAGACTCGCGCTTACGTTTTGA TTTATGAGACATCTGCAAATGAAATTGTAAGAGAAGGTTGATCATCAAACACCAACGACAACAAGAGCAAGATACTAAGA CTAGGCCAAGTAACTTCAAAGCCATGGAAAAACAAATATTGAATCTAATGCAGAATAAACTTAGCAACTGAATGAATACA ACTAATTTTAATTAAAGAAAGTAATAAAAATAAAAAGAAGATGCCTATCATGCTGAAAGATATTCCAAGTTAGTTTATCA TCAATGATTTTCCCTTTTATGCACATTTAGCCCACACACAATATGCTTAAGAAAAACAATTTATAGTGTACTTCACAATA AACTAGAAGTCATTGTAAGAACAGGTCAATCATCAAAAGCAAAATAAACAAGAGGTAGATACTGAATCAAAGGAAAAAAA AACTTGAATTTGATACAGAACAAACTTTTATCTACTATAGCAGAAACTGAATAGAGTGAATGAAGTGAAATGCTTATCCC TAACTAGCAACAGAGCATAACTTGAAGAAAAAAAACAACAGCTGAGTAGAACTAATTTTGATTAAAGCAAGTAATTAAAG GAACAACCAGACTAAGATCAAGCTGAATAATATTCCTATTTTGTTCATCATCACTGATTTTTGTTCCTTTTATGTCCATG AAGGCGATTCACACAACGAAATAGTAAAGTAGAAATGTTACCTTGTGGTGGAAGATTGGTGTTTGACGATACGTTGAGGA AAATGAGGGATTCGGAGAGAAAAGTGGTTGAAAACGGTCAAGAAATAGAGAGAATCAGAGAAGACGAAGAAGCGACTTCG CCGCCGTTGGTTGAGGCTCAACCACTACCACCAGCATTGGAGGATTAGGGTTTTGAAACGAGAGAGAGAGAAAGAGAGAG AGAGGATTTTGGTTCAGTGTTTGTTACGCAGTGCAGAGAAGAAATGAAATGGTGGCAGTGTGCGTAATGCACTCTTGACT CTTGGTCTCTCTGGGTTGTGGTTGTTTTCAACATTCCATATTGGTGTAAGACTGTAAGAGCATCTCCAACGCTGGTGTAA GGAACCGTTTCTTATTTTTTTTGGCAGCGTTGGAGTTGATCTAGGTGGCAGTTTGGTTCCTTACAAACAGTGCAAAGTTC CTTCCACAAGGAACTTTGCTTTTTAGTTTCTTAGCACTAAAAAATAATTTTTTCTCTCACCAAAACCCAACTGATTTTCG TGGGAATACAACAGAATGAAGATGAAGGCTAGAAGAAGATGAAATTGAACCCAACACAGATATGCAGAACATAATAGGAA GACATGAAATTGAAAAAAAACAATATCATTAATTTTTTGAAAATTACAGAGAACAGAAAAGTAAATTTTTACAGAGAAAA TAAAAATTCATGGAAGCTCGAATCTTGTAGTGCATGTGTGAAAAGTGACCTCCTTTCCTCCGATCACGTGGAAAAGGAAC CACATTAGCTCCGATCTGGTGGAAAAGGAACCACCTCCGATTTGCTCCGATCTGGTGAAGTTGATGACGGGTAGTGATGG GGATGTCGGATTTGATGGAAAAGGAAGCTCCTTTGCGAGCTCAAAGCCTTTGAGCGTATGAAACAAGGGCTATGGGGGCG GAAGGTGGCTGTTTGGTGGCGGTGGTGGCCGGTTGGGGGCGGATTTGTGGCCGGTTGAGGGCTTAGGCCAGAGAGACAGA AGAAGTGAGGGAGAGAGGATTTGAACCCATAAGTCAGAGGAGGAAGAAGAAGTGACAGAGCGAGGAAGAGAAGAAGAAGA AGAAGTTCAGAAGAAAAGAGGAAGAAGACATGAACGGAAGAAAAAGCAGATTGAGAGCGTGAGAGGAAGGGGGTGAATGG AGGCTAGGGT 

CDS sequence (LotjaGi1g1v0575800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGTGTTCCTGGCCAGAGTGCTCTGCCTCTACATGGCTTCACTCATATCCTTAATGTGGATGGTTCAGGCTAGAAT TCCAGGGGTTTACACTGGTGGTGCTTGGCAAGGTGCTCATGCTACCTTCTATGGAGGTTCTGATGCTTCAGGCACCATGG GTGGAGCATGTGGGTATGGAAACTTGTATAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTTTTCAAC AGTGGCCTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGCGCCAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCAT CTTCATCACCGCCACTAACTTCTGCCCTCCGAACTACGCTCTCCCCAACGACAATGGTGGCTGGTGCAATCCTCCTCGCC CACATTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACCGCGCCGGCATCGTCCCCGTCGCCTATCGCCGG GTGCCATGCAGGAAGCCTGGTGGGATCAGGTTCACAATCAACGGCTTCCGTTACTTCAACCTAGTTCTGATCAGCAACGT CGCGGGTGCAGGGGATGTTGTGCGCACCTACGTGAAGGGCACCCGAACCGGTTGGATGCCGATGAGTAGGAACTGGGGTC AAAATTGGCAGTCAAACGCCGTTTTGGTGGGCCAGGCCCTGTCATTCCGTGTCACCGCCAGCGACCGTCGCACGTCCACC TCCTGGAACATTGCTCCGGCACATTGGCAATTCGGTCAAACTTTCACCGGGAAGAATTTCCGGGTCTAA 

Protein sequence (LotjaGi1g1v0575800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVFLARVLCLYMASLISLMWMVQARIPGVYTGGAWQGAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFN SGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR VPCRKPGGIRFTINGFRYFNLVLISNVAGAGDVVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRTST SWNIAPAHWQFGQTFTGKNFRV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK 1 25 25 -
SignalP_GRAM_POSITIVE 1 25 25 -
Phobius 1 7 7 -
Phobius 1 25 25 -
TMHMM 3 25 23 -
Phobius 8 19 12 -
PANTHER 9 262 254 2.1E-170
PANTHER 9 262 254 2.1E-170
Phobius 20 25 6 -
Gene3D 25 164 140 9.3E-45
Phobius 26 262 237 -
PRINTS 35 50 16 3.0E-52
SUPERFAMILY 35 186 152 5.93E-56
PRINTS 53 71 19 3.0E-52
ProSiteProfiles 54 168 115 30.496
PRINTS 66 80 15 3.7E-80
Pfam 71 158 88 6.5E-21
SMART 71 158 88 9.0E-58
PRINTS 75 93 19 3.0E-52
PRINTS 93 104 12 3.7E-80
PRINTS 107 117 11 3.7E-80
PRINTS 126 143 18 3.7E-80
PRINTS 143 156 14 3.7E-80
PRINTS 151 167 17 3.0E-52
SUPERFAMILY 165 257 93 2.88E-33
PRINTS 167 179 13 3.7E-80
Gene3D 168 260 93 3.7E-21
Pfam 169 246 78 1.9E-24
ProSiteProfiles 178 257 80 21.042
PRINTS 179 200 22 3.7E-80
PRINTS 205 219 15 3.0E-52
PRINTS 214 235 22 3.7E-80
PRINTS 243 257 15 3.0E-52
PRINTS 243 259 17 3.7E-80

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
Biological process Plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0575800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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