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LotjaGi1g1v0608400.2

Overview

Field Value
Gene ID LotjaGi1g1v0608400
Transcript ID LotjaGi1g1v0608400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT5G40350.1 myb domain protein 24; Swiss-Prot: sp|P81391|MYB05_ANTMA Myb-related protein 305; TrEMBL-Plants: tr|A0A072U635|A0A072U635_MEDTR Myb transcription factor; Found in the gene: LotjaGi1g1v0608400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:115284811..115285264) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACAAGAAACTGTGCAACTCTTCTCAAGATCCGGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCCT CATCAACTATATAGCAAACCATGGTGAAGGTGTCTGGAACTCCTTGGCTAAAGCTGCTGGTAAAAACAAATAAAAAAAAA CAAAAAGTTTATTTCTTATTAAGAATTATTACATGTTACATCATTGAGTGCTCTCTTGTTTTTTTAATTCTTGAAGATCT TCTTCTTTCTTTTCTTTTCTTCATCCTCCTAAAACCCTAGGGGTGTGAGAGAATGATTCATCATCATGATGGTTTCTCAG GTCTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTATCTCCGTCCGGATGTTAGAAGAGGGAATATTACA CCGGAGGAACAGCTTCTCATCATGGAACTTCATGCAAAGTGGGGAAACAGGTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0608400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAAGAAACTGTGCAACTCTTCTCAAGATCCGGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTGATCCT CATCAACTATATAGCAAACCATGGTGAAGGTGTCTGGAACTCCTTGGCTAAAGCTGCTGGTCTTAAACGTACCGGAAAGA GTTGCCGGCTCCGGTGGCTAAACTATCTCCGTCCGGATGTTAGAAGAGGGAATATTACACCGGAGGAACAGCTTCTCATC ATGGAACTTCATGCAAAGTGGGGAAACAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0608400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDKKLCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLI MELHAKWGNR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45675:SF30
8 90 83 1.0E-52 –
PANTHER
PTHR45675
8 90 83 1.0E-52 –
ProSiteProfiles
PS51294
11 67 57 23.426
IPR017930
Gene3D
G3DSA:1.10.10.60
13 69 57 2.8E-19 –
SMART
SM00717
15 65 51 7.2E-13
IPR001005
Pfam
PF00249
16 63 48 8.2E-16
IPR001005
SUPERFAMILY
SSF46689
17 90 74 2.82E-22
IPR009057
CDD
cd00167
18 63 46 1.48785E-10
IPR001005
ProSiteProfiles
PS51294
68 90 23 8.088
IPR017930

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0608400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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