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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0736100 |
| Transcript ID | LotjaGi1g1v0736100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|I3SCN8|I3SCN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0736100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131002593..131010015) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGGCCTCATCAAAAACGCGCACGTACTCACAAACGCGTTAATTTACATAGAATTTTCAATGCTTTCCTTATCTATAT ATACTCACCACTCTTTCTTCCTCATCACCATCAAATCAAATCAAACCAAATCCTCTATTGCAATTCACAACTTCTCTACA AATATTTTCTGTTCCATTCATTCATTCATCACTCAACTCAACAGTAAACATGGGCAATGACCAACAGCCGTTGAACGGCG CCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCACCACCGCGGCAGAAGCTGTTTCTGCTGCCTC TTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCCTCGCAGTTCTCATCTTCTATCTCATAGTTCA ACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTCGACTACACCAACAACACACTCCGCTACAACA TGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTACTACGACAAAGTGGAGGCTTTAGCATACTAT GAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCATTCCGGCAGTACAAGAAGAGCAGCAGCCCCAT GAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAGCTTTCAGAATTAAGCAAAGACAAGAGTGCTG GTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCTCGGGGATTTGATATCCGGCGACTACAAGCCT AAGGTCAAATGTGATCTCAAGGTTCCCTTCAGTAACAATGCGACCTCCACTTTCTTTGCGGTTACCAAGTGCGATGTTGA TTTCTGGAACTGAGTATTGGACTTTTCTCCATCTATGCACACTTGGAATTTTCTTCCTTCCTTTACCCATTCTTTTCGAT CGGTTCTGGATTATACATTTGTCATTTTTTTATTCATTCCCTAATAATTATATGATGTAATATATACATTTTCATGCAAT AAATTTTCTTATAAATAGTTCCATACATGTCAAGTTGGAGAGCATACAAATGAGTATCATCAAGTATCCAAATAAATCCA AAGTAGATCATCCAAATTTACACTCATTCTTTGCTCAGTAACCCACGAATTTGCTTCTTTATAAGCATGTTCTACTGAAA TACAATGCATTTCTACCTTGATAAGATCAATAAGATTCAAATTCTTTAAGAGCTCAAGGCCTAATTTCCTTAAAGCAGAC CCATCCTAGCTACCGCTAAAGTGGAGCTAGTCACTCTCAATAACAATTCTCTTAAACTGAATTGTCAGCAAAATAAAAGC GCATTGGAGACCACAGGATATGATTACTATCTTGTCATATCTTATCATGTCCTGACCACCAAACAAACCCTTACACATGA TAGAGAAGATAGGATAAGGGATATGATAGTGTTATCTTGTTGTTACATTGTTGTCTGCATTTTGTCAAAAACAACCTGAT GTCGAAGCAGATGCCTTGACATCTGATTTCGTGAAGCTAGGACATCAGTCCTTTGCTTGGAACGTGATGTGGGCCCTTGA AAATCTTATGAAGATATGTTTTTTAAAGTTACTTGAGGTTCAAGTAGCTGTACCAGAATGGTTTTAATTGTGGGTTGTTA TTTGTTGAAACAATCTCTATTAAAAGATTGGTTTCTATCTTTACGTTTGAATTTGGCAACAATATCTTGAAGATTCAGTT TTGATTTGTTGCTGCAATCTGTTACTTCAGCCCAAGAAAACCCTAGTGCCCAAGCCACTGCTGCTAAAGTTTATAAAAGG