Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0736100 |
Transcript ID | LotjaGi1g1v0736100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|I3SCN8|I3SCN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0736100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131002593..131010015) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGGCCTCATCAAAAACGCGCACGTACTCACAAACGCGTTAATTTACATAGAATTTTCAATGCTTTCCTTATCTATAT ATACTCACCACTCTTTCTTCCTCATCACCATCAAATCAAATCAAACCAAATCCTCTATTGCAATTCACAACTTCTCTACA AATATTTTCTGTTCCATTCATTCATTCATCACTCAACTCAACAGTAAACATGGGCAATGACCAACAGCCGTTGAACGGCG CCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCACCACCGCGGCAGAAGCTGTTTCTGCTGCCTC TTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCCTCGCAGTTCTCATCTTCTATCTCATAGTTCA ACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTCGACTACACCAACAACACACTCCGCTACAACA TGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTACTACGACAAAGTGGAGGCTTTAGCATACTAT GAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCATTCCGGCAGTACAAGAAGAGCAGCAGCCCCAT GAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAGCTTTCAGAATTAAGCAAAGACAAGAGTGCTG GTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCTCGGGGATTTGATATCCGGCGACTACAAGCCT AAGGTCAAATGTGATCTCAAGGTTCCCTTCAGTAACAATGCGACCTCCACTTTCTTTGCGGTTACCAAGTGCGATGTTGA TTTCTGGAACTGAGTATTGGACTTTTCTCCATCTATGCACACTTGGAATTTTCTTCCTTCCTTTACCCATTCTTTTCGAT CGGTTCTGGATTATACATTTGTCATTTTTTTATTCATTCCCTAATAATTATATGATGTAATATATACATTTTCATGCAAT AAATTTTCTTATAAATAGTTCCATACATGTCAAGTTGGAGAGCATACAAATGAGTATCATCAAGTATCCAAATAAATCCA AAGTAGATCATCCAAATTTACACTCATTCTTTGCTCAGTAACCCACGAATTTGCTTCTTTATAAGCATGTTCTACTGAAA TACAATGCATTTCTACCTTGATAAGATCAATAAGATTCAAATTCTTTAAGAGCTCAAGGCCTAATTTCCTTAAAGCAGAC CCATCCTAGCTACCGCTAAAGTGGAGCTAGTCACTCTCAATAACAATTCTCTTAAACTGAATTGTCAGCAAAATAAAAGC GCATTGGAGACCACAGGATATGATTACTATCTTGTCATATCTTATCATGTCCTGACCACCAAACAAACCCTTACACATGA TAGAGAAGATAGGATAAGGGATATGATAGTGTTATCTTGTTGTTACATTGTTGTCTGCATTTTGTCAAAAACAACCTGAT GTCGAAGCAGATGCCTTGACATCTGATTTCGTGAAGCTAGGACATCAGTCCTTTGCTTGGAACGTGATGTGGGCCCTTGA AAATCTTATGAAGATATGTTTTTTAAAGTTACTTGAGGTTCAAGTAGCTGTACCAGAATGGTTTTAATTGTGGGTTGTTA TTTGTTGAAACAATCTCTATTAAAAGATTGGTTTCTATCTTTACGTTTGAATTTGGCAACAATATCTTGAAGATTCAGTT TTGATTTGTTGCTGCAATCTGTTACTTCAGCCCAAGAAAACCCTAGTGCCCAAGCCACTGCTGCTAAAGTTTATAAAAGG ACAAAGAACTAAAGCTTAAAAAATCACCGAAGCTAATAGAGAGAGATCAAGTGTTTTAGGGTTGTTCATTGTTCTTTGTC