Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673800 |
| Transcript ID | LotjaGi1g1v0673800.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|I3SFY0|I3SFY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0673800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123961973..123966474) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTATAGTGTAATCCGGTGCTGCTTTCCTAGCTATTTGTATGGGCCTGGCCCTTTCTATCTTTCAATATATCAGGAAC CTTCGACCAAAAAAATAAAAATAAAAAATAACCTTAACTTGTAACCAAAAAAAATAACCTTAACTAATAATCTAATAAGG CGAGTAGAAAAGAAGAAGAAGACTGGGTTCCGCACTTTGCTCCGGAGGATCAACTCTCAGGCACAGTTCCGCACTTTGCT CCGTCGCTTGCAATCGGAGGAGAAGCCGGAGAGGTAGCAGCTCATGGCGATGACAGTACACGGTACGTGCTTCAATTTTC CCTCAAAACCATCCATTTCTCCCTTCTCACTCCGATTCCGATTAGGTCACAATTACTTTCACACCCATCACCCATCACTG CAACTAGGGTTATGCAATTTTCCCCTCGCTATTGGGTTAGGGTCATGGTTGATACTTCTATGTTCCTGTTAGGTCACTTC CCAAAGAGAATCGAAAATCAATGAAATTGAAATTGCTCTAACAACATACAATTCCACATAACAGAATAGGGAAATTGATA CTAGTCCTGTTAATTTCATTTCATTGATACTAGTCCTGTTAATTTCATTTCAAGCTGCTTACTTTTTGTTATAATTTTTT CCTCAATGCATATATATATATATTTTTTTGTTTTAATCATGTTGCTAATTCTGTCCTGTATCTGATGTTACGAATCTGGC GTTACGGGAATGTTCATGTCTTTACAGTGTAAGTTGAAAAATATCACATGATTTATTATCTTACAAAATGAAGCAAATAA ACTTATTAACTTTTTTTTCTTTTTATTAATGTGTAGCCTTGCTGGGCTCGCCTTTATGTTTTCGGCCAGCATTTTGCTGC AGATTCTGGTATGCTTTCGACAATGAGACTCATAATGCTTATATTCTAGTGATGTCTGTTATGTTGGCAATTATGTTGGC TCCAACTTTGAAGCAATTATATTTTTTTGTAGACTATTTTGTTTAATTTTGAATGCTTTTAAAACATATCAAAGCATCTA TGAAGTACTCTAGAAGAGTACTAGGTATCACATGATATTTTTTACCACATAAACAGTTCAAATTCTTGTTAAATATTGGG AGAAAAATTCGTGTATTACATTCATCAAGTGAAACTGTACGCATTATCTTCCTGTACAGCATTGCTATATATACCGGTCA TTTAACCCTACAAGATTGCTGTCTATCATGCCGAAAATTTTGTTGTTCTATTACATGAAACTTAGGACTTAGGAGTCATT GATTTCATTCAGAATATATTCAAGATTTTTAGATGGGAATGAAGGAATGGTTCATAAAGGAAAAAGTGGGAATGGAAGGA GTGGGAAGTAGAGAGAAGAATCTTTCCATTGTTTGGATGTTTGATGAGGCACAAAATGGAATGAGAAGGATTGTAATGTT TTGAAACTTAATGTATCTTTGATGAATATAGGATGAACAGATTGTGAGAGTTACACGTAGGACAATCAGGCCTTTCGTAG TGGTACCCTATTCAGACAAAAGACTGCGTGTTGGTAGGACTGTGCGGGATTATTGGGGAAGAACGTGAAATTGGGGAATT GTTGATATTCAAGAGTTGACAACCTGCATCTCTAATGAATTGAGTTAGCTACGGCTCATTCTTTCTTCTTCTACATATGT CGACCCTCTTCCGATTCCCTCACTCACCCTGACCCCCTGTCTGTTGCCATCCAGCTTTGTCAGAGACCCACTCCTTAACT CAAGCTCTTACAGTCAACATTCACTCTCACTCCCTCCTTGTCACCTGAAGCTCAAGTTCAAAGGTTTTCCATAACTATCT TTACCATCTTTCATCTTTCTGTAATTCTTTTCCTCAGCACTCTTGTGTCGTGCAAGTGTTTCAAGTTCCCCGCTCTGTTC ATTCCTCAACCTGCGTGTGTGTCCTCACTCTTCTTTCTTTTCCCCCATAAAACTCCTAAGTTGTGCTCATTTTTTAGCTT CATTTGAAATACGCCTTTGTGGTGTATCGTTATTTTTTTTCCATTCTATTATCATTATGTTATTATCTTACATAATTATT ATCAAATAATAAATTAAGGTAAAAGATATTACTGCAAAATAAATATTTAAACAATTTTACTTTAATTCTAGTAATGTTTT TGCACTTACGAATTTATTATGCAATTCTTTTTATAAATATGTAATTTCATTTTTTTTGTATGATCTTACGATCCATGTTA CGATAACACATTTTAATGATCTTTCACCTCTATTCCGAATCTTAGGTAGGATCTCGATTTTGATAAAATTGGTGGGAGTT GACCATGGTGAGGTGTGAGTTCTGGTTTGAGTTGTGGGTGGGGCACTGTTGGTGGTGGTCTTGAGGTCGAAATGGACTGT GCATAGGTTGTAAATTTTGTTTTTATGGTATTTTGTTTCTTTTGATCATGTATGGAGATGGATAAAGGATGTGCATGAAT GATGGAAGCAATAGGTGTGCCTGTGAGGAAGGGAAAGTGCAGAAAAATGGAATTGAAATTTAGTATACCTTGTGTTGTCA AAATTTTATGTATTTGAAATGAGGAGTTAGTGAGTTACTGCCTGTAACTTTGACTTGTAACTTTTGAATTATATGCAAAT TTCTGATTTATTTTCAATTTCAATTGAAATTTAATGAAATGTCTTAGTATTCGTGCTATGATCATATGACTTATGTGTGA