Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0736100 |
| Transcript ID | LotjaGi1g1v0736100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|I3SCN8|I3SCN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0736100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131002695..131010039) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTACTAGTCATCAAAATTGAATTTGGCCTCATCAAAAACGCGCACGTACTCACAAACGCGTTAATTTACATAGAAT TTTCAATGCTTTCCTTATCTATATATACTCACCACTCTTTCTTCCTCATCACCATCAAATCAAATCAAACCAAATCCTCT ATTGCAATTCACAACTTCTCTACAAATATTTTCTGTTCCATTCATTCATTCATCACTCAACTCAACAGTAAACATGGGCA ATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCACCACCGC GGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCCTCGCAGT TCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTCGACTACA CCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTACTACGAC AAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCATTCCGGCA GTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAGCTTTCAG AATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCTCGGGGAT TTGATATCCGGCGACTACAAGCCTAAGGTCAAATGTGATCTCAAGGTTCCCTTCAGTAACAATGCGACCTCCACTTTCTT TGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGAGTATTGGACTTTTCTCCATCTATGCACACTTGGAATTTTCTTC CTTCCTTTACCCATTCTTTTCGATCGGTTCTGGATTATACATTTGTCATTTTTTTATTCATTCCCTAATAATTATATGAT GTAATATATACATTTTCATGCAATAAATTTTCTTATAAATAGTTCCATACATGTCAAGTTGGAGAGCATACAAATGAGTA TCATCAAGTATCCAAATAAATCCAAAGTAGATCATCCAAATTTACACTCATTCTTTGCTCAGTAACCCACGAATTTGCTT CTTTATAAGCATGTTCTACTGAAATACAATGCATTTCTACCTTGATAAGATCAATAAGATTCAAATTCTTTAAGAGCTCA AGGCCTAATTTCCTTAAAGCAGACCCATCCTAGCTACCGCTAAAGTGGAGCTAGTCACTCTCAATAACAATTCTCTTAAA CTGAATTGTCAGCAAAATAAAAGCGCATTGGAGACCACAGGATATGATTACTATCTTGTCATATCTTATCATGTCCTGAC CACCAAACAAACCCTTACACATGATAGAGAAGATAGGATAAGGGATATGATAGTGTTATCTTGTTGTTACATTGTTGTCT GCATTTTGTCAAAAACAACCTGATGTCGAAGCAGATGCCTTGACATCTGATTTCGTGAAGCTAGGACATCAGTCCTTTGC TTGGAACGTGATGTGGGCCCTTGAAAATCTTATGAAGATATGTTTTTTAAAGTTACTTGAGGTTCAAGTAGCTGTACCAG AATGGTTTTAATTGTGGGTTGTTATTTGTTGAAACAATCTCTATTAAAAGATTGGTTTCTATCTTTACGTTTGAATTTGG CAACAATATCTTGAAGATTCAGTTTTGATTTGTTGCTGCAATCTGTTACTTCAGCCCAAGAAAACCCTAGTGCCCAAGCC ACTGCTGCTAAAGTTTATAAAAGGACAAAGAACTAAAGCTTAAAAAATCACCGAAGCTAATAGAGAGAGATCAAGTGTTT TAGGGTTGTTCATTGTTCTTTGTCCTTATTTCTTGTGAACAAACTTTGCTCCCTGATTCTATAAAGCAAAGTTGTGTTCT