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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029006
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 97 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.416s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0011199.1
n.a. PREDICTED: villin-2-like [Glycine max] gi|356500511|ref|XP_003519075.1| chr0 4354558 4375992 -
2 domain predictions
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Lj0g3v0011199.3
n.a. PREDICTED: villin-2-like isoform 1 [Glycine max] gi|356534770|ref|XP_003535925.1| chr0 4354558 4370176 -
2 domain predictions
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Lj0g3v0082449.1
n.a. Actin depolymerizing factor [Medicago truncatula] gi|357481641|ref|XP_003611106.1| chr0 32383064 32383505 +
2 domain predictions
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Lj0g3v0114229.1
n.a. PREDICTED: villin-3-like [Cicer arietinum] gi|502166332|ref|XP_004513861.1| chr0 50066030 50067660 +
2 domain predictions
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Lj0g3v0114239.1
n.a. PREDICTED: villin-2-like [Solanum lycopersicum] gi|460408618|ref|XP_004249740.1| chr0 50067844 50070428 +
2 domain predictions
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Lj0g3v0165859.1
n.a. PREDICTED: actin-depolymerizing factor 6-like [Glycine max] gi|356518048|ref|XP_003527696.1| chr0 78759194 78762160 +
2 domain predictions
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Lj0g3v0201099.1
n.a. PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max] gi|356540108|ref|XP_003538532.1| chr0 99355188 99361251 +
2 domain predictions
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Lj0g3v0222659.1
n.a. PREDICTED: protein transport protein SEC23-like [Glycine max] gi|356504446|ref|XP_003521007.1| chr0 114604199 114607839 -
2 domain predictions
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Lj0g3v0242929.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135229|ref|XP_004502262.1| chr0 126025894 126033571 -
2 domain predictions
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Lj0g3v0258459.1
n.a. PREDICTED: villin-2-like isoform 1 [Glycine max] gi|356534770|ref|XP_003535925.1| chr0 134176531 134185908 -
2 domain predictions
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Lj0g3v0258459.3
n.a. PREDICTED: villin-2-like isoform 2 [Glycine max] gi|356534772|ref|XP_003535926.1| chr0 134182685 134185908 -
2 domain predictions
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Lj0g3v0266789.1
n.a. PREDICTED: villin-4-like [Glycine max] gi|356530312|ref|XP_003533726.1| chr0 138231880 138240221 +
2 domain predictions
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Lj0g3v0332229.1
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173796045 +
2 domain predictions
 –
Lj0g3v0332229.2
n.a. PREDICTED: protein transport protein SEC23-like isoform X1 [Cicer arietinum] gi|502135095|ref|XP_004502219.1| chr0 173792431 173795808 +
2 domain predictions
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Lj0g3v0338629.1
n.a. PREDICTED: villin-4-like isoform 1 [Glycine max] gi|356556212|ref|XP_003546420.1| chr0 177313012 177316622 -
2 domain predictions
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Lj1g3v3183530.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like [Cicer arietinum] gi|502102464|ref|XP_004492084.1| chr1 36267168 36269313 +
2 domain predictions
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Lj1g3v3193540.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like [Cicer arietinum] gi|502102464|ref|XP_004492084.1| chr1 36271242 36274023 +
2 domain predictions
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Lj1g3v4241150.1
n.a. PREDICTED: villin-2-like isoform X5 [Cicer arietinum] gi|502108740|ref|XP_004493490.1| chr1 50143106 50155417 -
2 domain predictions
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Lj1g3v4483790.1
n.a. PREDICTED: actin-depolymerizing factor-like [Cicer arietinum] gi|502109989|ref|XP_004493773.1| chr1 52658740 52661497 -
2 domain predictions
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Lj1g3v4804040.1
n.a. PREDICTED: protein transport protein Sec24-like At3g07100-like [Cicer arietinum] gi|502113027|ref|XP_004494519.1| chr1 57825127 57833622 -
2 domain predictions
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Lj1g3v4830280.1
n.a. PREDICTED: protein transport protein Sec23A-like [Glycine max] gi|356572844|ref|XP_003554575.1| chr1 58331898 58337418 -
2 domain predictions
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Lj2g3v2017590.1
n.a. PREDICTED: actin-depolymerizing factor 7-like [Glycine max] gi|356539756|ref|XP_003538360.1| chr2 30914679 30915155 -
2 domain predictions
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Lj3g3v3528600.1
n.a. Actin depolymerizing factor 5 [Theobroma cacao] gi|508705807|gb|EOX97703.1| chr3 43179791 43181545 -
2 domain predictions
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Lj4g3v0070930.1
n.a. actin depolymerizing factor 4 [Populus trichocarpa] gi|224098343|ref|XP_002311154.1| chr4 477659 477845 -
2 domain predictions
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Lj4g3v0070940.1
n.a. PREDICTED: actin-depolymerizing factor 2-like [Glycine max] gi|356532954|ref|XP_003535034.1| chr4 477803 478849 -
2 domain predictions
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Lj4g3v2576080.1
n.a. PREDICTED: protein transport protein Sec23A-like [Cicer arietinum] gi|502135226|ref|XP_004502261.1| chr4 34505126 34509491 -
2 domain predictions
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Lj4g3v2641100.1
n.a. Actin depolymerizing factor-like protein [Medicago truncatula] gi|357519237|ref|XP_003629907.1| chr4 35969413 35971551 -
2 domain predictions
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Lj4g3v2728260.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like [Cicer arietinum] gi|502140262|ref|XP_004504136.1| chr4 36653535 36655521 +
2 domain predictions
