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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0693200 |
Transcript ID | LotjaGi1g1v0693200.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase; TAIR: AT3G09720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57; TrEMBL-Plants: tr|V7CHF2|V7CHF2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0693200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126098639..126104778) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTAGTTTTCCTTCTTCATCTTTCGTGTGCCGCACAATCAATTCAAACCTGACTAATACAGGTAATCTATTGCATTGC GACCATCCAACAAATGTGCTTGCCTTTTCTTACAAGTTTGTTATATATATCCTTTCAAAATCCAACATCTTGGTAACCTC CAAATTGAGTAGAAAATAAGTTGTAGATGTTGGTTGTCCTGATGTCAAACTTAATTAACCTCCACACTATTGAGTGTGTG AGCAATAACCCCCATTCTTCTAGCACCTCATGGTTATGGTCAATAACAAAAACAGCTAAGAGTACATGTTAACATGGACC CGTGATATCACTTCACATCCACATATAAAATAATCACTGACAACTCGGTTTCACTCAGCTTTTGTTTAGGTCGTAACTTT GCCTATAACACACAAATGTTTATTGAAGCGACTCTCCTTTTTTATTTCTACTATTGTGCCTATATGAGCAACCCGCCCAA TCTTTCATACCGGTTTTAAAAATCATACTCAACCTCCAAAGCCTACAAAATTAAAGTTCATTAATTACATATGACTCATA GTAAACAATCTAACTTTTATATTAACCTAAAATATAATTTTATTTAATTTTATAATTTTATGCTAATTCATTATTTAAAA TTATTTTATAATATTAAAATCATATCGTTGTTATTATAGGTCTAATCTCATTTTTTTTTTTCAAAAAGCAAAAGTTCATT ATAATAATATTGATTGTACTGTTTGGATACTTTGTTGCATATTCAGATACCAGTAGGATTTGAACCCTTATCTTATGAAA TTTTAATCCATCATCAAATACCATTTAGGCCATCCATATCAATTACTGTTCGGATTCTTGTAACTTCTCCTTTTCTATTA TATGAAATTCTTTCTCTTGCAAAATTTTTTTATTGAGAACTAGTCCTTTCAGCATGAACCGGTCAGGGTTCCGATTGAAC CGGCCGGTCCGGTCCAATTTTAAGAACATTGCTTGATATACGTTCTACACCACAGCTAGGTTATTGCCCTTTAAGCGGCT CTGCACCTCTCACTGATTCGCGCGCTCGCCACTTACCGCCGCTCGCTTACCGCCGCTTGCTCCGTCGTCGCCGCCGCATC TTTGACGGGGAGAAGAAGGTCGAGCTCGCTCTTACTTGAACCAGAGAGTTGTCAATCTAGTGAGTATTGTTCATGATTAC CTGTTTTTGCTTGTTGAATCATGCTAGTTTTATGCTTTGAACTCTGCAATTTGATTGCATAATTTGTAATTGATTGGGTT GGGGTTCTGCTAGTGTTGCTGTCAGATTTTTCGATTGTTAGCAAGTTTTGAATCATGAACATGTGAAACTTTTAGGTAGG TAATTGCTGAAGTTGGTGATTTGGAAATAGATTGATTGAACTCATGGCATGACATTGTACTAGTGAATTGTGATTCAACT GCTAACTCAGATTACTCATTGCGGAAACCCCTACTTGCTTGCTTGCTTTCATTGGCTTCCAATCCAAATGGCCAACGACT CGTTGTTTGCCGGCATTCATTTCGATAGAAAGAAGTTCGGCGCTGATATTGCCAGGTTCCAGGTAACAATATCTCGTTCG TTTCTTCCCATATGCCTTCATTTCATTTCAAAGTGAATGTCGCGTGCTAACAGTTATTCATTGCTTGAAAAGAAAAAAGA GAACGCTAACGATTCAGTGAAGATTTGGAGCGTGACTGAAGATGAAAGTGAGAAAACAGAAGATACAGTCAAGGAGAGAG CACCGTCTGTGAAGAAGAGGAAGCGCAAGAGAAACTCTCGCGGTATTCTCATTCTCATGCTTTATATCATGCCATGGCAT CCCTTGTATTAATATTCTTTATCTCACTTTTACTTTGTTTCTGTAAATGAATAGAAGAAACGGTTGAAGGGTTTAGTGTG TTTAGAAGTTCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACGATGATGAGTCCATTCGACTGAA