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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673800 |
| Transcript ID | LotjaGi1g1v0673800.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|I3SFY0|I3SFY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0673800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123962369..123966336) extracted from Lotus japonicus Gifu genome v1.2.
CTTAACTAATAATCTAATAAGGCGAGTAGAAAAGAAGAAGAAGACTGGGTTCCGCACTTTGCTCCGGAGGATCAACTCTC AGGCACAGTTCCGCACTTTGCTCCGTCGCTTGCAATCGGAGGAGAAGCCGGAGAGGTAGCAGCTCATGGCGATGACAGTA CACGGTACGTGCTTCAATTTTCCCTCAAAACCATCCATTTCTCCCTTCTCACTCCGATTCCGATTAGGTCACAATTACTT TCACACCCATCACCCATCACTGCAACTAGGGTTATGCAATTTTCCCCTCGCTATTGGGTTAGGGTCATGGTTGATACTTC TATGTTCCTGTTAGGTCACTTCCCAAAGAGAATCGAAAATCAATGAAATTGAAATTGCTCTAACAACATACAATTCCACA TAACAGAATAGGGAAATTGATACTAGTCCTGTTAATTTCATTTCATTGATACTAGTCCTGTTAATTTCATTTCAAGCTGC TTACTTTTTGTTATAATTTTTTCCTCAATGCATATATATATATATTTTTTTGTTTTAATCATGTTGCTAATTCTGTCCTG TATCTGATGTTACGAATCTGGCGTTACGGGAATGTTCATGTCTTTACAGTGTAAGTTGAAAAATATCACATGATTTATTA TCTTACAAAATGAAGCAAATAAACTTATTAACTTTTTTTTCTTTTTATTAATGTGTAGCCTTGCTGGGCTCGCCTTTATG TTTTCGGCCAGCATTTTGCTGCAGATTCTGGTATGCTTTCGACAATGAGACTCATAATGCTTATATTCTAGTGATGTCTG TTATGTTGGCAATTATGTTGGCTCCAACTTTGAAGCAATTATATTTTTTTGTAGACTATTTTGTTTAATTTTGAATGCTT TTAAAACATATCAAAGCATCTATGAAGTACTCTAGAAGAGTACTAGGTATCACATGATATTTTTTACCACATAAACAGTT CAAATTCTTGTTAAATATTGGGAGAAAAATTCGTGTATTACATTCATCAAGTGAAACTGTACGCATTATCTTCCTGTACA GCATTGCTATATATACCGGTCATTTAACCCTACAAGATTGCTGTCTATCATGCCGAAAATTTTGTTGTTCTATTACATGA AACTTAGGACTTAGGAGTCATTGATTTCATTCAGAATATATTCAAGATTTTTAGATGGGAATGAAGGAATGGTTCATAAA GGAAAAAGTGGGAATGGAAGGAGTGGGAAGTAGAGAGAAGAATCTTTCCATTGTTTGGATGTTTGATGAGGCACAAAATG GAATGAGAAGGATTGTAATGTTTTGAAACTTAATGTATCTTTGATGAATATAGGATGAACAGATTGTGAGAGTTACACGT AGGACAATCAGGCCTTTCGTAGTGGTACCCTATTCAGACAAAAGACTGCGTGTTGGTAGGACTGTGCGGGATTATTGGGG AAGAACGTGAAATTGGGGAATTGTTGATATTCAAGAGTTGACAACCTGCATCTCTAATGAATTGAGTTAGCTACGGCTCA TTCTTTCTTCTTCTACATATGTCGACCCTCTTCCGATTCCCTCACTCACCCTGACCCCCTGTCTGTTGCCATCCAGCTTT GTCAGAGACCCACTCCTTAACTCAAGCTCTTACAGTCAACATTCACTCTCACTCCCTCCTTGTCACCTGAAGCTCAAGTT CAAAGGTTTTCCATAACTATCTTTACCATCTTTCATCTTTCTGTAATTCTTTTCCTCAGCACTCTTGTGTCGTGCAAGTG TTTCAAGTTCCCCGCTCTGTTCATTCCTCAACCTGCGTGTGTGTCCTCACTCTTCTTTCTTTTCCCCCATAAAACTCCTA AGTTGTGCTCATTTTTTAGCTTCATTTGAAATACGCCTTTGTGGTGTATCGTTATTTTTTTTCCATTCTATTATCATTAT GTTATTATCTTACATAATTATTATCAAATAATAAATTAAGGTAAAAGATATTACTGCAAAATAAATATTTAAACAATTTT ACTTTAATTCTAGTAATGTTTTTGCACTTACGAATTTATTATGCAATTCTTTTTATAAATATGTAATTTCATTTTTTTTG TATGATCTTACGATCCATGTTACGATAACACATTTTAATGATCTTTCACCTCTATTCCGAATCTTAGGTAGGATCTCGAT TTTGATAAAATTGGTGGGAGTTGACCATGGTGAGGTGTGAGTTCTGGTTTGAGTTGTGGGTGGGGCACTGTTGGTGGTGG TCTTGAGGTCGAAATGGACTGTGCATAGGTTGTAAATTTTGTTTTTATGGTATTTTGTTTCTTTTGATCATGTATGGAGA TGGATAAAGGATGTGCATGAATGATGGAAGCAATAGGTGTGCCTGTGAGGAAGGGAAAGTGCAGAAAAATGGAATTGAAA TTTAGTATACCTTGTGTTGTCAAAATTTTATGTATTTGAAATGAGGAGTTAGTGAGTTACTGCCTGTAACTTTGACTTGT