CTTATTTCTTGTGAACAAACTTTGCTCCCTGATTCTATAAAGCAAAGTTGTGTTCTATGTTCTTTGATTCTACAAACTCT GATTGTTGATTGTTTGTTACCAATCACTGCGGCAGTGATTGAGAGAAAGGGAGAGGAGGGGCTCTCATACTTAGGTTGAG ATACTAAGTAGAAATACACTGTGTAGATTAGGAAGTGAACTATGAACTGTGGTGTTCATGAGTGTCTGTAATTCCTGAAT CTTGAGATAGTGGATTTCCTTTCTTTGGGTGCGAACCCTCCAAACGTAGGTGAAAGTTTTTTACTAAACTGGGTTACCAA TCCTCTGTATTCTTCTTTTTTAATTTGCTGGTTTTGTTACTGTTAGTCAATTGTCGAACCGGTTGTCCCAGCATCGCGTT CGACATCTGTCCTGTGCGAGAACCGTAATTACAGTTATCATATCTTGCTGGCGCAACAAGCAACATATTACAACATGATG GGATTACTGCTATCATATCATGTCTGATTATCCTGTCCACCAAACGAGCCCTAAGATTACAAAACAGATAGTATATATAT ATATATATATATATATATATATATATATATACATACACGCATGTGTGTGTGTGTTTTCTTATTTCTCATTGTTCATGAAG TGAACTTTGGAAAGACCTGGCTTTTACTTGCCTATATATGTGTCAACAAAACTAACTTAATTTCCTTAATTAGCACAAGT ATCCAAGTGTGGGATCATGTATTTAACTCGTTCTGGTTGATACTTACATAGTAACTCCATGTTATGGACTTATGGATAGT ACTTTCCTTGTTGAGAGTGATTAATTTACGGTCCTCTAAATTGTGATTAAATGGAGTAAGTCATCACCATTTTTGCATTA ATAGTTAATGTTAGCGTTAGTCGTAGTCGATGCTAAATAGAGTTAATTTATACTACTGGTGTTAACTTTTAGGAATTTGC ATCGGCATATGTCTCTGCGAGTGATAAAGGTTTTTTCCTTGTTAGTACTACTTTTGAACTAAACCCTTATGATTCAATCA TAGCAAAGCAGATACGGGTTTATCGTCCTCAGGGATTGTGTGAACATTAGTTCCACCAGTTAAACATTGATCTGAGCGGA TACAAAGATGTTTGATAAATTGTTTTTGTGATTTTGAATATAAAAGAAAACAGTAAAAGAAGGTTTACTGAGGTAACAAA GAAGAAAACGTATTTAGATATGTCGTCACCTAATCCTTTGATTGTTTTCAACTCAAACACTTATGTAATGGTTCATTTCA CTTATGATGCCGAGAGCTATCCACCTAACTATCCCTAGCCTAGGTGAATCTATCAGTTGGAATTCCTAGACGTAATCCCT TACCATCTAGAAAACCCAAAAGGAATAATATAACTCAAGTTCTCTCTCAAAGACATTCCCAATGACCAATCTATCCTAGG CTTGCGAATCTCCGTTCTCACCCGGAAACTCCTGTTAGAACTCAGAACCCCACCTGTCACGTGGAAATCCACTATTGCTC TTACCTAAGATATTCTCACCTTAAGACAATTGGTTCAGTGATTGGTTTCTCTCTTGAACCGGACATGCATTTATCTCCCG ATCTCATGCTAGTCCTCGGAAATCTAACGCAAATCACTGATACTTGAAGCACATAAAGCAAAACTTTAACACACAAATTG TGACCTAAGACATAGGTGTTCTACCTTCATTGAACTAAGCATACACTAATTCATATCAACCTTCCGATCTATTTATAAAT TAGTGAACTCTTTTGATTATCAATTGATTGGTTAGAAGCATGAAGCATAGAAAGAAACACCATACATGAAAGATTATCAT TTACATTCATGAAAAGAGTTTACAACAAATCAAAGAATCAAGTTTCAATAATCTAAATACAAAAATAGAAACAACATGTA CAAGGGATAAGGAAGAAGAGATGAAACCCAGAAGAACGACGAAGGATCTACGGCGATGGAAGCTTTCCCAAGCTTTCCAT CGCCTCCGAGAGGTTGTCACGGTCCTTCGGCGGTCGCCGCCACGCTCCGGAGCTTCAATCTTTCAATCCTAGACCCAGGG ACCCTTCCTCCATGAAGCCCAGCCTCCTATGAATGTTTTAGGGAGGAAAAAATGGAAGAGATATGGAAGAGATTTCGTGG TCTGGCCTTTTATAGAATTTCTGGCCGACCTTAGTTGGCTCAAGCCAAGCTAAGTTGGCTCGAGCGAACCTTTCTTCATG