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Lj5g3v0614390.1
n.a. PREDICTED: actin-depolymerizing factor 2-like [Cicer arietinum] gi|502114657|ref|XP_004495011.1| chr5 7208719 7210558 -
2 domain predictions
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Lj5g3v2013650.1
n.a. PREDICTED: actin-depolymerizing factor 7-like [Cicer arietinum] gi|502119278|ref|XP_004496563.1| chr5 28318855 28320602 +
2 domain predictions
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Lj5g3v2241210.2
n.a. PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] gi|356534416|ref|XP_003535751.1| chr5 32354970 32369267 +
2 domain predictions
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Lj6g3v0574850.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X1 [Cicer arietinum] gi|502135593|ref|XP_004502386.1| chr6 5731146 5735480 -
2 domain predictions
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Lj6g3v0574860.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X2 [Cicer arietinum] gi|502135596|ref|XP_004502387.1| chr6 5731394 5735480 -
2 domain predictions
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LotjaGi1g1v0533600.1
n.a. Dual specificity phosphatase; TAIR: AT3G55270.1 mitogen-activated protein kinase phosphatase 1; Swiss-Prot: sp|Q9C5S1|MKP1_ARATH Protein-tyrosine-phosphatase MKP1; TrEMBL-Plants: tr|A0A0L9U245|A0A0L9U245_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0533600 LjG1.1_chr1 106201455 106207397 +
2 domain predictions
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LotjaGi1g1v0672500.1
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|A0A0S3RXC8|A0A0S3RXC8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123728479 123741720 -
2 domain predictions
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LotjaGi1g1v0672500.2
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|A0A1J7I9H4|A0A1J7I9H4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123728479 123741720 -
2 domain predictions
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LotjaGi1g1v0672500.3
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|A0A1J7I9H4|A0A1J7I9H4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123729385 123737852 -
2 domain predictions
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LotjaGi1g1v0672500.4
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|G7KTI5|G7KTI5_MEDTR Villin; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123729385 123738694 -
2 domain predictions
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LotjaGi1g1v0672500.5
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|A0A0S3RXC8|A0A0S3RXC8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123729385 123738694 -
2 domain predictions
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LotjaGi1g1v0672500.6
n.a. Villin; TAIR: AT2G41740.1 villin 2; Swiss-Prot: sp|O81644|VILI2_ARATH Villin-2; TrEMBL-Plants: tr|A0A0S3RXC8|A0A0S3RXC8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672500 LjG1.1_chr1 123729385 123738694 -
2 domain predictions
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LotjaGi1g1v0709700.1
n.a. Actin-depolymerizing factor; TAIR: AT2G31200.1 actin depolymerizing factor 6; Swiss-Prot: sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor; TrEMBL-Plants: tr|I3S1M0|I3S1M0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0709700 LjG1.1_chr1 127785503 127788889 +
2 domain predictions
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LotjaGi1g1v0709700.2
n.a. Actin-depolymerizing factor; TAIR: AT2G31200.1 actin depolymerizing factor 6; Swiss-Prot: sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor; TrEMBL-Plants: tr|I3S1M0|I3S1M0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0709700 LjG1.1_chr1 127786206 127788275 +
2 domain predictions
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LotjaGi1g1v0750200.1
n.a. Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|I1NBN5|I1NBN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 LjG1.1_chr1 132252161 132261292 -
2 domain predictions
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LotjaGi1g1v0750200.2
n.a. Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|K7N2I3|K7N2I3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 LjG1.1_chr1 132253267 132258219 -
2 domain predictions
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LotjaGi1g1v0750200.3
n.a. Protein transport protein Sec24-like; TAIR: AT3G07100.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|I1NBN5|I1NBN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750200 LjG1.1_chr1 132253267 132260727 -
2 domain predictions
 –
LotjaGi1g1v0754600.3
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|K7MZM9|K7MZM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762835 132772946 -
2 domain predictions
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LotjaGi1g1v0754600.4
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|K7MZM9|K7MZM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132767362 132773696 -
2 domain predictions
 –
LotjaGi1g1v0754600.5
n.a. Protein transport protein SEC23; TAIR: AT4G01810.1 Sec23/Sec24 protein transport family protein; Swiss-Prot: sp|Q0US25|SEC23_PHANO Protein transport protein SEC23; TrEMBL-Plants: tr|A0A151TXC4|A0A151TXC4_CAJCA Protein transport protein Sec23A; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132768470 132772946 -
2 domain predictions
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LotjaGi2g1v0433100.1
n.a. Actin depolymerizing factor, putative; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|I3S6E4|I3S6E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0433100 LjG1.1_chr2 93011684 93014335 -
2 domain predictions
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LotjaGi2g1v0433100.2
n.a. Actin depolymerizing factor, putative; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|I3S6E4|I3S6E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0433100 LjG1.1_chr2 93012439 93012953 -
2 domain predictions
 –