ACAAAGAACTAAAGCTTAAAAAATCACCGAAGCTAATAGAGAGAGATCAAGTGTTTTAGGGTTGTTCATTGTTCTTTGTC CTTATTTCTTGTGAACAAACTTTGCTCCCTGATTCTATAAAGCAAAGTTGTGTTCTATGTTCTTTGATTCTACAAACTCT GATTGTTGATTGTTTGTTACCAATCACTGCGGCAGTGATTGAGAGAAAGGGAGAGGAGGGGCTCTCATACTTAGGTTGAG ATACTAAGTAGAAATACACTGTGTAGATTAGGAAGTGAACTATGAACTGTGGTGTTCATGAGTGTCTGTAATTCCTGAAT CTTGAGATAGTGGATTTCCTTTCTTTGGGTGCGAACCCTCCAAACGTAGGTGAAAGTTTTTTACTAAACTGGGTTACCAA TCCTCTGTATTCTTCTTTTTTAATTTGCTGGTTTTGTTACTGTTAGTCAATTGTCGAACCGGTTGTCCCAGCATCGCGTT CGACATCTGTCCTGTGCGAGAACCGTAATTACAGTTATCATATCTTGCTGGCGCAACAAGCAACATATTACAACATGATG GGATTACTGCTATCATATCATGTCTGATTATCCTGTCCACCAAACGAGCCCTAAGATTACAAAACAGATAGTATATATAT ATATATATATATATATATATATATATATATACATACACGCATGTGTGTGTGTGTTTTCTTATTTCTCATTGTTCATGAAG TGAACTTTGGAAAGACCTGGCTTTTACTTGCCTATATATGTGTCAACAAAACTAACTTAATTTCCTTAATTAGCACAAGT ATCCAAGTGTGGGATCATGTATTTAACTCGTTCTGGTTGATACTTACATAGTAACTCCATGTTATGGACTTATGGATAGT ACTTTCCTTGTTGAGAGTGATTAATTTACGGTCCTCTAAATTGTGATTAAATGGAGTAAGTCATCACCATTTTTGCATTA ATAGTTAATGTTAGCGTTAGTCGTAGTCGATGCTAAATAGAGTTAATTTATACTACTGGTGTTAACTTTTAGGAATTTGC ATCGGCATATGTCTCTGCGAGTGATAAAGGTTTTTTCCTTGTTAGTACTACTTTTGAACTAAACCCTTATGATTCAATCA TAGCAAAGCAGATACGGGTTTATCGTCCTCAGGGATTGTGTGAACATTAGTTCCACCAGTTAAACATTGATCTGAGCGGA TACAAAGATGTTTGATAAATTGTTTTTGTGATTTTGAATATAAAAGAAAACAGTAAAAGAAGGTTTACTGAGGTAACAAA GAAGAAAACGTATTTAGATATGTCGTCACCTAATCCTTTGATTGTTTTCAACTCAAACACTTATGTAATGGTTCATTTCA CTTATGATGCCGAGAGCTATCCACCTAACTATCCCTAGCCTAGGTGAATCTATCAGTTGGAATTCCTAGACGTAATCCCT TACCATCTAGAAAACCCAAAAGGAATAATATAACTCAAGTTCTCTCTCAAAGACATTCCCAATGACCAATCTATCCTAGG CTTGCGAATCTCCGTTCTCACCCGGAAACTCCTGTTAGAACTCAGAACCCCACCTGTCACGTGGAAATCCACTATTGCTC TTACCTAAGATATTCTCACCTTAAGACAATTGGTTCAGTGATTGGTTTCTCTCTTGAACCGGACATGCATTTATCTCCCG ATCTCATGCTAGTCCTCGGAAATCTAACGCAAATCACTGATACTTGAAGCACATAAAGCAAAACTTTAACACACAAATTG TGACCTAAGACATAGGTGTTCTACCTTCATTGAACTAAGCATACACTAATTCATATCAACCTTCCGATCTATTTATAAAT TAGTGAACTCTTTTGATTATCAATTGATTGGTTAGAAGCATGAAGCATAGAAAGAAACACCATACATGAAAGATTATCAT TTACATTCATGAAAAGAGTTTACAACAAATCAAAGAATCAAGTTTCAATAATCTAAATACAAAAATAGAAACAACATGTA CAAGGGATAAGGAAGAAGAGATGAAACCCAGAAGAACGACGAAGGATCTACGGCGATGGAAGCTTTCCCAAGCTTTCCAT CGCCTCCGAGAGGTTGTCACGGTCCTTCGGCGGTCGCCGCCACGCTCCGGAGCTTCAATCTTTCAATCCTAGACCCAGGG ACCCTTCCTCCATGAAGCCCAGCCTCCTATGAATGTTTTAGGGAGGAAAAAATGGAAGAGATATGGAAGAGATTTCGTGG TCTGGCCTTTTATAGAATTTCTGGCCGACCTTAGTTGGCTCAAGCCAAGCTAAGTTGGCTCGAGCGAACCTTTCTTCATG