CTGAAGTAGTTAAGACCGCCTTCAGTCCGCTCAAGCTAACTCAAGTTAGCTCAAGCGAACTATGCTGAAAATCTACTGTA AAGTGGTGGCTTGAGCCAACTTTTGAGCGAACTCTTTCCTTTGCTTATTTTTCAGCTCTGTTTCCAGTCCGCTCAAGCTA AATTTGAGCCAACTTTCCTCACTTTATTTTCTTGCTCAAGATTCAAGCCTTCTTCAAGTGATCATCTTACTCCTACATCA AAATTAAGACATTAAATATTAAAAGCATAATATTTACATTATTTTTATGCTAAGACTAAATATTTTCTAAGCAAGCTACT TTGGGGATAAAATGATCAACAATGCAAGCATACTAGTCAAATAAGTGCCTATAATGATAATGAAAAACACGTAAAAATTG CACTTATCAGCGAGTTGAGTCAGCTTTGAGTCGGCTAACCCGATGTTAATACATAGCTTTGACCCTTTTAACATTCATGC AACGCCGACATTAAGTCGGCGTTAAAATAGATGTAGAGTTATTTTTGACTTGTTACTGTTAGTTTTATAGGCGTCTGTTT TTTATTAACGCTAATCGACAAGCTTGTTGTGCGAATTTGTGGCTGAGACTGCTATTCGAAAATGCATGCATATTTTGTAA TCAATTTATTATAAGAAATGTAATTATTGATATGGATTCCTCCCTCGCAGTTGGATGGGTTAATGAGAAGCAAAATCACC CTTGAAAGATGCTAAATGAGTTGAACAAAATTGATCATCGATCTAAGAAAGGATCGACATTGGATATATTGAGATGGTCC GCATCATTCGGGAGAAAAATAAATTGGCTGACTACCGGGCCGAGCAAGGGGGGATAGAACCCCCAAGTTATGGACTTATA AATTAATGGAAATCAAGCATAACTCTATAATACACATTTGAGAGGGATGTTCCCAAGTCTGCTCAATCTTTAATAAATTT AGGGCCCGTTTGGTACGTTGTATAGTATAAGGCCTGATAGTATAAGACCAGATTGTATTAGGCCCGATAGGATAAGGTCT GATAAAATTTTAATATTATACAACGTTTGGTCATACACTGTATAATGTGGTAGTGGTGGTATTGGAAGGTGATTGATGTA TAAGCGTTTATACAATACAATGTGAGCATCAAACAATGTATAAGCTCATAATGTATTGAATAAACTTATACTATCACGTC TAATACGGTGTACCAAACGAGTCATTACGCTTTTGTTGTTTAAAAAGAAACACAAAATGACAGCGGCATAATTTGCTATA AATTAGGTTATCTATGTAATTCAAGTGTGTAATTTTTCCTCATTTTAAGTAGCCAATGATGTTCAAGATAAATGATTTTT TATTTTTATAAATAATTCTTTTAGCATTGCTATTAAACACGATTATTGAGCCCACAATACGACATGATCAAATTCATGAC AAATCAAAATTTTAAATAATATAATAAAAAAATATGATGCTAAAAAATGAAACCTGAAAGTATAAAGACATACAAGGTCG TGCCTTGTTTGTCGCGTAGAACAACATTTTCCTAATTCTTTGGTGCACTAACATTAAGTTTTTTTGAAAGAACTAAGATG ATGTTAAGTTACCGATATAAGTAATACACAAAAATTACCCACAAACTCAATATAAATATGTTAAAAGAATGGTAATGAAT TCCTCTTCTTAAAATCGATCTTCAAGTGTATATAAAAAATGAATGCTTATTCCCGTACAGGGGGCGGGCTAGTGGATACA TTAAATTAAAAATGGCGACAAGGCTGACTCCAACAGCCGTATGAATTTTTCTTGTTTCCCTTGTTCGTGGTTGTTTCTGG TTTCTGGTTGTGAGTTGTGGCAGCGTAAAGTAAACTCGTTCGACAATCTACATCAACTTTGCATCGGTCAACACATTGAA GCTAGCTGCATTCATCAATACCCTTATAGTGGCAAGTAATTTAATTTAATTAGGCAAATGTCCAAACGCGCAGACTTAAT TATTCGATCATTCTTAACCGCGTCCTACTCCTATATCCAATTATATATTATATATTAATGGCTGCCTTCAATACTTCTAC TTCTATATATACGAACCACTACCTTCAAACCAAATCAAATCAAGTCCTCTCTATTACAATTCATCACAACTTCTCTTCAT CTCAACCTTCACTAATTTTCTCCGCATCACATCACACTCACATATAATCTTGTGTTCAACTCATTGATCATCAGTAGTGC TCAAGATTTTCAGACATGGCCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCCGCCATTCCGCCGTCAGGGCA ACCACGCCACAGCCACCATCGTGGCAGAAGCTGCTTCTGCTGCCTCTTCGGCGTCTTCTGGAAGATTCTCATAACACTCA TCGTCCTGGTTGGCCTCGTAATTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTATGTCAATGAAGCC AAATTAACCGAATTCAACTACACCAACAACTCCCTCCGCTACAACATGGTGCTCAACTTCACCGCCCGCAACCCCAACAA GAAACTCAATATTTACTACGACAAGGTGGAAGCTTTAGCATTCTACGAGGATTCCAGGTTCGCCAGTGATGATAAAGTCA TCACCCACATGAACTCATTCCGTCAATACAAGAAGAGCAGCAGCCCCATGAGCGCCACTTTCTCAGGCCAGCATGTGATG GTGCTCGACAGTGATCAGCTTTCAGAGTTAAGCAAAGATAAGAGTGCTCATGTTTATGACATTTATGTGAAGCTTCACTT CAGGATCAGGTTCAGGCTCGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGGTCAAATGTGATCTCAAGGTTCCCT TGGATTCTAATGCTACCTTCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGAGTATTGGACTTTTCT TCATTTTGTTTTGTTTTTCTTTGTTTAATTCGTACTTCTAATAATACTTGAATGTGATTCTTTTATTTTATTCTTCATTC TTTGATTGTATGATGTGTGTAGAGCAATAAAACTTCAGATTTTGTATTCTAGTATATTGTCTATTGTTTTAATTTATGGT TCGACTTCAAAACAGATAAAGTCTCTCTCTGTTTTCTTATATATTGCTTAATTCTTCAGTTCTCACGTTACCATCTCCTA AGAGAGAAAAAAGAAGAAGAAAAAAAACTCATCTAATCCTTAGCCAATAGTTCAATTTTCAAT
CDS sequence (LotjaGi1g1v0736100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCA CCACCGCGGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCC TCGCAGTTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTC GACTACACCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTA CTACGACAAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCAT TCCGGCAGTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAG CTTTCAGAATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCT CGGGGATTTGATATCCGGCGACTACAAGCCTAAGGTCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCTTCA CTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGA
Protein sequence (LotjaGi1g1v0736100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNDQQPLNGAYYGPAIPPSGQPRQSHHRGRSCFCCLFGVLWKILITLIVLVGLAVLIFYLIVQPRPFKFYVNEAKLTQF DYTNNTLRYNMALNFTARNPNKKLSIYYDKVEALAYYEDSRFASDDVITHLNSFRQYKKSSSPMSATFSGERVMLLDSDQ LSELSKDKSAGVYDIFVRLNFRIRFRLGDLISGDYKPKVKCDLKVPLDSNATFTFFAVTKCDVDFWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 223 | 223 | 1.9E-112 | – | |
PANTHER | 1 | 223 | 223 | 1.9E-112 | – | |
Phobius | 1 | 33 | 33 | - | – | |
Phobius | 34 | 63 | 30 | - | – | |
TMHMM | 39 | 61 | 23 | - | – | |
Phobius | 64 | 227 | 164 | - | – | |
Pfam | 95 | 201 | 107 | 1.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…