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LotjaGi1g1v0665500.2

Overview

Field Value
Gene ID LotjaGi1g1v0665500
Transcript ID LotjaGi1g1v0665500.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Lycopene beta-cyclase; TAIR: AT3G10230.1 lycopene cyclase; Swiss-Prot: sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic; TrEMBL-Plants: tr|A0A151RUY9|A0A151RUY9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122741388..122749633) extracted from Lotus japonicus Gifu genome v1.2.

TTGCAATTGAGTAATTATGATATAGATAGGTGAACCAGTTGGAGTTTGGCATCTGTTATGATAGGATGTTATCCAATACC AAACAATTTCCCAATTTTCCATTCTATTTTCCTAGAAAAAAATATGACCCACTTGGGATTTGTCGTAGACAACATAGTGT CTGGTCACAAGAGCTTTACCATCTCCACTTTCCATAGCCCATGTCTTATGTCTTCGGCTTCTGCATGTGAGTTTTGCAAT GCTTCGTTTTCTCTCTTTCCTCTGCTTCACGGTAAGCCATCAATTCTACCTGAAAATTTGCTGCTTGCTGTGATTATTGC AATTCCATTTTGTTGCTGCCATAGCTGATTCTATAATTGGAGTAACTGTGCAAAGTAGATTCTTTAAAGGGAGATTATTG TTGTTGATTATTTTTTAGTGTGACCCAGATGGTGTTTTGAGAATTTTTGAAGATTCATTAAGGATTTTGACTTTTTGAGA GATTTGTAGGATACCCATTAATCCATTATGGATACTTTGCTCAAAACACCTAACAAGCTTGGATTTTTGCATCCACTTCA TGGTTATTCAGAGAAATTGAACAATTCAGGGTCCTCTAGGTTGGAGTTTAGGTTTGGTTCCAAGAAACCAGTGGTGAAGT GGGGTGGATGTGGTGGTGGTTTGAGGGCTAGTAGCAGTGCCCTTCTAGAGCTTGTTCCAGAGGTCAAGAAGGAGAATCTG GATTTTGAACTTCCTTTGTATGATTCGATGAAGGGAGCTGTTGTCGATCTCGCGGTTGTGGGAGGAGGCCCTGCAGGGCT TGCAGTTGCTCAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCAATTGACCCAAACCCTAGGTTGATTTGGCCCAATA ATTATGGTGTTTGGGTGGATGAATTTGAAGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTC TACATTGATGACAAAACAAAGAAGTATCTAGATAGACCTTATGGTAGGGTTAATAGGAAGCTGTTGAAGTCAAAGATGCT GCAAAAATGCATTTCAAATGGTGTCAAGTTTCACCAGGCTAAAGTCATCAAGGTTATTCATGAGGAATCGAAGTCCATGT TGATTTGCAATGACGGCGTCACTATTCAGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATCTCTTGTTCAGTAT GATAAGCCTTATAATCCAGGTTACCAAGTTGCCTATGGGATTTTAGCTGAGGTTGAGGAGCACCCGTTTGACGTGGATAA AATGCTTTTTATGGACTGGAGAGACTCACATCTGGACAATAATATGGAGCTGAAGGAGAAGAATAGCAGAATACCCACTT TTTTATATGCAATGCCCTTTTCATCCACCAAGATATTTCTTGAAGAAACCTCTCTTGTTGCACGCCCTGGATTGCGTATG GATGATATACAGGACAGAATGGTTGCTAGGCTAAAACACTTGGGCATTAAAGTGAAGAGCATTGAAGAGGATGAGCACTG TGTCATTCCGATGGGTGGCCCCTTACCGGTTCTCCCGCAAAGAGTTATTGGAATCGGTGGTACTGCCGGGATGGTGCATC CTTCAACTGGGTATATGGTAGCAAGGACCCTAGCTGCTGCTCCTATTGTTGCTAATGCTATTGTTCAGTACCTTGGTTCT GATAGAGGCATCTCAGGAGATGGATTATCTTCACTAGTGTGGAAAGATTTATGGCCCATCGAAAGGAGGCGGCAGAGGGA