GAAAGAAAAAAATAGACAACTTGAGGTTGAGTTCCTTTCTGTTTTGTGCAGTATACAACATAATTCTCCGCGCTATTAAG TTTGTGCAATGATTTCTCATCACTCACTTCCATTTTGGTCTGTTTTCAGCGGGATGCTCTCTTCAGGAAGACACATAACA TTCATGTCTCTGGTTATAATGTGCCATCCCCACTTCAAAACTTTGATGAATTGAAATCAAGGTATCTTTTATGAGAATAT TACATTATCCTCTGGAAACCACTTATTCTGTATGTCGTTTATTCTGCTTGTTATATTTATAAGAAACAGTTGAAAATCTT TATCAATTCTTTACAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACTTGGATTTAGAGAACCAACACCA ATCCAACGGCAGGCTATTCCAGTACTTTTACATGTATGGATTACATTCAATATTTTGGTCTTTAGAAAATTATTTATTGC TGAAATTTTGATCATAATTCATGCCCACTTGATATTTTCACCGAGATAGATGTTATCATAATATTGTTTTCTACTGCTGT TCTCCTTCACTGATTTGGGATAGGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTCTGGAAAAACCTTTGCTTTTGTG TGTCCCATGCTTATGAAGCTCAAGGTATTACTTATATTATCTCCAATGGTATTTTCAGTTCCCAACTTTCCATGTCCTTG ATCTTATAATCAACTATGTTTTACAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCCTTTGTCACACCCGTGAATTA TCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAGTTATTGACGAAACAACTTCT ACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCATGGCTATCCGAAGGA AAAAGGTTGATCTCAGCAGGTGTGTGATGATGGGAATTTCCTATTGATTTAACTATAAAATTCTTGAAATATCAATCAAG TAATCATCACATAACACATATTTCTGGTCCATAGGGAATGCCATTAAATGCTTGTAGAGATGATTTATAGCTGCTCTCTA TGTGTCAAGTTTACCGCGGTTTTGTGAAAGTAGACAAATAAACAGTTGATTTTTCAGCTGGCTCACAAACCAGAGACCCA GACGGTTTCAGTTCTGGGCAGTTGCTTTGTGTTAAGGTCACTTAATAGTTAATATAAGTACTAGTTCAGTTGTACAAAGG TATTTCTGAAATAGCATGTACTTTCATACAAGTTGGGAGAGTCCAATGTCTATTAAATATTCCACACAATTATTTGGTAA TTGTTTCCTCTTAATTAGGTGTTACCTATTGCAATGATAAAATTGATTGTGTATAACGATTTAAATGGCATGGCCCAACT GCAGTTGATGCAGCTCACTTTAGAGGTAAACTAATTACAATGCTTTAAGCATTACAATATTCTGCAGGATGCTTTGAGCT GTATCTTACATTGTGTCTGTAAGGTCAATAGTTGTCTAGTAGATATGTGATTTATTAAGCAGCCCTTTGCATTGATATTT TTTTCATTCCAACTATTTTGTGTTCTGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTATTTGAACCTGACT TGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAGTGCCACTTTACCT GATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGTAAGTTCATTACAA AAATTTACAGAACATGATGCTCCTTAGCATTACCTTAATGCGGTTCTGCTTCATTTAAATGTAAATTTGACATTTAATGC TCTTATATGAATCAGGAATACAGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACTGGAAGTGAAGAAGGAAAACTTC TGGCAATTCGTCAAAGTTTTGCAGAGGTACGTCTAGCTAAATGGCATTTGTCAGTCTGGTTTTCTTCTGCATCAAGGGCT TGTGTCCCATCCATGACTATACATTAGTCAGAGTAGGTTTGTTTGAAAAGATATCCGAAACATCACTGCAATTAATTATT AATATGTATTTTCTATTATTATTCTATCTTGTTTGTAGCCTGATGTCATTCTTGCTTATTGTGTGCTGCATATTTATTTC ATTGAACATTCTGTTTTTTTCTGTGTTTGGTGTTAACTGAAACATATCGTGAACATAACATGGAATAACGTGGTTGTACT TCACTTTAATATATTTCATATGGCTTATCAAATAAAAATTATTGCTGCTACACTTGCATTCCATTGAAACTTGTGGAAGA