GTCTCAGGCTGTGATCACACATTGAATTTAACCACCGCTGCTGGTAACGTCTCTGCTTATGTCTTGAATTTTACAATGTT CATGTTTATAGGAAGAGGAGAGCATGTTATTGGGCTCAGCATAATTTGCGGGTTATATGTATTAGAAAGAGCGGAGGAAA TAATTGTTGAACTCTGAGCATGAGTACTCAAAGTTGGAGCAATAATTTCAGGCACAAAATGCATTGGGAGAGGATTGGGT GGGATTCCATGGGATGGGGGGCCAGCCCATGTTCTATGCCACAAATTTGGGTTGAATAGAAAAAAATAAGAAAGATGAAG ATGTATCTGAATAGGACTTTCTTTGATTTTGTTTTTTATGATGATATGGTTTATACATGATCTAGTTGAAATATTAAATA CAGAATTCTTATATAGCGGCACATAGACTTTTATCTGGTCTTTAGAATGCACATTTACAACTGTATCCATTTGCTATGGC AGGCATGCGCTCTATACAACAATTGGTGGCCCATGTTGTCAGGTGATTTAGTCTTTTCTGCTGGAAGTCTTATTCATTAG TTGGAAAATTCTAATAGTGAGAACATTGCACCTGCAGCTCTAATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGG AGGAGGATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGGTAAGTGTCTCTGTTGCCAATTAGATCTGAGAAATGTT ATCTGGTTTTATATCAGAACATTTTTCATGCAGTTAGCTTTTGGGTTATCTGCTATTCTATTGCATGCCATGGGCCACTT ATTATTTATATTCATATATATGAAATTTTCCATTCAATATTAATGAGTGCAGTGACTAATTTTGCTGGTTCTCAAGACGA GTAAATATAAATATATAATATCTGGTATCATTGTTGCAGATGGATGGATGCAGCAAAATTTATGACTGGAGCATCAGCCA TGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCG TTCTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATTGGTAATAGCAAATTCCAGAAAG TTCCTGCATCCTATAGTCATTAGGGTTAGTTACCCTTAAAAAATGAAACCTAATTGTGAAATGTATGACAATCATGGGAA AAGAACTAAAGAAGTGTATGATCTAACATCTGTAAAGCTCTGCAGTTATTGTATTTTCGTCAATTTGTATTTTTGTTTAT TTCTTTTTTTGAGAATAGTCAATTTGGGTTCTTGTTTTAATAAGATGTATGAAAACTTTCATCCATGAGGTGCACATAAC TTCCATAGGGTTTGTAGCGCCATCCATGTATAACACAGAACTCCATATATACATACGTTTATGCATGAGTGAATAGTCGT CTCAATCTCTGAAAAATATGGATTTGTTCTTAAGTTCCTAAAAGACGAGTACCCCGAATGATAATTAAAATTATATGTTT TTTTTTTAATTCAGATTAAATTGATTCTTATCTTTCAGGGATTGTATCAAACCTTATTGATCTTTAATCATAATTCAGGT ATTAAGGCTTGGAAGAGTTTATTTCAGTTTTTTTTGTCTCAACATGGCAAAGTTTTGTACATCAAATATGGTCCAGTAGT GATCTGGTGCTGTTAACTGTGAACAATATCTGCATACTTCAGGCCTACATGCAGCTACTCAGAAATTTCTCAACTAAATG AACTACAAAAAAAGATAAATTC
CDS sequence (LotjaGi1g1v0673800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACGAATCTGGCGTTACGGGAATGTTCATGTCTTTACAGTCCTTGCTGGGCTCGCCTTTATGTTTTCGGCCAGCAT TTTGCTGCAGATTCTGGCATGCGCTCTATACAACAATTGGTGGCCCATGTTGTCAGCTCTAATGTATGTGCTGGTACCTA TGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGATGGATGGATGCAGCAAAA TTTATGACTGGAGCATCAGCCATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGC AATGCTCATTGAGCTTGTATCGTTCTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATT GGTAA
Protein sequence (LotjaGi1g1v0673800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRIWRYGNVHVFTVLAGLAFMFSASILLQILACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAK FMTGASAMGSIAIPIILRHAQMIETGAMLIELVSFFIFVCTVMCFHQASLDDDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 37 | 26 | - | – | |
| PANTHER | 14 | 133 | 120 | 2.3E-58 | ||
| PANTHER | 14 | 133 | 120 | 2.3E-58 | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Pfam | 17 | 127 | 111 | 5.5E-32 | ||
| Phobius | 38 | 43 | 6 | - | – | |
| Phobius | 44 | 66 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| TMHMM | 81 | 100 | 20 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| Phobius | 129 | 134 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0673800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…