GTTCTTCTGTTTCGGTATGGACATCTTACTCAAGCTTGATTTACCCGGCACGAGGAGATTTTTTGATGCATTTTTTGATC TCGAACCTCATTACTGGCATGGATTCCTATCATCAAGACTGTTTCTTCCAGAGCTGCTAGTTTTTGGTCTCTCTCTATTT TCTTATGCTTCTAATACTTCTAGGATAGAGATTATGGCGAAGGGAACTGTTCCTTTGGTAAATATGATCAACAACTTGAT ACAAGATAAAGAATAAGTTTTTTTTTCCTTCTAATCTGCTCTGTATGTTACTTGTGTTGTGAGCTTCCAGCTGTAGTGTT TTTTTTTTCCCCTACTGATATTATAGATTTTCATTCAGTATATATATATTGGTTTGATTCCTATTATTCTTTGCTTACTT TTGGGATTATTTTCCATATACTTGGATTGTATATTGCTTTATGAGGAAAAATATCCGTTCGTCTTTGCTGGTTAATTATT ATCTTTTTAAAGAATCTCACACTTCTGCTGCTGCATTAGAGAATGCTTGGTCTAATTCTATCAAGGGCTTGTCTCAGAAT TCATGTTAGGCCTAACTCTACCCCAAAAGTTAGGTTATCAAAGCTTATCTAAGATTTGTTTATTGGGCCATCCATAATTG AGCAATCAGCAGATGTCCACTCATGCAAACTTAAAGTTTCAGACGTCCAGCTCTACACGTGAGGGGTGTCAAAGTCTCAC ATTGACTGGAGATATAGCCAAAATAGTTCTTATATGGGCAGCGCAATCCTCACTCCTGAGGCAGCTTTTGAGGTTGAGTT AGCCTTAACCCGAATTTTAAGCCAGTCAGTTTTATCAACATCTTATTCCACTCTGTATCTGCTAGTTCATGGTTTTTCTT TCAAATCATTCATTTTATTTTGACCTCTAAGTTTGAGGTGCGAATGAATTCAACAACCTTTCACGGAGACAAATTTTATT TCTGAACTCAGGCACCATGTCAGTTGTGAATCATGCAATAACATGTTTTAGATGATGCAGTGCCTGAGGTATCTCAGTGC ATGAATCTTTTCACCAGCTAGAGGCGAATAGCAGGCTCTTGCATTGCAGTCAACAAGGAAAGGAGGGTCCAAAGGAGTTG AAATGGGTTATTACACAACTAGAAAACTCAACACAACTGAAAGTGAAGTTACTTCTAAACTAAATAAATAAATCCTGAAT TATTGTGCTTTATTCATTCTTGAATTTTAAATAATTAAGATTACAATGTATTAAAATATTGAGTAACCGGACTTGAGTTC AATGGCAAGGTCAGTGGTCAGGCATTAATGTTCAGGAATGCTTTTCGTAAGAGAAGAAGTAATCATTTTTTTTTATCCAA AGAACTCTTAGAATTTAAAAAGCTGACAGCAAACTATTTTTACCTCAGGATAAAATTATGAAAACGTGAAAAAAAATTAA AGCATACTACAGATGAACTTTGTGTCTGCTGTTTCATATTAGTACCTAGATATTCTTGCTTTCAATTGGAAGCATTTAAC TTAAATATCTGATTTGATTAATTGAATGTGGAACCTTTATGACTTTCAGATGTATCATGATTGGCATTTAAATAAAATAG AAGCCCAGACTGATCAGAAATCAAATGCACTCAAACACGGATGCATTAGTGTGTGCATGTTAAAGATGAATCCAAAGAAA AGGTACTTTTATGCTTGCTGAGAATAGTTAACACTGTTTGGATTGTTGCAAGAAAGAATCCAAAGAAAAGGTACTTTTAT GTTTGCTGATAATAGTTTTACTGTGTTTCGGTTATTGCAAGAAACGTCAAAGAAGCTCCAATCATCCGTTGGCGATACAT TCAACCCAACACCAAATCAAACACAGCTTACTCCTTGCATGATTTTTGTCTCATAATTTGTATCCTAACGAATCATCAGA ATTCATTATAACCCATTATAATGGTTTTCCAAACATACATTTAGTGGTCAAGGGTTCTTTTATTACTTCTCTTCTGTAAA AAAAACATCAACCCTAGACATGCTTGTTCGTGACTATCATATGCTGTGCTAATTGGCCAAACCCTTCATACTAGTAGCAT TTTTTCTCTAAAAAAATGAAAGACAGTTGCTATAGCCAAACATTCTAGCAGGATTTATCCATCTCAAAGAAGAGCCCAAA TTCGCATAATATTTAAAAAAAAATAGAGTTCTACTGAAATCAACACTTAATAAAGTGGAATCCTCATCTGGATCTAGGAA