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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0608400 |
Transcript ID | LotjaGi1g1v0608400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT5G40350.1 myb domain protein 24; Swiss-Prot: sp|P81391|MYB05_ANTMA Myb-related protein 305; TrEMBL-Plants: tr|A0A072U635|A0A072U635_MEDTR Myb transcription factor; Found in the gene: LotjaGi1g1v0608400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115284811..115285264) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACAAGAAACTGTGCAACTCTTCTCAAGATCCGGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCCT CATCAACTATATAGCAAACCATGGTGAAGGTGTCTGGAACTCCTTGGCTAAAGCTGCTGGTAAAAACAAATAAAAAAAAA CAAAAAGTTTATTTCTTATTAAGAATTATTACATGTTACATCATTGAGTGCTCTCTTGTTTTTTTAATTCTTGAAGATCT TCTTCTTTCTTTTCTTTTCTTCATCCTCCTAAAACCCTAGGGGTGTGAGAGAATGATTCATCATCATGATGGTTTCTCAG GTCTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTATCTCCGTCCGGATGTTAGAAGAGGGAATATTACA CCGGAGGAACAGCTTCTCATCATGGAACTTCATGCAAAGTGGGGAAACAGGTAA
CDS sequence (LotjaGi1g1v0608400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGAAACTGTGCAACTCTTCTCAAGATCCGGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCCT CATCAACTATATAGCAAACCATGGTGAAGGTGTCTGGAACTCCTTGGCTAAAGCTGCTGGTCTTAAACGTACCGGAAAGA GTTGCCGGCTCCGGTGGCTAAACTATCTCCGTCCGGATGTTAGAAGAGGGAATATTACACCGGAGGAACAGCTTCTCATC ATGGAACTTCATGCAAAGTGGGGAAACAGGTAA
Protein sequence (LotjaGi1g1v0608400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKKLCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLI MELHAKWGNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 8 | 90 | 83 | 1.0E-52 | – | |
PANTHER | 8 | 90 | 83 | 1.0E-52 | – | |
ProSiteProfiles | 11 | 67 | 57 | 23.426 | ||
Gene3D | 13 | 69 | 57 | 2.8E-19 | – | |
SMART | 15 | 65 | 51 | 7.2E-13 | ||
Pfam | 16 | 63 | 48 | 8.2E-16 | ||
SUPERFAMILY | 17 | 90 | 74 | 2.82E-22 | ||
CDD | 18 | 63 | 46 | 1.48785E-10 | ||
ProSiteProfiles | 68 | 90 | 23 | 8.088 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0608400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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