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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0736100 |
Transcript ID | LotjaGi1g1v0736100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|I3SCN8|I3SCN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0736100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131002695..131010039) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTACTAGTCATCAAAATTGAATTTGGCCTCATCAAAAACGCGCACGTACTCACAAACGCGTTAATTTACATAGAAT TTTCAATGCTTTCCTTATCTATATATACTCACCACTCTTTCTTCCTCATCACCATCAAATCAAATCAAACCAAATCCTCT ATTGCAATTCACAACTTCTCTACAAATATTTTCTGTTCCATTCATTCATTCATCACTCAACTCAACAGTAAACATGGGCA ATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCACCACCGC GGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCCTCGCAGT TCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTCGACTACA CCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTACTACGAC AAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCATTCCGGCA GTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAGCTTTCAG AATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCTCGGGGAT TTGATATCCGGCGACTACAAGCCTAAGGTCAAATGTGATCTCAAGGTTCCCTTCAGTAACAATGCGACCTCCACTTTCTT TGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGAGTATTGGACTTTTCTCCATCTATGCACACTTGGAATTTTCTTC CTTCCTTTACCCATTCTTTTCGATCGGTTCTGGATTATACATTTGTCATTTTTTTATTCATTCCCTAATAATTATATGAT GTAATATATACATTTTCATGCAATAAATTTTCTTATAAATAGTTCCATACATGTCAAGTTGGAGAGCATACAAATGAGTA TCATCAAGTATCCAAATAAATCCAAAGTAGATCATCCAAATTTACACTCATTCTTTGCTCAGTAACCCACGAATTTGCTT CTTTATAAGCATGTTCTACTGAAATACAATGCATTTCTACCTTGATAAGATCAATAAGATTCAAATTCTTTAAGAGCTCA AGGCCTAATTTCCTTAAAGCAGACCCATCCTAGCTACCGCTAAAGTGGAGCTAGTCACTCTCAATAACAATTCTCTTAAA CTGAATTGTCAGCAAAATAAAAGCGCATTGGAGACCACAGGATATGATTACTATCTTGTCATATCTTATCATGTCCTGAC CACCAAACAAACCCTTACACATGATAGAGAAGATAGGATAAGGGATATGATAGTGTTATCTTGTTGTTACATTGTTGTCT GCATTTTGTCAAAAACAACCTGATGTCGAAGCAGATGCCTTGACATCTGATTTCGTGAAGCTAGGACATCAGTCCTTTGC TTGGAACGTGATGTGGGCCCTTGAAAATCTTATGAAGATATGTTTTTTAAAGTTACTTGAGGTTCAAGTAGCTGTACCAG AATGGTTTTAATTGTGGGTTGTTATTTGTTGAAACAATCTCTATTAAAAGATTGGTTTCTATCTTTACGTTTGAATTTGG CAACAATATCTTGAAGATTCAGTTTTGATTTGTTGCTGCAATCTGTTACTTCAGCCCAAGAAAACCCTAGTGCCCAAGCC ACTGCTGCTAAAGTTTATAAAAGGACAAAGAACTAAAGCTTAAAAAATCACCGAAGCTAATAGAGAGAGATCAAGTGTTT