CTGAAGTAGTTAAGACCGCCTTCAGTCCGCTCAAGCTAACTCAAGTTAGCTCAAGCGAACTATGCTGAAAATCTACTGTA AAGTGGTGGCTTGAGCCAACTTTTGAGCGAACTCTTTCCTTTGCTTATTTTTCAGCTCTGTTTCCAGTCCGCTCAAGCTA AATTTGAGCCAACTTTCCTCACTTTATTTTCTTGCTCAAGATTCAAGCCTTCTTCAAGTGATCATCTTACTCCTACATCA AAATTAAGACATTAAATATTAAAAGCATAATATTTACATTATTTTTATGCTAAGACTAAATATTTTCTAAGCAAGCTACT TTGGGGATAAAATGATCAACAATGCAAGCATACTAGTCAAATAAGTGCCTATAATGATAATGAAAAACACGTAAAAATTG CACTTATCAGCGAGTTGAGTCAGCTTTGAGTCGGCTAACCCGATGTTAATACATAGCTTTGACCCTTTTAACATTCATGC AACGCCGACATTAAGTCGGCGTTAAAATAGATGTAGAGTTATTTTTGACTTGTTACTGTTAGTTTTATAGGCGTCTGTTT TTTATTAACGCTAATCGACAAGCTTGTTGTGCGAATTTGTGGCTGAGACTGCTATTCGAAAATGCATGCATATTTTGTAA TCAATTTATTATAAGAAATGTAATTATTGATATGGATTCCTCCCTCGCAGTTGGATGGGTTAATGAGAAGCAAAATCACC CTTGAAAGATGCTAAATGAGTTGAACAAAATTGATCATCGATCTAAGAAAGGATCGACATTGGATATATTGAGATGGTCC GCATCATTCGGGAGAAAAATAAATTGGCTGACTACCGGGCCGAGCAAGGGGGGATAGAACCCCCAAGTTATGGACTTATA AATTAATGGAAATCAAGCATAACTCTATAATACACATTTGAGAGGGATGTTCCCAAGTCTGCTCAATCTTTAATAAATTT AGGGCCCGTTTGGTACGTTGTATAGTATAAGGCCTGATAGTATAAGACCAGATTGTATTAGGCCCGATAGGATAAGGTCT GATAAAATTTTAATATTATACAACGTTTGGTCATACACTGTATAATGTGGTAGTGGTGGTATTGGAAGGTGATTGATGTA TAAGCGTTTATACAATACAATGTGAGCATCAAACAATGTATAAGCTCATAATGTATTGAATAAACTTATACTATCACGTC TAATACGGTGTACCAAACGAGTCATTACGCTTTTGTTGTTTAAAAAGAAACACAAAATGACAGCGGCATAATTTGCTATA AATTAGGTTATCTATGTAATTCAAGTGTGTAATTTTTCCTCATTTTAAGTAGCCAATGATGTTCAAGATAAATGATTTTT TATTTTTATAAATAATTCTTTTAGCATTGCTATTAAACACGATTATTGAGCCCACAATACGACATGATCAAATTCATGAC AAATCAAAATTTTAAATAATATAATAAAAAAATATGATGCTAAAAAATGAAACCTGAAAGTATAAAGACATACAAGGTCG TGCCTTGTTTGTCGCGTAGAACAACATTTTCCTAATTCTTTGGTGCACTAACATTAAGTTTTTTTGAAAGAACTAAGATG ATGTTAAGTTACCGATATAAGTAATACACAAAAATTACCCACAAACTCAATATAAATATGTTAAAAGAATGGTAATGAAT TCCTCTTCTTAAAATCGATCTTCAAGTGTATATAAAAAATGAATGCTTATTCCCGTACAGGGGGCGGGCTAGTGGATACA TTAAATTAAAAATGGCGACAAGGCTGACTCCAACAGCCGTATGAATTTTTCTTGTTTCCCTTGTTCGTGGTTGTTTCTGG TTTCTGGTTGTGAGTTGTGGCAGCGTAAAGTAAACTCGTTCGACAATCTACATCAACTTTGCATCGGTCAACACATTGAA GCTAGCTGCATTCATCAATACCCTTATAGTGGCAAGTAATTTAATTTAATTAGGCAAATGTCCAAACGCGCAGACTTAAT TATTCGATCATTCTTAACCGCGTCCTACTCCTATATCCAATTATATATTATATATTAATGGCTGCCTTCAATACTTCTAC TTCTATATATACGAACCACTACCTTCAAACCAAATCAAATCAAGTCCTCTCTATTACAATTCATCACAACTTCTCTTCAT CTCAACCTTCACTAATTTTCTCCGCATCACATCACACTCACATATAATCTTGTGTTCAACTCATTGATCATCAGTAGTGC TCAAGATTTTCAGACATGGCCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCCGCCATTCCGCCGTCAGGGCA ACCACGCCACAGCCACCATCGTGGCAGAAGCTGCTTCTGCTGCCTCTTCGGCGTCTTCTGGAAGATTCTCATAACACTCA TCGTCCTGGTTGGCCTCGTAATTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTATGTCAATGAAGCC AAATTAACCGAATTCAACTACACCAACAACTCCCTCCGCTACAACATGGTGCTCAACTTCACCGCCCGCAACCCCAACAA GAAACTCAATATTTACTACGACAAGGTGGAAGCTTTAGCATTCTACGAGGATTCCAGGTTCGCCAGTGATGATAAAGTCA TCACCCACATGAACTCATTCCGTCAATACAAGAAGAGCAGCAGCCCCATGAGCGCCACTTTCTCAGGCCAGCATGTGATG GTGCTCGACAGTGATCAGCTTTCAGAGTTAAGCAAAGATAAGAGTGCTCATGTTTATGACATTTATGTGAAGCTTCACTT CAGGATCAGGTTCAGGCTCGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGGTCAAATGTGATCTCAAGGTTCCCT TGGATTCTAATGCTACCTTCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGAGTATTGGACTTTTCT TCATTTTGTTTTGTTTTTCTTTGTTTAATTCGTACTTCTAATAATACTTGAATGTGATTCTTTTATTTTATTCTTCATTC TTTGATTGTATGATGTGTGTAGAGCAATAAAACTTCAGATTTTGTATTCTAGTATATTGTCTATTGTTTTAATTTATGGT TCGACTTCAAAACAGATAAAGTCTCTCTCTGTTTTCTTATATATTGCTTAATTCTTCAGTTCTCACGTTACCATCTCCTA AGAGAGAAAAAAGAAGAAGAAAAAAAACTCATCTAATCCTTAGCCAATAGTTCAATTTTCAAT
CDS sequence (LotjaGi1g1v0736100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCA CCACCGCGGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCC TCGCAGTTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTC GACTACACCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTA CTACGACAAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCAT TCCGGCAGTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAG CTTTCAGAATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCT CGGGGATTTGATATCCGGCGACTACAAGCCTAAGGTCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCTTCA CTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGA
Protein sequence (LotjaGi1g1v0736100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNDQQPLNGAYYGPAIPPSGQPRQSHHRGRSCFCCLFGVLWKILITLIVLVGLAVLIFYLIVQPRPFKFYVNEAKLTQF DYTNNTLRYNMALNFTARNPNKKLSIYYDKVEALAYYEDSRFASDDVITHLNSFRQYKKSSSPMSATFSGERVMLLDSDQ LSELSKDKSAGVYDIFVRLNFRIRFRLGDLISGDYKPKVKCDLKVPLDSNATFTFFAVTKCDVDFWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 1.9E-112 | – | |
| PANTHER | 1 | 223 | 223 | 1.9E-112 | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 34 | 63 | 30 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 64 | 227 | 164 | - | – | |
| Pfam | 95 | 201 | 107 | 1.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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