AACTTTTGAATTATATGCAAATTTCTGATTTATTTTCAATTTCAATTGAAATTTAATGAAATGTCTTAGTATTCGTGCTA TGATCATATGACTTATGTGTGAGTCTCAGGCTGTGATCACACATTGAATTTAACCACCGCTGCTGGTAACGTCTCTGCTT ATGTCTTGAATTTTACAATGTTCATGTTTATAGGAAGAGGAGAGCATGTTATTGGGCTCAGCATAATTTGCGGGTTATAT GTATTAGAAAGAGCGGAGGAAATAATTGTTGAACTCTGAGCATGAGTACTCAAAGTTGGAGCAATAATTTCAGGCACAAA ATGCATTGGGAGAGGATTGGGTGGGATTCCATGGGATGGGGGGCCAGCCCATGTTCTATGCCACAAATTTGGGTTGAATA GAAAAAAATAAGAAAGATGAAGATGTATCTGAATAGGACTTTCTTTGATTTTGTTTTTTATGATGATATGGTTTATACAT GATCTAGTTGAAATATTAAATACAGAATTCTTATATAGCGGCACATAGACTTTTATCTGGTCTTTAGAATGCACATTTAC AACTGTATCCATTTGCTATGGCAGGCATGCGCTCTATACAACAATTGGTGGCCCATGTTGTCAGGTGATTTAGTCTTTTC TGCTGGAAGTCTTATTCATTAGTTGGAAAATTCTAATAGTGAGAACATTGCACCTGCAGCTCTAATGTATGTGCTGGTAC CTATGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGGTAAGTGTCTCTGTTG CCAATTAGATCTGAGAAATGTTATCTGGTTTTATATCAGAACATTTTTCATGCAGTTAGCTTTTGGGTTATCTGCTATTC TATTGCATGCCATGGGCCACTTATTATTTATATTCATATATATGAAATTTTCCATTCAATATTAATGAGTGCAGTGACTA ATTTTGCTGGTTCTCAAGACGAGTAAATATAAATATATAATATCTGGTATCATTGTTGCAGATGGATGGATGCAGCAAAA TTTATGACTGGAGCATCAGCCATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGC AATGCTCATTGAGCTTGTATCGTTCTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATT GGTAATAGCAAATTCCAGAAAGTTCCTGCATCCTATAGTCATTAGGGTTAGTTACCCTTAAAAAATGAAACCTAATTGTG AAATGTATGACAATCATGGGAAAAGAACTAAAGAAGTGTATGATCTAACATCTGTAAAGCTCTGCAGTTATTGTATTTTC GTCAATTTGTATTTTTGTTTATTTCTTTTTTTGAGAATAGTCAATTTGGGTTCTTGTTTTAATAAGATGTATGAAAACTT TCATCCATGAGGTGCACATAACTTCCATAGGGTTTGTAGCGCCATCCA
CDS sequence (LotjaGi1g1v0673800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTAGCCTTGCTGGGCTCGCCTTTATGTTTTCGGCCAGCATTTTGCTGCAGATTCTGGCATGCGCTCTATACAACAA TTGGTGGCCCATGTTGTCAGCTCTAATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGAGGATCCACTCAAT TTCTGATAAGCCGTGATGGTGGAGGATGGATGGATGCAGCAAAATTTATGACTGGAGCATCAGCCATGGGGAGCATAGCC ATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTGT ATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATTGGTAA
Protein sequence (LotjaGi1g1v0673800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCSLAGLAFMFSASILLQILACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFMTGASAMGSIA IPIILRHAQMIETGAMLIELVSFFIFVCTVMCFHQASLDDDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 121 | 119 | 4.2E-58 | ||
| PANTHER | 3 | 121 | 119 | 4.2E-58 | – | |
| Pfam | 5 | 116 | 112 | 3.9E-32 | ||
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 31 | 6 | - | – | |
| Phobius | 32 | 54 | 23 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 55 | 65 | 11 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 66 | 85 | 20 | - | – | |
| Phobius | 86 | 96 | 11 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| Phobius | 117 | 122 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0673800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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