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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0709700 |
Transcript ID | LotjaGi1g1v0709700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Actin-depolymerizing factor; TAIR: AT2G31200.1 actin depolymerizing factor 6; Swiss-Prot: sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor; TrEMBL-Plants: tr|I3S1M0|I3S1M0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0709700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127786206..127788275) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGGCTTTTGATCATTGTCACTTATATTTTTCTATTCAAAAAAAGTTGAACTTTTAGCACAAGTTGAATTCTTTACA ACCTTTGGCTTGTGAATGTTGGTGGGGTTGCATTTAATTTTCAAGAGAAAGGTTTAGTTGAAAAGGCTTTTGATAATTTT TAGCAAAAGTTGAATTCTTTACATCCTTTGGCTTGTGAATGTTTGTGGGGGTGCATTTAATTTTTCAAGATAAAGGTTTA GTTGAAAAGGCTTTTGAGTTTTGATGCTGATTTGTTTATGATTATATTATTTTTTAGGCGAATGCTTCATCAGGCATGGG TGTTGCTGATCACAGCAAGAACACCTTCATGGAGTTGAAGCAAAAGAAGGTTCATCGGTATGTGATCTTTAAGGTTGATG AGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTCGCGGCGTCTTTGCCTGAG AATGATTGTAGATATGCTGTGTTTGACTTTGATTTTGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCATTGC ATGGTTAGTTTGTTTGTCCTGCCTTTTATCCCTGTTTAAACCTAGATGATTGTGAGAAGTGACACCTAATATGTGTTATC TTGTGCAACAAAAGAAAATTTAGCTGGACATGTGATTTATGTTCTTTGAACATATCTTGTGTGATTTCAAAATCACCATG CCAACTAATTCTTTAAAGTGTGTTTTTGATTGAGTGATGGTCATAAAAATCAATGCACTTTGTAGCTGCTTGTAGAATTT ATTTTGGATCCTAAATTGGTTTGCAAAAGCTAGACCAAACACACTTTAAGCTTATGTGAATTTGTACTGCTTTAGTGTCA TTCTTTGCATGGTCTTTGCTGGTACTGAAGCTATGCGTTTATTGTTTCATTGAATCAGGAAAAATTTCTTGTTTAGATAC AATTTTCTTACATGATTGGGCTGTAAATGTAGTCAAATGTAGTATCTTTGATATGTTGCTCCATGCACTGCATCTTGAAT TTTACACCATTTCCATCCTGGTTGCTACTGTCAGACATCAAGTTGTTCAGGGGCTCTTTCTGTGTGTAGGATTTAAGTTT CAGATAGAGCATTACTGGCTAGAAGTTCTTAAATATATATATGCAAATCAAAATAATGTGACATAAACATCTATATGCTT CAGCTTAACCCATATAAGAGTAAGTTTCATTCTTTTTTTTTGTTTGGTGGGGAGGTAGTTTGTCTAGTTCTAATTTGCAA ATCTAGAATTGATGTGTAGAGAATTTAGGTGTTCTCAAATGTTTCTATTCCATTCTTATTTATAAATTTGAAAGTTTGAT GAGATAAAGCTTGGAGGGCTTTGCTATTATGTAGTATTTCAGAATGTCTCTTATTATCTTCTGGAGACAGGAGCAGATAA TATAATGTCCTCAATTAGGATGATTGGTTCTTGAAGGAATTGGTACTATGGTACACGATTCCATCAATCCATTGTACAAG TTTACTATATCGGCGTGAATTGCATTTGCATGTCAAGCCTTCACATACCTTGCTTCTGAATAAAATCAGTATAAATATAA GTTTAGGTAAGAAAACTTATTGGTTTTTAATAGTTGGATGGGTTAGGTACTCCTGCATTTTTTGAGCTGATTGTCCATAG AATAGAAAGACTACTCTGATAAATTCATCCGTTTCTTGTTTGAGTGGCATCTTGATTTCCAGTTCCTAACAAATTTTCCT TCATTTCAAGTATCACCTAAATCTCTTACTTGGGTTTGACTACTGCATGTTCTTCTAATGAGAACTAACTTGGGGTGAAC TTTTGTCATTTTACCAGTTTGATATATGATTATGCCTCTGAGATATCATTCTTAGTTTTTCATTGCTGATATTGATTAGG TCTCCTTCAACATCTCGAATCCGAGCCAAGATGCTCTATGCCACTACTAAAGAAAGGTTCAGACGTGAGCTAGATGGTGT TCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGATCAAAGACCGAGCACATTGA
CDS sequence (LotjaGi1g1v0709700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTTGCTGATCACAGCAAGAACACCTTCATGGAGTTGAAGCAAAAGAAGGTTCATCGGTATGTGATCTTTAAGGT TGATGAGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTCGCGGCGTCTTTGC CTGAGAATGATTGTAGATATGCTGTGTTTGACTTTGATTTTGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTC ATTGCATGGTCTCCTTCAACATCTCGAATCCGAGCCAAGATGCTCTATGCCACTACTAAAGAAAGGTTCAGACGTGAGCT AGATGGTGTTCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGATCAAAGACCGAGCACATTGA
Protein sequence (LotjaGi1g1v0709700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRYAVFDFDFVTSENCQKSKIFF IAWSPSTSRIRAKMLYATTKERFRRELDGVHYEIQATDPTEMDLEVIKDRAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 131 | 131 | 4.9E-88 | – | |
ProSiteProfiles | 1 | 132 | 132 | 40.168 | ||
PANTHER | 1 | 131 | 131 | 4.9E-88 | ||
Gene3D | 1 | 132 | 132 | 8.6E-48 | ||
SUPERFAMILY | 2 | 132 | 131 | 3.87E-45 | – | |
CDD | 3 | 131 | 129 | 2.96481E-62 | ||
SMART | 5 | 132 | 128 | 1.0E-58 | ||
Pfam | 8 | 129 | 122 | 1.4E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi1g1v0709700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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