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LotjaGi1g1v0693200.3

Overview

Field Value
Gene ID LotjaGi1g1v0693200
Transcript ID LotjaGi1g1v0693200.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT3G09720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57; TrEMBL-Plants: tr|V7CJG4|V7CJG4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0693200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126100537..126104114) extracted from Lotus japonicus Gifu genome v1.2.

AACGGTTGAAGGGTTTAGTGTGTTTAGAAGTTCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACG ATGATGAGTCCATTCGACTGAAGAAAGAAAAAAATAGACAACTTGAGGTTGAGTTCCTTTCTGTTTTGTGCAGTATACAA CATAATTCTCCGCGCTATTAAGTTTGTGCAATGATTTCTCATCACTCACTTCCATTTTGGTCTGTTTTCAGCGGGATGCT CTCTTCAGGAAGACACATAACATTCATGTCTCTGGTTATAATGTGCCATCCCCACTTCAAAACTTTGATGAATTGAAATC AAGGTATCTTTTATGAGAATATTACATTATCCTCTGGAAACCACTTATTCTGTATGTCGTTTATTCTGCTTGTTATATTT ATAAGAAACAGTTGAAAATCTTTATCAATTCTTTACAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACT TGGATTTAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTTTTACATGTATGGATTACATTCAATATTTTGG TCTTTAGAAAATTATTTATTGCTGAAATTTTGATCATAATTCATGCCCACTTGATATTTTCACCGAGATAGATGTTATCA TAATATTGTTTTCTACTGCTGTTCTCCTTCACTGATTTGGGATAGGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTC TGGAAAAACCTTTGCTTTTGTGTGTCCCATGCTTATGAAGCTCAAGGTATTACTTATATTATCTCCAATGGTATTTTCAG TTCCCAACTTTCCATGTCCTTGATCTTATAATCAACTATGTTTTACAGGAACCTTCCAGAGATTGCATTCGGGCTGTTAT CCTTTGTCACACCCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCA AGTTATTGACGAAACAACTTCTACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGA TTACGCATGGCTATCCGAAGGAAAAAGGTTGATCTCAGCAGGTGTGTGATGATGGGAATTTCCTATTGATTTAACTATAA AATTCTTGAAATATCAATCAAGTAATCATCACATAACACATATTTCTGGTCCATAGGGAATGCCATTAAATGCTTGTAGA GATGATTTATAGCTGCTCTCTATGTGTCAAGTTTACCGCGGTTTTGTGAAAGTAGACAAATAAACAGTTGATTTTTCAGC TGGCTCACAAACCAGAGACCCAGACGGTTTCAGTTCTGGGCAGTTGCTTTGTGTTAAGGTCACTTAATAGTTAATATAAG TACTAGTTCAGTTGTACAAAGGTATTTCTGAAATAGCATGTACTTTCATACAAGTTGGGAGAGTCCAATGTCTATTAAAT ATTCCACACAATTATTTGGTAATTGTTTCCTCTTAATTAGGTGTTACCTATTGCAATGATAAAATTGATTGTGTATAACG ATTTAAATGGCATGGCCCAACTGCAGTTGATGCAGCTCACTTTAGAGGTAAACTAATTACAATGCTTTAAGCATTACAAT ATTCTGCAGGATGCTTTGAGCTGTATCTTACATTGTGTCTGTAAGGTCAATAGTTGTCTAGTAGATATGTGATTTATTAA GCAGCCCTTTGCATTGATATTTTTTTCATTCCAACTATTTTGTGTTCTGCAGAGTTGAGTATCTTGTCTTGGATGAATCC GATAAGTTATTTGAACCTGACTTGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTC CCTGTTCAGTGCCACTTTACCTGATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTG GCAGGAAGTAAGTTCATTACAAAAATTTACAGAACATGATGCTCCTTAGCATTACCTTAATGCGGTTCTGCTTCATTTAA ATGTAAATTTGACATTTAATGCTCTTATATGAATCAGGAATACAGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACT GGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTGCAGAGGTACGTCTAGCTAAATGGCATTTGTCAGTCTG GTTTTCTTCTGCATCAAGGGCTTGTGTCCCATCCATGACTATACATTAGTCAGAGTAGGTTTGTTTGAAAAGATATCCGA AACATCACTGCAATTAATTATTAATATGTATTTTCTATTATTATTCTATCTTGTTTGTAGCCTGATGTCATTCTTGCTTA TTGTGTGCTGCATATTTATTTCATTGAACATTCTGTTTTTTTCTGTGTTTGGTGTTAACTGAAACATATCGTGAACATAA CATGGAATAACGTGGTTGTACTTCACTTTAATATATTTCATATGGCTTATCAAATAAAAATTATTGCTGCTACACTTGCA TTCCATTGAAACTTGTGGAAGAAGAGATGTAATGTTGTAGTGGTATTTTTTTAGTAGCTGGTCTTTGTTAACCAACCTTT TATTTTGCCTGCAATATCTTGTAGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCT GTATGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGGTAGCTTTCAACC CCTTTAAAAGAACTAAAGTTTCTTATTGGAGAATTTGAAGAAAATCTTAAACATTTCTCACTTCCCTCTAGAAAGCTCCA AAATAAAAAGGGAAACCCATGATGCAGCCAAGATCTGGTCCCTACTAGTTGTAGGGTGAAGATGTCAAATAATGATATTG CTATTGGCAACAATTTTTAATTTTTTTTTTGTACTTGGCTATTCTACTCATCATTATCATAGTTTGTGACAAACCTGTTT TAATATTCAATTCACAATTCCTGTTATCATCACCAATAATACTCTAGTACTAAAACATGTTAATCTAGTAGTTATTCTGA TTTCAACTATGCTAATCTATTGAATTGTATGCAGCGAGAAAATGCTATTGATAACTTCAGAGCTGGAAAGACATGGGTTT TGATTGCTACTGACGTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATGATTTCCCAGATTCT GCTTCTGCATATATCCACAGAATTGGTAGGTTCCATGATATTAAACTATTATTGTTTTTACATTTGAAAAGAAATATTGA AGGGGATTATAGTTTGTCTAATTCTTTCATGGAGCCTTTTTTGTAAATTATTATTTGCTTAATTTTTTGCTAAGTAGAAA ATTTTGATTTTTCAATAGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACATTTTACACCGAGGAAGACATT CCCTTCCTGCGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTGGTTAATGGAGTTGCAAAAAAA GAAGTGGAGGAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAACCAGATATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0693200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTATGAAGCTCAAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCCTTTGTCACACCCGTGAATTATCTGCTCA AACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAGTTATTGACGAAACAACTTCTACGAAATG CAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCATGGCTATCCGAAGGAAAAAGGTT GATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTATTTGAACCTGACTTGTTCAAGCAGATTGATTC TGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAGTGCCACTTTACCTGATTTTGTTGAAGATAGAG CTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATACAGCTTCTGAAACAATAAAGCAAAAATTG GTGTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTTTTGGT CTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATT CTGATTTGTCTCAAGAAGAGCGAGAAAATGCTATTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCTACTGAC GTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTTCTGCATATAT CCACAGAATTGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACATTTTACACCGAGGAAGACATTCCCTTCC TGCGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTGGTTAATGGAGTTGCAAAAAAAGAAGTGG AGGAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0693200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLMKLKEPSRDCIRAVILCHTRELSAQTYRECKKLAKGKNFRIKLLTKQLLRNADFSKFPCDILISTPLRLRMAIRRKKV DLSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNTASETIKQKL VFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATD VVARGMDFKAVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMASSGCEVPSWLMELQKKKW RRHRPKRDSIST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
1 155 155 1.3E-36 –
ProSiteProfiles
PS51192
1 144 144 19.123
IPR014001
CDD
cd17957
1 147 147 7.56869E-66 –
SMART
SM00487
1 159 159 1.6E-7
IPR014001
Pfam
PF00270
10 131 122 6.0E-18
IPR011545
PANTHER
PTHR24031
12 292 281 5.3E-57 –
PANTHER
PTHR24031:SF683
12 292 281 5.3E-57 –
SUPERFAMILY
SSF52540
13 295 283 4.57E-59
IPR027417
ProSiteProfiles
PS51194
155 316 162 23.5
IPR001650
CDD
cd18787
156 286 131 7.15763E-58 –
Gene3D
G3DSA:3.40.50.300
156 328 173 8.1E-52 –
Pfam
PF00271
173 277 105 1.2E-29
IPR001650
SMART
SM00490
196 277 82 7.3E-33
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0693200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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