ATGTTCTTTGATTCTACAAACTCTGATTGTTGATTGTTTGTTACCAATCACTGCGGCAGTGATTGAGAGAAAGGGAGAGG AGGGGCTCTCATACTTAGGTTGAGATACTAAGTAGAAATACACTGTGTAGATTAGGAAGTGAACTATGAACTGTGGTGTT CATGAGTGTCTGTAATTCCTGAATCTTGAGATAGTGGATTTCCTTTCTTTGGGTGCGAACCCTCCAAACGTAGGTGAAAG TTTTTTACTAAACTGGGTTACCAATCCTCTGTATTCTTCTTTTTTAATTTGCTGGTTTTGTTACTGTTAGTCAATTGTCG AACCGGTTGTCCCAGCATCGCGTTCGACATCTGTCCTGTGCGAGAACCGTAATTACAGTTATCATATCTTGCTGGCGCAA CAAGCAACATATTACAACATGATGGGATTACTGCTATCATATCATGTCTGATTATCCTGTCCACCAAACGAGCCCTAAGA TTACAAAACAGATAGTATATATATATATATATATATATATATATATATATATATACATACACGCATGTGTGTGTGTGTTT TCTTATTTCTCATTGTTCATGAAGTGAACTTTGGAAAGACCTGGCTTTTACTTGCCTATATATGTGTCAACAAAACTAAC TTAATTTCCTTAATTAGCACAAGTATCCAAGTGTGGGATCATGTATTTAACTCGTTCTGGTTGATACTTACATAGTAACT CCATGTTATGGACTTATGGATAGTACTTTCCTTGTTGAGAGTGATTAATTTACGGTCCTCTAAATTGTGATTAAATGGAG TAAGTCATCACCATTTTTGCATTAATAGTTAATGTTAGCGTTAGTCGTAGTCGATGCTAAATAGAGTTAATTTATACTAC TGGTGTTAACTTTTAGGAATTTGCATCGGCATATGTCTCTGCGAGTGATAAAGGTTTTTTCCTTGTTAGTACTACTTTTG AACTAAACCCTTATGATTCAATCATAGCAAAGCAGATACGGGTTTATCGTCCTCAGGGATTGTGTGAACATTAGTTCCAC CAGTTAAACATTGATCTGAGCGGATACAAAGATGTTTGATAAATTGTTTTTGTGATTTTGAATATAAAAGAAAACAGTAA AAGAAGGTTTACTGAGGTAACAAAGAAGAAAACGTATTTAGATATGTCGTCACCTAATCCTTTGATTGTTTTCAACTCAA ACACTTATGTAATGGTTCATTTCACTTATGATGCCGAGAGCTATCCACCTAACTATCCCTAGCCTAGGTGAATCTATCAG TTGGAATTCCTAGACGTAATCCCTTACCATCTAGAAAACCCAAAAGGAATAATATAACTCAAGTTCTCTCTCAAAGACAT TCCCAATGACCAATCTATCCTAGGCTTGCGAATCTCCGTTCTCACCCGGAAACTCCTGTTAGAACTCAGAACCCCACCTG TCACGTGGAAATCCACTATTGCTCTTACCTAAGATATTCTCACCTTAAGACAATTGGTTCAGTGATTGGTTTCTCTCTTG AACCGGACATGCATTTATCTCCCGATCTCATGCTAGTCCTCGGAAATCTAACGCAAATCACTGATACTTGAAGCACATAA AGCAAAACTTTAACACACAAATTGTGACCTAAGACATAGGTGTTCTACCTTCATTGAACTAAGCATACACTAATTCATAT CAACCTTCCGATCTATTTATAAATTAGTGAACTCTTTTGATTATCAATTGATTGGTTAGAAGCATGAAGCATAGAAAGAA ACACCATACATGAAAGATTATCATTTACATTCATGAAAAGAGTTTACAACAAATCAAAGAATCAAGTTTCAATAATCTAA ATACAAAAATAGAAACAACATGTACAAGGGATAAGGAAGAAGAGATGAAACCCAGAAGAACGACGAAGGATCTACGGCGA TGGAAGCTTTCCCAAGCTTTCCATCGCCTCCGAGAGGTTGTCACGGTCCTTCGGCGGTCGCCGCCACGCTCCGGAGCTTC AATCTTTCAATCCTAGACCCAGGGACCCTTCCTCCATGAAGCCCAGCCTCCTATGAATGTTTTAGGGAGGAAAAAATGGA AGAGATATGGAAGAGATTTCGTGGTCTGGCCTTTTATAGAATTTCTGGCCGACCTTAGTTGGCTCAAGCCAAGCTAAGTT GGCTCGAGCGAACCTTTCTTCATGCTGAAGTAGTTAAGACCGCCTTCAGTCCGCTCAAGCTAACTCAAGTTAGCTCAAGC GAACTATGCTGAAAATCTACTGTAAAGTGGTGGCTTGAGCCAACTTTTGAGCGAACTCTTTCCTTTGCTTATTTTTCAGC