AGCTCTCGGCTACGCTTAGCAGCAGCAACAACAGCATTCATAAGTGTTCCACGGAACCCACCTTTTTCCAACTCATGAAC GCCAGCAATTGTTGTCCCACCAGGAGAAGTAACATCATCCTTGAGCTGCCCTGGGTGCTTCCCAGTTTGGGTGACCATTG ATGCTGCTCCTAGTACCTGGAAAACACAAATCAAGAGAACAGTTAAAAGAACAAGTTTTTCCAATGTATGTAAGGTATGC AGATTTTTTCCCCAACAACATCATGTCCACTGAGAATCTTGCTGCCATATTCAAGCAGCAGCAATTTTATTAACCGTCTA ACCTTATTTATGTTTTCGGTCTTCTTTGGAGTACTAGTATATGCTTATCTTTTGCAGTCAAGTCTAAAAGATACATCTAT ACAATTTGGTTGCACTGTAGTAATAACTAGCGTTTCTGCGATCAGTTGGATGAAGATAATATAAACTAGATGGTTTAGAT TGATTTGACTGGTTACTTGCTCAATCTGGCCAGTATACACAGCAACATAGCTGACACTTAGTGAATCCCTTAAATCAAAT TCCAGGTTCATAGTAGGAAACCCTTATCTAGTATAGATTGAGTTGTGTTTACCGGACTTATAAACAGCACAGCTAATAAT ATCATTAGAAACATTTAATCCACAAAAGTATGAAACTGAAACATATGATTTTCTTAACAAAATGGATAACATTGGAGTAT AAGACAATGCAAGAAAAAGCATCAGATGAATAGTAAACACTCAGAAAAATAAAGGATGAAATACCCTTGTTAAATAGTTA AATGACAGTATTTCACTTCACTTACAGTCTGAGAAGCTAGACTTAATGCAAGATCACGTGGTAAGCCAGCAGCTACTCCT CCATCAGCCAAAGCCTCTACTGCTAAATAAACATAAGCAGGACCACTGCCACTGAACAATTTAAGAGAAGTAGAAGAAAG TTTAGTAAATAAATCAAAGTTCTTTTCCAACTAGACATGTATGCAGAGAGTATATATGCTTGTATAATTTCGGGGCTTTC AGGGATGGTGCAGTATAGCTATTGTCAGAACTCAGAACTTAGAAGCTACCACAAGACAATCTAAAAAGTAGGGGCAAGGT TCACGAATCACTAGAACAGTTGAGGTTGAATCAATTTACAATGGTAATTGGGATTGAATGTATAGGCATTACAAAAAGAA GGATAGTTGGACAGGTGCGGAGTTTAGAGTAGAGGCCAGAGTTTAGTACCCATGTTCACACACAACTAAAACAGAAAAGG ACAATTATCACCCAGCAGAAAATTCAGATTCTAGACATATTTTGTTCTCACAAATGTAAAGAGCTTAGAATTGTACGGGC ATATTGTGACTTGAACCTTCTTATCCTGTCCTTGTACTAGTATCATATCTTAGTATGTTACCTCTAAGAAACTTTCAGTT CATCAAAGATAAAATGGAATTTCTTGAGCATTGCTTAGATAATATCCAGATAGAACTCTATCGTTGTAGAAAATGATCTA CATACCTCAGGCCAGTTATTGCATCAAAATACTTTTCATCAGCTTTCCATATTTTCCCGATTGAGCCAAATAATTTGTTT ATAAGATTTCCATCTTCTTCTGTAGCAGCTGCCCCCAAGCTCATAACTGTGATAGTTTATCTTAAGTTAATCTATGCATG CAACTTTATAACTGTCAAATATGCAACTTGATAAAGAAATAGTTGCTGTAAGCAATAACCATTGTTTCCTAGAAAAGAAT ACAAAATACAGAATTCCCATAATTAATAGAAGGCATGAAAGAAGCAATAACTTGTAATTTATGAAAGAAGGCCCTCATAT AGTTGAGAATGTTAAACCCATGCAATTCATGCATCTAAGACCAAATGATCAAACTTTAATAAATGATCAAACTCTAAGAA AAAAAAAGGAAGAAAGAAATGCTGAGACTAAATGATCAAACTTTAATAAATATACATCTAAGAGACTACATTTTGGGAGC TGTAAAACCCACTCTCCATGAAATTGAAGAACAAGGTGACTAACAAAAACTATTTTAGTCATTCTCATTCATGAGTAACA TCCAACATCTTACAGTCATAATGAATATTCTGAAACCAATAAGACTGCTAACTGTAACTAGCGACTTAGAATTAAGAAAG TCAATTATGGAACTGCCAAGTTATACAAAACAAGTCACATAGCACCCATTCTAAACTCTCAACACAGAGAAAAAAACTTG AAGAACAGAACACAATATGCTCTAAGACATAGTTATAAAAAGGCAATACCTGACGCTGCCTCGCCAACAGCAGCAGGTGT