TAGGGTTGTTCATTGTTCTTTGTCCTTATTTCTTGTGAACAAACTTTGCTCCCTGATTCTATAAAGCAAAGTTGTGTTCT ATGTTCTTTGATTCTACAAACTCTGATTGTTGATTGTTTGTTACCAATCACTGCGGCAGTGATTGAGAGAAAGGGAGAGG AGGGGCTCTCATACTTAGGTTGAGATACTAAGTAGAAATACACTGTGTAGATTAGGAAGTGAACTATGAACTGTGGTGTT CATGAGTGTCTGTAATTCCTGAATCTTGAGATAGTGGATTTCCTTTCTTTGGGTGCGAACCCTCCAAACGTAGGTGAAAG TTTTTTACTAAACTGGGTTACCAATCCTCTGTATTCTTCTTTTTTAATTTGCTGGTTTTGTTACTGTTAGTCAATTGTCG AACCGGTTGTCCCAGCATCGCGTTCGACATCTGTCCTGTGCGAGAACCGTAATTACAGTTATCATATCTTGCTGGCGCAA CAAGCAACATATTACAACATGATGGGATTACTGCTATCATATCATGTCTGATTATCCTGTCCACCAAACGAGCCCTAAGA TTACAAAACAGATAGTATATATATATATATATATATATATATATATATATATATACATACACGCATGTGTGTGTGTGTTT TCTTATTTCTCATTGTTCATGAAGTGAACTTTGGAAAGACCTGGCTTTTACTTGCCTATATATGTGTCAACAAAACTAAC TTAATTTCCTTAATTAGCACAAGTATCCAAGTGTGGGATCATGTATTTAACTCGTTCTGGTTGATACTTACATAGTAACT CCATGTTATGGACTTATGGATAGTACTTTCCTTGTTGAGAGTGATTAATTTACGGTCCTCTAAATTGTGATTAAATGGAG TAAGTCATCACCATTTTTGCATTAATAGTTAATGTTAGCGTTAGTCGTAGTCGATGCTAAATAGAGTTAATTTATACTAC TGGTGTTAACTTTTAGGAATTTGCATCGGCATATGTCTCTGCGAGTGATAAAGGTTTTTTCCTTGTTAGTACTACTTTTG AACTAAACCCTTATGATTCAATCATAGCAAAGCAGATACGGGTTTATCGTCCTCAGGGATTGTGTGAACATTAGTTCCAC CAGTTAAACATTGATCTGAGCGGATACAAAGATGTTTGATAAATTGTTTTTGTGATTTTGAATATAAAAGAAAACAGTAA AAGAAGGTTTACTGAGGTAACAAAGAAGAAAACGTATTTAGATATGTCGTCACCTAATCCTTTGATTGTTTTCAACTCAA ACACTTATGTAATGGTTCATTTCACTTATGATGCCGAGAGCTATCCACCTAACTATCCCTAGCCTAGGTGAATCTATCAG TTGGAATTCCTAGACGTAATCCCTTACCATCTAGAAAACCCAAAAGGAATAATATAACTCAAGTTCTCTCTCAAAGACAT TCCCAATGACCAATCTATCCTAGGCTTGCGAATCTCCGTTCTCACCCGGAAACTCCTGTTAGAACTCAGAACCCCACCTG TCACGTGGAAATCCACTATTGCTCTTACCTAAGATATTCTCACCTTAAGACAATTGGTTCAGTGATTGGTTTCTCTCTTG AACCGGACATGCATTTATCTCCCGATCTCATGCTAGTCCTCGGAAATCTAACGCAAATCACTGATACTTGAAGCACATAA AGCAAAACTTTAACACACAAATTGTGACCTAAGACATAGGTGTTCTACCTTCATTGAACTAAGCATACACTAATTCATAT CAACCTTCCGATCTATTTATAAATTAGTGAACTCTTTTGATTATCAATTGATTGGTTAGAAGCATGAAGCATAGAAAGAA ACACCATACATGAAAGATTATCATTTACATTCATGAAAAGAGTTTACAACAAATCAAAGAATCAAGTTTCAATAATCTAA ATACAAAAATAGAAACAACATGTACAAGGGATAAGGAAGAAGAGATGAAACCCAGAAGAACGACGAAGGATCTACGGCGA TGGAAGCTTTCCCAAGCTTTCCATCGCCTCCGAGAGGTTGTCACGGTCCTTCGGCGGTCGCCGCCACGCTCCGGAGCTTC AATCTTTCAATCCTAGACCCAGGGACCCTTCCTCCATGAAGCCCAGCCTCCTATGAATGTTTTAGGGAGGAAAAAATGGA AGAGATATGGAAGAGATTTCGTGGTCTGGCCTTTTATAGAATTTCTGGCCGACCTTAGTTGGCTCAAGCCAAGCTAAGTT GGCTCGAGCGAACCTTTCTTCATGCTGAAGTAGTTAAGACCGCCTTCAGTCCGCTCAAGCTAACTCAAGTTAGCTCAAGC