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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673800 |
| Transcript ID | LotjaGi1g1v0673800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|I3SFY0|I3SFY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0673800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123962316..123966567) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGGGGTGGCGGCTGGTTGTCTTTGTTCAAACCCTAGCAGACAATTTTTTTGATTGTTCAAACCCCCCACAAAGAGCA ACTGTTTGTGTATCTCTTATAGTGTAATCCGGTGCTGCTTTCCTAGCTATTTGTATGGGCCTGGCCCTTTCTATCTTTCA ATATATCAGGAACCTTCGACCAAAAAAATAAAAATAAAAAATAACCTTAACTTGTAACCAAAAAAAATAACCTTAACTAA TAATCTAATAAGGCGAGTAGAAAAGAAGAAGAAGACTGGGTTCCGCACTTTGCTCCGGAGGATCAACTCTCAGGCACAGT TCCGCACTTTGCTCCGTCGCTTGCAATCGGAGGAGAAGCCGGAGAGGTAGCAGCTCATGGCGATGACAGTACACGGTACG TGCTTCAATTTTCCCTCAAAACCATCCATTTCTCCCTTCTCACTCCGATTCCGATTAGGTCACAATTACTTTCACACCCA TCACCCATCACTGCAACTAGGGTTATGCAATTTTCCCCTCGCTATTGGGTTAGGGTCATGGTTGATACTTCTATGTTCCT GTTAGGTCACTTCCCAAAGAGAATCGAAAATCAATGAAATTGAAATTGCTCTAACAACATACAATTCCACATAACAGAAT AGGGAAATTGATACTAGTCCTGTTAATTTCATTTCATTGATACTAGTCCTGTTAATTTCATTTCAAGCTGCTTACTTTTT GTTATAATTTTTTCCTCAATGCATATATATATATATTTTTTTGTTTTAATCATGTTGCTAATTCTGTCCTGTATCTGATG TTACGAATCTGGCGTTACGGGAATGTTCATGTCTTTACAGTGTAAGTTGAAAAATATCACATGATTTATTATCTTACAAA ATGAAGCAAATAAACTTATTAACTTTTTTTTCTTTTTATTAATGTGTAGCCTTGCTGGGCTCGCCTTTATGTTTTCGGCC AGCATTTTGCTGCAGATTCTGGTATGCTTTCGACAATGAGACTCATAATGCTTATATTCTAGTGATGTCTGTTATGTTGG CAATTATGTTGGCTCCAACTTTGAAGCAATTATATTTTTTTGTAGACTATTTTGTTTAATTTTGAATGCTTTTAAAACAT ATCAAAGCATCTATGAAGTACTCTAGAAGAGTACTAGGTATCACATGATATTTTTTACCACATAAACAGTTCAAATTCTT GTTAAATATTGGGAGAAAAATTCGTGTATTACATTCATCAAGTGAAACTGTACGCATTATCTTCCTGTACAGCATTGCTA TATATACCGGTCATTTAACCCTACAAGATTGCTGTCTATCATGCCGAAAATTTTGTTGTTCTATTACATGAAACTTAGGA CTTAGGAGTCATTGATTTCATTCAGAATATATTCAAGATTTTTAGATGGGAATGAAGGAATGGTTCATAAAGGAAAAAGT GGGAATGGAAGGAGTGGGAAGTAGAGAGAAGAATCTTTCCATTGTTTGGATGTTTGATGAGGCACAAAATGGAATGAGAA GGATTGTAATGTTTTGAAACTTAATGTATCTTTGATGAATATAGGATGAACAGATTGTGAGAGTTACACGTAGGACAATC AGGCCTTTCGTAGTGGTACCCTATTCAGACAAAAGACTGCGTGTTGGTAGGACTGTGCGGGATTATTGGGGAAGAACGTG AAATTGGGGAATTGTTGATATTCAAGAGTTGACAACCTGCATCTCTAATGAATTGAGTTAGCTACGGCTCATTCTTTCTT CTTCTACATATGTCGACCCTCTTCCGATTCCCTCACTCACCCTGACCCCCTGTCTGTTGCCATCCAGCTTTGTCAGAGAC CCACTCCTTAACTCAAGCTCTTACAGTCAACATTCACTCTCACTCCCTCCTTGTCACCTGAAGCTCAAGTTCAAAGGTTT TCCATAACTATCTTTACCATCTTTCATCTTTCTGTAATTCTTTTCCTCAGCACTCTTGTGTCGTGCAAGTGTTTCAAGTT CCCCGCTCTGTTCATTCCTCAACCTGCGTGTGTGTCCTCACTCTTCTTTCTTTTCCCCCATAAAACTCCTAAGTTGTGCT CATTTTTTAGCTTCATTTGAAATACGCCTTTGTGGTGTATCGTTATTTTTTTTCCATTCTATTATCATTATGTTATTATC TTACATAATTATTATCAAATAATAAATTAAGGTAAAAGATATTACTGCAAAATAAATATTTAAACAATTTTACTTTAATT CTAGTAATGTTTTTGCACTTACGAATTTATTATGCAATTCTTTTTATAAATATGTAATTTCATTTTTTTTGTATGATCTT ACGATCCATGTTACGATAACACATTTTAATGATCTTTCACCTCTATTCCGAATCTTAGGTAGGATCTCGATTTTGATAAA ATTGGTGGGAGTTGACCATGGTGAGGTGTGAGTTCTGGTTTGAGTTGTGGGTGGGGCACTGTTGGTGGTGGTCTTGAGGT CGAAATGGACTGTGCATAGGTTGTAAATTTTGTTTTTATGGTATTTTGTTTCTTTTGATCATGTATGGAGATGGATAAAG GATGTGCATGAATGATGGAAGCAATAGGTGTGCCTGTGAGGAAGGGAAAGTGCAGAAAAATGGAATTGAAATTTAGTATA