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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673800 |
| Transcript ID | LotjaGi1g1v0673800.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting 55 protein; TAIR: AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|I3SFY0|I3SFY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0673800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123962652..123963305) extracted from Lotus japonicus Gifu genome v1.2.
CACATTTACAACTGTATCCATTTGCTATGGCAGGCATGCGCTCTATACAACAATTGGTGGCCCATGTTGTCAGGTGATTT AGTCTTTTCTGCTGGAAGTCTTATTCATTAGTTGGAAAATTCTAATAGTGAGAACATTGCACCTGCAGCTCTAATGTATG TGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGGTAAGTG TCTCTGTTGCCAATTAGATCTGAGAAATGTTATCTGGTTTTATATCAGAACATTTTTCATGCAGTTAGCTTTTGGGTTAT CTGCTATTCTATTGCATGCCATGGGCCACTTATTATTTATATTCATATATATGAAATTTTCCATTCAATATTAATGAGTG CAGTGACTAATTTTGCTGGTTCTCAAGACGAGTAAATATAAATATATAATATCTGGTATCATTGTTGCAGATGGATGGAT GCAGCAAAATTTATGACTGGAGCATCAGCCATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGA GACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTG ATGATGATTGGTAA
CDS sequence (LotjaGi1g1v0673800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCAGCTCTAATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAATTTCTGATAAG CCGTGATGGTGGAGGATGGATGGATGCAGCAAAATTTATGACTGGAGCATCAGCCATGGGGAGCATAGCCATTCCTATAA TCCTTAGGCATGCTCAAATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTGTATGTACTGTT ATGTGTTTCCATCAAGCGAGCCTTGATGATGATTGGTAA
Protein sequence (LotjaGi1g1v0673800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFMTGASAMGSIAIPIILRHAQMIETGAMLIELVSFFIFVCTV MCFHQASLDDDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 86 | 86 | 7.7E-19 | ||
| PANTHER | 1 | 91 | 91 | 1.5E-41 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 91 | 91 | 1.5E-41 | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 27 | 37 | 11 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 38 | 55 | 18 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 67 | 86 | 20 | - | – | |
| Phobius | 87 | 92 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0673800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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