GAACTATGCTGAAAATCTACTGTAAAGTGGTGGCTTGAGCCAACTTTTGAGCGAACTCTTTCCTTTGCTTATTTTTCAGC TCTGTTTCCAGTCCGCTCAAGCTAAATTTGAGCCAACTTTCCTCACTTTATTTTCTTGCTCAAGATTCAAGCCTTCTTCA AGTGATCATCTTACTCCTACATCAAAATTAAGACATTAAATATTAAAAGCATAATATTTACATTATTTTTATGCTAAGAC TAAATATTTTCTAAGCAAGCTACTTTGGGGATAAAATGATCAACAATGCAAGCATACTAGTCAAATAAGTGCCTATAATG ATAATGAAAAACACGTAAAAATTGCACTTATCAGCGAGTTGAGTCAGCTTTGAGTCGGCTAACCCGATGTTAATACATAG CTTTGACCCTTTTAACATTCATGCAACGCCGACATTAAGTCGGCGTTAAAATAGATGTAGAGTTATTTTTGACTTGTTAC TGTTAGTTTTATAGGCGTCTGTTTTTTATTAACGCTAATCGACAAGCTTGTTGTGCGAATTTGTGGCTGAGACTGCTATT CGAAAATGCATGCATATTTTGTAATCAATTTATTATAAGAAATGTAATTATTGATATGGATTCCTCCCTCGCAGTTGGAT GGGTTAATGAGAAGCAAAATCACCCTTGAAAGATGCTAAATGAGTTGAACAAAATTGATCATCGATCTAAGAAAGGATCG ACATTGGATATATTGAGATGGTCCGCATCATTCGGGAGAAAAATAAATTGGCTGACTACCGGGCCGAGCAAGGGGGGATA GAACCCCCAAGTTATGGACTTATAAATTAATGGAAATCAAGCATAACTCTATAATACACATTTGAGAGGGATGTTCCCAA GTCTGCTCAATCTTTAATAAATTTAGGGCCCGTTTGGTACGTTGTATAGTATAAGGCCTGATAGTATAAGACCAGATTGT ATTAGGCCCGATAGGATAAGGTCTGATAAAATTTTAATATTATACAACGTTTGGTCATACACTGTATAATGTGGTAGTGG TGGTATTGGAAGGTGATTGATGTATAAGCGTTTATACAATACAATGTGAGCATCAAACAATGTATAAGCTCATAATGTAT TGAATAAACTTATACTATCACGTCTAATACGGTGTACCAAACGAGTCATTACGCTTTTGTTGTTTAAAAAGAAACACAAA ATGACAGCGGCATAATTTGCTATAAATTAGGTTATCTATGTAATTCAAGTGTGTAATTTTTCCTCATTTTAAGTAGCCAA TGATGTTCAAGATAAATGATTTTTTATTTTTATAAATAATTCTTTTAGCATTGCTATTAAACACGATTATTGAGCCCACA ATACGACATGATCAAATTCATGACAAATCAAAATTTTAAATAATATAATAAAAAAATATGATGCTAAAAAATGAAACCTG AAAGTATAAAGACATACAAGGTCGTGCCTTGTTTGTCGCGTAGAACAACATTTTCCTAATTCTTTGGTGCACTAACATTA AGTTTTTTTGAAAGAACTAAGATGATGTTAAGTTACCGATATAAGTAATACACAAAAATTACCCACAAACTCAATATAAA TATGTTAAAAGAATGGTAATGAATTCCTCTTCTTAAAATCGATCTTCAAGTGTATATAAAAAATGAATGCTTATTCCCGT ACAGGGGGCGGGCTAGTGGATACATTAAATTAAAAATGGCGACAAGGCTGACTCCAACAGCCGTATGAATTTTTCTTGTT TCCCTTGTTCGTGGTTGTTTCTGGTTTCTGGTTGTGAGTTGTGGCAGCGTAAAGTAAACTCGTTCGACAATCTACATCAA CTTTGCATCGGTCAACACATTGAAGCTAGCTGCATTCATCAATACCCTTATAGTGGCAAGTAATTTAATTTAATTAGGCA AATGTCCAAACGCGCAGACTTAATTATTCGATCATTCTTAACCGCGTCCTACTCCTATATCCAATTATATATTATATATT AATGGCTGCCTTCAATACTTCTACTTCTATATATACGAACCACTACCTTCAAACCAAATCAAATCAAGTCCTCTCTATTA CAATTCATCACAACTTCTCTTCATCTCAACCTTCACTAATTTTCTCCGCATCACATCACACTCACATATAATCTTGTGTT CAACTCATTGATCATCAGTAGTGCTCAAGATTTTCAGACATGGCCAATGACCAACAGCCGTTGAACGGCGCCTACTACGG