TCTGTTTCCAGTCCGCTCAAGCTAAATTTGAGCCAACTTTCCTCACTTTATTTTCTTGCTCAAGATTCAAGCCTTCTTCA AGTGATCATCTTACTCCTACATCAAAATTAAGACATTAAATATTAAAAGCATAATATTTACATTATTTTTATGCTAAGAC TAAATATTTTCTAAGCAAGCTACTTTGGGGATAAAATGATCAACAATGCAAGCATACTAGTCAAATAAGTGCCTATAATG ATAATGAAAAACACGTAAAAATTGCACTTATCAGCGAGTTGAGTCAGCTTTGAGTCGGCTAACCCGATGTTAATACATAG CTTTGACCCTTTTAACATTCATGCAACGCCGACATTAAGTCGGCGTTAAAATAGATGTAGAGTTATTTTTGACTTGTTAC TGTTAGTTTTATAGGCGTCTGTTTTTTATTAACGCTAATCGACAAGCTTGTTGTGCGAATTTGTGGCTGAGACTGCTATT CGAAAATGCATGCATATTTTGTAATCAATTTATTATAAGAAATGTAATTATTGATATGGATTCCTCCCTCGCAGTTGGAT GGGTTAATGAGAAGCAAAATCACCCTTGAAAGATGCTAAATGAGTTGAACAAAATTGATCATCGATCTAAGAAAGGATCG ACATTGGATATATTGAGATGGTCCGCATCATTCGGGAGAAAAATAAATTGGCTGACTACCGGGCCGAGCAAGGGGGGATA GAACCCCCAAGTTATGGACTTATAAATTAATGGAAATCAAGCATAACTCTATAATACACATTTGAGAGGGATGTTCCCAA GTCTGCTCAATCTTTAATAAATTTAGGGCCCGTTTGGTACGTTGTATAGTATAAGGCCTGATAGTATAAGACCAGATTGT ATTAGGCCCGATAGGATAAGGTCTGATAAAATTTTAATATTATACAACGTTTGGTCATACACTGTATAATGTGGTAGTGG TGGTATTGGAAGGTGATTGATGTATAAGCGTTTATACAATACAATGTGAGCATCAAACAATGTATAAGCTCATAATGTAT TGAATAAACTTATACTATCACGTCTAATACGGTGTACCAAACGAGTCATTACGCTTTTGTTGTTTAAAAAGAAACACAAA ATGACAGCGGCATAATTTGCTATAAATTAGGTTATCTATGTAATTCAAGTGTGTAATTTTTCCTCATTTTAAGTAGCCAA TGATGTTCAAGATAAATGATTTTTTATTTTTATAAATAATTCTTTTAGCATTGCTATTAAACACGATTATTGAGCCCACA ATACGACATGATCAAATTCATGACAAATCAAAATTTTAAATAATATAATAAAAAAATATGATGCTAAAAAATGAAACCTG AAAGTATAAAGACATACAAGGTCGTGCCTTGTTTGTCGCGTAGAACAACATTTTCCTAATTCTTTGGTGCACTAACATTA AGTTTTTTTGAAAGAACTAAGATGATGTTAAGTTACCGATATAAGTAATACACAAAAATTACCCACAAACTCAATATAAA TATGTTAAAAGAATGGTAATGAATTCCTCTTCTTAAAATCGATCTTCAAGTGTATATAAAAAATGAATGCTTATTCCCGT ACAGGGGGCGGGCTAGTGGATACATTAAATTAAAAATGGCGACAAGGCTGACTCCAACAGCCGTATGAATTTTTCTTGTT TCCCTTGTTCGTGGTTGTTTCTGGTTTCTGGTTGTGAGTTGTGGCAGCGTAAAGTAAACTCGTTCGACAATCTACATCAA CTTTGCATCGGTCAACACATTGAAGCTAGCTGCATTCATCAATACCCTTATAGTGGCAAGTAATTTAATTTAATTAGGCA AATGTCCAAACGCGCAGACTTAATTATTCGATCATTCTTAACCGCGTCCTACTCCTATATCCAATTATATATTATATATT AATGGCTGCCTTCAATACTTCTACTTCTATATATACGAACCACTACCTTCAAACCAAATCAAATCAAGTCCTCTCTATTA CAATTCATCACAACTTCTCTTCATCTCAACCTTCACTAATTTTCTCCGCATCACATCACACTCACATATAATCTTGTGTT CAACTCATTGATCATCAGTAGTGCTCAAGATTTTCAGACATGGCCAATGACCAACAGCCGTTGAACGGCGCCTACTACGG CCCCGCCATTCCGCCGTCAGGGCAACCACGCCACAGCCACCATCGTGGCAGAAGCTGCTTCTGCTGCCTCTTCGGCGTCT