AGAGATGTAATGTTGTAGTGGTATTTTTTTAGTAGCTGGTCTTTGTTAACCAACCTTTTATTTTGCCTGCAATATCTTGT AGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGAC AACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGGTAGCTTTCAACCCCTTTAAAAGAACTAAAGTTTC TTATTGGAGAATTTGAAGAAAATCTTAAACATTTCTCACTTCCCTCTAGAAAGCTCCAAAATAAAAAGGGAAACCCATGA TGCAGCCAAGATCTGGTCCCTACTAGTTGTAGGGTGAAGATGTCAAATAATGATATTGCTATTGGCAACAATTTTTAATT TTTTTTTTGTACTTGGCTATTCTACTCATCATTATCATAGTTTGTGACAAACCTGTTTTAATATTCAATTCACAATTCCT GTTATCATCACCAATAATACTCTAGTACTAAAACATGTTAATCTAGTAGTTATTCTGATTTCAACTATGCTAATCTATTG AATTGTATGCAGCGAGAAAATGCTATTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCTACTGACGTGGTTGC CCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTTCTGCATATATCCACAGAA TTGGTAGGTTCCATGATATTAAACTATTATTGTTTTTACATTTGAAAAGAAATATTGAAGGGGATTATAGTTTGTCTAAT TCTTTCATGGAGCCTTTTTTGTAAATTATTATTTGCTTAATTTTTTGCTAAGTAGAAAATTTTGATTTTTCAATAGGTCG TTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACATTTTACACCGAGGAAGACATTCCCTTCCTGCGGAATGTATCTA ATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTGGTTAATGGAGTTGCAAAAAAAGAAGTGGAGGAGACATCGGCCA AAAAGAGATTCAATCTCTACCTAACCAGATATTTAAGCCTATGACCCCAGCAGAAAATGGGAACAAATTCTTAACCTTGA AATTTCTCTAGTAAACTCTCTCTATACGCCAGTAAACTGTGTTAAATAAGATATTTTGTTTCCCCCTTCCAAAACAATAG TAAATTTTAGCATGATGAGAAAGGTAAATCATGTTTTAGGCCATAGAGCAATGGGGTTGCGGGCAGTGTTCCCTGCATAA GTTCAAAGTTTAAACCATGGTGCTTATACACAACATATATCATGATAAATGTTGTCGTATGTAATGGGAAATTTTGTGCC TCGTCTTGTAGTGAACATTGAATTCTTTAATCCCTCGAATATCTTATTTTACCAACTTTAAGAAATTCCTTTTCATTGAA CTGATTTTAACATCATATGGATCGTTTTTGTTTTCAAAAATTGGACCTTCAATTGCCTAGTGTTGATTTTTTTTCCTCCT TTCATCATCGAAAGTCATTATTCTGTAGCCTTATGGTGAATGTGTAAATGTCATGGCTTTATTGGAGGGCCAGCATTGTT TAAAACATATGCCGTTTAGTATAAGTAGAAGCAATAATAAGCAATAGTTTGAGTTAGATAATTATTCAGCGATGGTGAAT TTTTTTTTGCACAAACATTAAATCAATTTTTTCTAATTTAACATTTGAATATAAGAAACG
CDS sequence (LotjaGi1g1v0693200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAACGACTCGTTGTTTGCCGGCATTCATTTCGATAGAAAGAAGTTCGGCGCTGATATTGCCAGGTTCCAGAAAAA AGAGAACGCTAACGATTCAGTGAAGATTTGGAGCGTGACTGAAGATGAAAGTGAGAAAACAGAAGATACAGTCAAGGAGA GAGCACCGTCTGTGAAGAAGAGGAAGCGCAAGAGAAACTCTCGCGAAGAAACGGTTGAAGGGTTTAGTGTGTTTAGAAGT TCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACGATGATGAGTCCATTCGACTGAAGAAAGAAAA AAATAGACAACTTGAGCGGGATGCTCTCTTCAGGAAGACACATAACATTCATGTCTCTGGTTATAATGTGCCATCCCCAC TTCAAAACTTTGATGAATTGAAATCAAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACTTGGATTTAGA GAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTC TGGAAAAACCTTTGCTTTTGTGTGTCCCATGCTTATGAAGCTCAAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCC TTTGTCACACCCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAG TTATTGACGAAACAACTTCTACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATT ACGCATGGCTATCCGAAGGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTATTTG AACCTGACTTGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAGTGCC ACTTTACCTGATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATAC AGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTG CAGAGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGAACTTGCATTT GACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTATTGATAACTTCAGAGCTGG AAAGACATGGGTTTTGATTGCTACTGACGTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATG ATTTCCCAGATTCTGCTTCTGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACA TTTTACACCGAGGAAGACATTCCCTTCCTGCGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTG GTTAATGGAGTTGCAAAAAAAGAAGTGGAGGAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAA
Protein sequence (LotjaGi1g1v0693200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANDSLFAGIHFDRKKFGADIARFQKKENANDSVKIWSVTEDESEKTEDTVKERAPSVKKRKRKRNSREETVEGFSVFRS SAHEPQLELNDEVQPDDDESIRLKKEKNRQLERDALFRKTHNIHVSGYNVPSPLQNFDELKSRYNCPSYLLRNLAKLGFR EPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKEPSRDCIRAVILCHTRELSAQTYRECKKLAKGKNFRIK LLTKQLLRNADFSKFPCDILISTPLRLRMAIRRKKVDLSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSIIRSLFSA TLPDFVEDRARELMHDAVRVIVGRKNTASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAF DNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFKAVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAIT FYTEEDIPFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSIST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 39 | 56 | 18 | - | – | |
MobiDBLite | 39 | 72 | 34 | - | – | |
PANTHER | 53 | 486 | 434 | 1.5E-83 | – | |
PANTHER | 53 | 486 | 434 | 1.5E-83 | – | |
Gene3D | 114 | 347 | 234 | 1.0E-66 | – | |
ProSiteProfiles | 139 | 167 | 29 | 9.618 | ||
CDD | 150 | 343 | 194 | 2.9675E-102 | – | |
SMART | 158 | 355 | 198 | 1.2E-46 | ||
Pfam | 163 | 327 | 165 | 2.3E-34 | ||
ProSiteProfiles | 170 | 340 | 171 | 25.662 | ||
SUPERFAMILY | 170 | 485 | 316 | 5.76E-59 | ||
Gene3D | 348 | 523 | 176 | 2.3E-51 | – | |
ProSiteProfiles | 351 | 512 | 162 | 23.5 | ||
CDD | 352 | 482 | 131 | 1.33527E-56 | – | |
Pfam | 369 | 473 | 105 | 2.8E-29 | ||
SMART | 392 | 473 | 82 | 7.3E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0693200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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