ATTAGGCATCACCCTTATAAATCTGTTGTGACCAGCCCATTCCTACATTTACAGAAACAACCATTTCCATAAAAATATCC AACCTAATTAAATCTGCAAGGCTAAAGAAACGGAAAGTAACTAAAAACTACTTCCACAAACCATGTAATATATGGGATTT AAAATACTCTAAAGTGAGGGTTATATTTACAATACAAAATGCAAGTTGATTCAAACCCAGTTCACATTAACTTTTTACTA ACAAACACTTGAATGAAAACAAAAAAATTGAAATAATCTTGTAATCAAGATAAAATTTCTAATAATAGATTCTGCTTGAG TTCAAATCAGCTTGTGCACCTCCACTTTTTCAAGATTTCCTTCATCTAACTTCTCCACAACTAACTATAAACTTAAATAG ACTTAGTGCATGTTTGGACCACGGTGAGTTAAAATCACAGTAAACAGAAGCAACTTCTCTTGACTTTTGTAACTGTATAC CGTGATTTTGACTTTCCTCGTGTATCCAAACATGCACTTATTTACCTGTTTAAAACCAAATACTTAGCCATAAGAAGCAA TTCAGAATTTTCCTTAAGCTTCTTTTTTTATTTGCCAATAATCATATTAACAATAACAATTAACAAGCCATGTAAAAGTG CAGATATTCAGAATAAGAAAACAGCTGTGTTGTGTAACCTGAAGATCTTTCAACTTGACTCCAGCAGCAACAGAGACCAA AAGCTTGTTCTTCGTCAAGAGCGGCTTCAACTTCAACACCGCATCTTTCACTGCAACAAACACAAACTCTTCAATGAAAA ACGAATCTAGAGCAAGCCGAAATCGACATTGAGATCGTGTGGCAATACCTACTTGAGGCTTCACGGAGAAAATGACGACG TTGCTTTCCCGAACAACCTGGAAACAGAGAAACAAGCAAACGAGTTGGTTCGAATTCGAGAGAGAGGGAAGAGGAGAAGG AAGAGAAGAAGGGAGAGTGGAATACGTCGTCGTTTGAGGCGAGGACGGTGACGCCGATGGCTTCGAAGGCGGCGCGGCGA GCTGGGTTGGAGTGAGCGGTGCGGATACGAGACGGTGGCAGTACGCCGGAGCGGACGGCGCCTTTGGCAATGCTTTCGGC CATTTTTCCAGCGCCGATGAAGCCGAGTGTGTAGGAATCGGCGGGGATCGGAACGATTTCCATGTTGGAGTGTTGAATTG TTAGTTTCAGAGAAGAGTGTGAAGTGACGACGCAGATATAGAGAGAGAGGTTTGGTTGGCCACTCTTCAAGTGTACACGT GATCAAGATACTTGAGGGTTCTATATTTCTTTATTATTGTTAGCCTTCTTGTTATTATGACTCACCAATTTCTTGGCTCA ATAAAAATAATATGAATAATTATATCTTCACACCTCAGACTCATTTCTGAGGTGTGAAGAGGTGGAGGAAGAGAGGAGAA AGAAAGTAAAGATGTGATAGGTGATTTGATTGATAGAGAAAAGAAAAGTAGATAGAAATGAAGGTGGAAAATAAGTAAAG AGGTGTATATATATCATAACTTTTTAGAGAGTCTCTATTATATTTTCTTTCTTTTTTGTAAGGTGGCTTGTTTTTCTGAT TGTGTTAGAGTTAGTTGAGGTGGTGATAGGATTGCAAGATGTGGCTCAGTTCTGGCATTGAGATGTGATTCTTTAGATTC AGGACATGCTTTATTGTGATTGATAAATTTATGTGTGTCAGCTCCTACGACAGCGTAATATGGCGGTTGATACATTTGCT TGAGTATGCAACTAGAACTAACTGCCTTTGGCGTGTTTTGAAGTTGCCGCCTACAAGTGTGGTGTTCTTGCCGTGTCAGG ATGTTCTAGTTTAGTTGGTTTATTTTTACATTTGTAACAAAAAAAAATCTTTACTTCTAGTTTTACATGTGTTCATAATG AAACCG 

CDS sequence (LotjaGi1g1v0665500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATACTTTGCTCAAAACACCTAACAAGCTTGGATTTTTGCATCCACTTCATGGTTATTCAGAGAAATTGAACAATTC AGGGTCCTCTAGGTTGGAGTTTAGGTTTGGTTCCAAGAAACCAGTGGTGAAGTGGGGTGGATGTGGTGGTGGTTTGAGGG CTAGTAGCAGTGCCCTTCTAGAGCTTGTTCCAGAGGTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCG ATGAAGGGAGCTGTTGTCGATCTCGCGGTTGTGGGAGGAGGCCCTGCAGGGCTTGCAGTTGCTCAGCAGGTTTCTGAGGC AGGGCTTTCAGTTTGTGCAATTGACCCAAACCCTAGGTTGATTTGGCCCAATAATTATGGTGTTTGGGTGGATGAATTTG AAGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGTGCTGTTGTCTACATTGATGACAAAACAAAGAAGTAT CTAGATAGACCTTATGGTAGGGTTAATAGGAAGCTGTTGAAGTCAAAGATGCTGCAAAAATGCATTTCAAATGGTGTCAA GTTTCACCAGGCTAAAGTCATCAAGGTTATTCATGAGGAATCGAAGTCCATGTTGATTTGCAATGACGGCGTCACTATTC AGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATCTCTTGTTCAGTATGATAAGCCTTATAATCCAGGTTACCAA GTTGCCTATGGGATTTTAGCTGAGGTTGAGGAGCACCCGTTTGACGTGGATAAAATGCTTTTTATGGACTGGAGAGACTC ACATCTGGACAATAATATGGAGCTGAAGGAGAAGAATAGCAGAATACCCACTTTTTTATATGCAATGCCCTTTTCATCCA CCAAGATATTTCTTGAAGAAACCTCTCTTGTTGCACGCCCTGGATTGCGTATGGATGATATACAGGACAGAATGGTTGCT AGGCTAAAACACTTGGGCATTAAAGTGAAGAGCATTGAAGAGGATGAGCACTGTGTCATTCCGATGGGTGGCCCCTTACC GGTTCTCCCGCAAAGAGTTATTGGAATCGGTGGTACTGCCGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGA CCCTAGCTGCTGCTCCTATTGTTGCTAATGCTATTGTTCAGTACCTTGGTTCTGATAGAGGCATCTCAGGAGATGGATTA TCTTCACTAGTGTGGAAAGATTTATGGCCCATCGAAAGGAGGCGGCAGAGGGAGTTCTTCTGTTTCGGTATGGACATCTT ACTCAAGCTTGATTTACCCGGCACGAGGAGATTTTTTGATGCATTTTTTGATCTCGAACCTCATTACTGGCATGGATTCC TATCATCAAGACTGTTTCTTCCAGAGCTGCTAGTTTTTGGTCTCTCTCTATTTTCTTATGCTTCTAATACTTCTAGGATA GAGATTATGGCGAAGGGAACTGTTCCTTTGGTAAATATGATCAACAACTTGATACAAGATAAAGAATAA 

Protein sequence (LotjaGi1g1v0665500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTLLKTPNKLGFLHPLHGYSEKLNNSGSSRLEFRFGSKKPVVKWGGCGGGLRASSSALLELVPEVKKENLDFELPLYDS MKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDKTKKY LDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSMLICNDGVTIQATVVLDATGFSRSLVQYDKPYNPGYQ VAYGILAEVEEHPFDVDKMLFMDWRDSHLDNNMELKEKNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRMVA RLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGL SSLVWKDLWPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGLSLFSYASNTSRI EIMAKGTVPLVNMINNLIQDKE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 24 501 478 1.1E-282
PANTHER 24 501 478 1.1E-282
Gene3D 81 419 339 1.8E-24
SUPERFAMILY 85 469 385 2.02E-30
PRINTS 87 109 23 4.7E-5
Pfam 87 479 393 9.4E-145
TIGRFAM 87 482 396 1.5E-153
PRINTS 218 227 10 4.7E-5

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0665500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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