TCTGGAAGATTCTCATAACACTCATCGTCCTGGTTGGCCTCGTAATTCTCATCTTCTATCTCATAGTTCAACCCCGCCCC TTCAAATTCTATGTCAATGAAGCCAAATTAACCGAATTCAACTACACCAACAACTCCCTCCGCTACAACATGGTGCTCAA CTTCACCGCCCGCAACCCCAACAAGAAACTCAATATTTACTACGACAAGGTGGAAGCTTTAGCATTCTACGAGGATTCCA GGTTCGCCAGTGATGATAAAGTCATCACCCACATGAACTCATTCCGTCAATACAAGAAGAGCAGCAGCCCCATGAGCGCC ACTTTCTCAGGCCAGCATGTGATGGTGCTCGACAGTGATCAGCTTTCAGAGTTAAGCAAAGATAAGAGTGCTCATGTTTA TGACATTTATGTGAAGCTTCACTTCAGGATCAGGTTCAGGCTCGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGG TCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCTTCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTC TGGAACTGAGTATTGGACTTTTCTTCATTTTGTTTTGTTTTTCTTTGTTTAATTCGTACTTCTAATAATACTTGAATGTG ATTCTTTTATTTTATTCTTCATTCTTTGATTGTATGATGTGTGTAGAGCAATAAAACTTCAGATTTTGTATTCTAGTATA TTGTCTATTGTTTTAATTTATGGTTCGACTTCAAAACAGATAAAGTCTCTCTCTGTTTTCTTATA
CDS sequence (LotjaGi1g1v0736100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATGACCAACAGCCGTTGAACGGCGCCTACTACGGCCCTGCCATTCCGCCGTCAGGGCAACCACGCCAAAGCCA CCACCGCGGCAGAAGCTGTTTCTGCTGCCTCTTCGGCGTCTTATGGAAGATTCTCATAACACTAATCGTCCTTGTTGGCC TCGCAGTTCTCATCTTCTATCTCATAGTTCAACCCCGCCCCTTCAAATTCTACGTCAATGAAGCCAAATTAACTCAATTC GACTACACCAACAACACACTCCGCTACAACATGGCTCTCAACTTCACTGCACGCAACCCCAACAAGAAACTCAGCATCTA CTACGACAAAGTGGAGGCTTTAGCATACTATGAGGATTCCAGGTTCGCCAGTGATGATGTCATCACCCACCTGAACTCAT TCCGGCAGTACAAGAAGAGCAGCAGCCCCATGAGCGCCACATTCTCCGGCGAACGAGTGATGCTACTCGACAGTGATCAG CTTTCAGAATTAAGCAAAGACAAGAGTGCTGGTGTTTATGACATCTTTGTGAGGCTCAACTTCAGGATCAGGTTCAGGCT CGGGGATTTCATATTCAATAACGACCTCAAGCCCAAGGTCAAATGTGATCTCAAGGTTCCCTTGGATTCTAATGCTACCT TCACTTTCTTTGCGGTTACCAAGTGCGATGTTGATTTCTGGAACTGA
Protein sequence (LotjaGi1g1v0736100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNDQQPLNGAYYGPAIPPSGQPRQSHHRGRSCFCCLFGVLWKILITLIVLVGLAVLIFYLIVQPRPFKFYVNEAKLTQF DYTNNTLRYNMALNFTARNPNKKLSIYYDKVEALAYYEDSRFASDDVITHLNSFRQYKKSSSPMSATFSGERVMLLDSDQ LSELSKDKSAGVYDIFVRLNFRIRFRLGDFIFNNDLKPKVKCDLKVPLDSNATFTFFAVTKCDVDFWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 224 | 224 | 2.7E-110 | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 224 | 224 | 2.7E-110 | – | |
| Phobius | 34 | 63 | 30 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 64 | 228 | 165 | - | – | |
| Pfam | 95 | 201 | 107 | 1.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0736100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…