CCCCGCCATTCCGCCGTCAGGGCAACCACGCCACAGCCACCATCGTGGCAGAAGCTGCTTCTGCTGCCTCTTCGGCGTCT TCTGGAAGATTCTCATAACACTCATCGTCCTGGTTGGCCTCGTAATTCTCATCTTCTATCTCATAGTTCAACCCCGCCCC TTCAAATTCTATGTCAATGAAGCCAAATTAACCGAATTCAACTACACCAACAACTCCCTCCGCTACAACATGGTGCTCAA CTTCACCGCCCGCAACCCCAACAAGAAACTCAATATTTACTACGACAAGGTGGAAGCTTTAGCATTCTACGAGGATTCCA GGTTCGCCAGTGATGATAAAGTCATCACCCACATGAACTCATTCCGTCAATACAAGAAGAGCAGCAGCCCCATGAGCGCC ACTTTCTCAGGCCAGCATGTGATGGTGCTCGACAGTGATCAGCTTTCAGAGTTAAGCAAAGATAAGAGTGCTCATGTTTA TGACATTTATGTGAAGCTTCACTTCAGGATCAGGTTCAGGCTCGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGG TCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCTTCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTC TGGAACTGAGTATTGGACTTTTCTTCATTTTGTTTTGTTTTTCTTTGTTTAATTCGTACTTCTAATAATACTTGAATGTG ATTCTTTTATTTTATTCTTCATTCTTTGATTGTATGATGTGTGTAGAGCAATAAAACTTCAGATTTTGTATTCTAGTATA TTGTCTATTGTTTTAATTTATGGTTCGACTTCAAAACAGATAAAGTCTCTCTCTGTTTTCTTATA
CDS sequence (LotjaGi1g1v0736100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCA CCACCGCGGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCC TCGCAGTTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTC GACTACACCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTA CTACGACAAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCAT TCCGGCAGTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAG CTTTCAGAATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCT CGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGGTCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCT TCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGA
Protein sequence (LotjaGi1g1v0736100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNDQQPLNGAYYGPAIPPSGQPRQSHHRGRSCFCCLFGVLWKILITLIVLVGLAVLIFYLIVQPRPFKFYVNEAKLTQF DYTNNTLRYNMALNFTARNPNKKLSIYYDKVEALAYYEDSRFASDDVITHLNSFRQYKKSSSPMSATFSGERVMLLDSDQ LSELSKDKSAGVYDIFVRLNFRIRFRLGDFIFNNDLKPKVKCDLKVPLDSNATFTFFAVTKCDVDFWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 224 | 224 | 2.7E-110 | – | |
Phobius | 1 | 33 | 33 | - | – | |
PANTHER | 1 | 224 | 224 | 2.7E-110 | – | |
Phobius | 34 | 63 | 30 | - | – | |
TMHMM | 39 | 61 | 23 | - | – | |
Phobius | 64 | 228 | 165 | - | – | |
Pfam | 95 | 201 | 107 | 1.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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