CCTTGTGTTGTCAAAATTTTATGTATTTGAAATGAGGAGTTAGTGAGTTACTGCCTGTAACTTTGACTTGTAACTTTTGA ATTATATGCAAATTTCTGATTTATTTTCAATTTCAATTGAAATTTAATGAAATGTCTTAGTATTCGTGCTATGATCATAT GACTTATGTGTGAGTCTCAGGCTGTGATCACACATTGAATTTAACCACCGCTGCTGGTAACGTCTCTGCTTATGTCTTGA ATTTTACAATGTTCATGTTTATAGGAAGAGGAGAGCATGTTATTGGGCTCAGCATAATTTGCGGGTTATATGTATTAGAA AGAGCGGAGGAAATAATTGTTGAACTCTGAGCATGAGTACTCAAAGTTGGAGCAATAATTTCAGGCACAAAATGCATTGG GAGAGGATTGGGTGGGATTCCATGGGATGGGGGGCCAGCCCATGTTCTATGCCACAAATTTGGGTTGAATAGAAAAAAAT AAGAAAGATGAAGATGTATCTGAATAGGACTTTCTTTGATTTTGTTTTTTATGATGATATGGTTTATACATGATCTAGTT GAAATATTAAATACAGAATTCTTATATAGCGGCACATAGACTTTTATCTGGTCTTTAGAATGCACATTTACAACTGTATC CATTTGCTATGGCAGGCATGCGCTCTATACAACAATTGGTGGCCCATGTTGTCAGGTGATTTAGTCTTTTCTGCTGGAAG TCTTATTCATTAGTTGGAAAATTCTAATAGTGAGAACATTGCACCTGCAGCTCTAATGTATGTGCTGGTACCTATGCCTT GCTTATTCTTTGGAGGAGGATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGGTAAGTGTCTCTGTTGCCAATTAGA TCTGAGAAATGTTATCTGGTTTTATATCAGAACATTTTTCATGCAGTTAGCTTTTGGGTTATCTGCTATTCTATTGCATG CCATGGGCCACTTATTATTTATATTCATATATATGAAATTTTCCATTCAATATTAATGAGTGCAGTGACTAATTTTGCTG GTTCTCAAGACGAGTAAATATAAATATATAATATCTGGTATCATTGTTGCAGATGGATGGATGCAGCAAAATTTATGACT GGAGCATCAGCCATGGGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGCAATGCTCAT TGAGCTTGTATCGTTCTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATTGGTAATAGC AAATTCCAGAAAGTTCCTGCATCCTATAGTCATTAGGGTTAGTTACCCTTAAAAAATGAAACCTAATTGTGAAATGTATG ACAATCATGGGAAAAGAACTAAAGAAGTGTATGATCTAACATCTGTAAAGCTCTGCAGTTATTGTATTTTCGTCAATTTG TATTTTTGTTTATTTCTTTTTTTGAGAATAGTCAATTTGGGTTCTTGTTTTAATAAGATGTATGAAAACTTTCATCCATG AGGTGCACATAACTTCCATAGGGTTTGTAGCGCCATCCATGTATAACACAGAACTCCATATATACATACGTTTATGCATG AGTGAATAGTCG
CDS sequence (LotjaGi1g1v0673800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATGACAGTACACGGCCTTGCTGGGCTCGCCTTTATGTTTTCGGCCAGCATTTTGCTGCAGATTCTGGCATGCGC TCTATACAACAATTGGTGGCCCATGTTGTCAGCTCTAATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGAG GATCCACTCAATTTCTGATAAGCCGTGATGGTGGAGGATGGATGGATGCAGCAAAATTTATGACTGGAGCATCAGCCATG GGGAGCATAGCCATTCCTATAATCCTTAGGCATGCTCAAATGATTGAGACTGGAGCAATGCTCATTGAGCTTGTATCGTT CTTCATATTTGTATGTACTGTTATGTGTTTCCATCAAGCGAGCCTTGATGATGATTGGTAA
Protein sequence (LotjaGi1g1v0673800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMTVHGLAGLAFMFSASILLQILACALYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWMDAAKFMTGASAM GSIAIPIILRHAQMIETGAMLIELVSFFIFVCTVMCFHQASLDDDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 2 | 125 | 124 | 2.0E-58 | ||
| PANTHER | 2 | 125 | 124 | 2.0E-58 | – | |
| Phobius | 6 | 29 | 24 | - | – | |
| Pfam | 9 | 120 | 112 | 4.4E-32 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 30 | 35 | 6 | - | – | |
| Phobius | 36 | 58 | 23 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 59 | 69 | 11 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 70 | 89 | 20 | - | – | |
| Phobius | 90 | 100 | 11 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 126 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0673800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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