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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0757600 |
Transcript ID | LotjaGi1g1v0757600.2 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|G7ICV1|G7ICV1_MEDTR Pre-mRNA splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi1g1v0757600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133077212..133081998) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGCGAGCTAAATCTTAGTTGTGGAACTTCATCTTCCTCCTTAGGTCTTGGTCGTTTCAGAACTGCAACCCTAGCC TCTCTGATTTGGGCGGGGCATTTTTTCACCTAGCTGGGAAAATTAGGGTTTCGAATTCGATGGGCACCGAGAGAAAGAGG AAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGGCGGCGCCGCCAACAACAGTCT CATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGAGGAAGACCCTCCCCGTTTGGC ACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGTGAGACTGGTAGTGGCAAAACC ACCCAGGTTTGTTCCTTTGGGTTCAGCTTCTGTTAATGATTGATGGGTATTTGGTCTTTAAGTTTATTATCAATTGTATA TGTATTATTTTCAATCTTATGATTGTGGAGGTCATTACTTATTGAAGAGTTTGGTTTCAGTAAGTGTTGTTTAGTTTTGA TGTGTGGTTAGTAAATTGATGGAACTTTAGTTTTGACACAAACCATACATGTCTAAATTTCAAAGTATGTAATGTACCAG AAATAATTTTTGTAGAGATTGGGTTATAGGATTACTTGGAAATTTCAAACATGAATCAGCCATTGTTAATATGAGTCAAG CATGGTTAGAAATGGTACAGTTTTAGTGAGGAAGAGAAACTACTCGGTTCTAGAACAGTTGCTCTGTGTGACTGTGTGTC TGTGTCAGTGTTGTGGGGTGATTGCACATGAATGTTGTAATGGCAAATGCATTCATTATCTTGGTTCCTTGGTTGTATAT CTCTAACTTACTATCATTTGCTTTAAAATAATTTTCTGGGTGACAGATCCCTCAGTTCGTTTTGGATGATGTTGTTTTGG AAAGTCCTGATAAACGTAAGAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGGCGT GTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGAAGACTGTAGTAGTGCGAAGAC AGTTTTGAAGTATGTTAAGTTTTACAATTAAATTACTTTCTATTGTTAATGACTAATTCAGTGCTTGATATGCATTTGTT TTCATGCTTCTCTTTTGGCTCTCTTTTATCGGGTCTCAAGTGAAATACTTTGTCTCGCAGGTATCTCACTGATGGTATGC TCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGATGAGGCTCATGAAAGGACTTTG GCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTCATGAGTGCAAC ACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTGGAAGGCTACACCCTGTTGAAA TTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTACAAATACACACATGTGAACCT CCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAGAAGTTTCTAA TCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAGCTATGCAGCAGAAGATTTTTG AGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCC TTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAGTGCGTGTGGA GTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTGGAAGAACACAACCAGGGAAAT GTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAGATTTTGAGATCCAATCTT GCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTTCATGGACCCTCCTGCCCCTGA GACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGAACTTAACAAAACTGGGTGAAA TTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAATTCAACTGTTCAAACGAGATG CTTTCAATTGCTGCCATGCTTTCAGGTATTATTCTTTTATCTTGTTGCTTTTGTGTCAGTCCAATGTCCTACCACAATAT TAGGGGAATGTAGTTTTATGGGCTCCATTTTGAAATGGATTTCCTGCATATTTACATGCGCAAAGGGATAATCTTGTGTA TATGATGGGGCATGTTTGACTGCTTGCACATGTGCTTAGTGGCACATTATTGTGTCAGTGGAGCATCCTGTTAGGTTGTC ATCAGCAATTGTTTTCTCTGGGTTACATGCCCCCGGTTGGCATGCACCATAGGATTCTAAGCAAGTGCTGATGCTGTTAG TTTCAATTTCTTAGTATTTTCTCATGAAGCAATTGGTGTGGTGTAGACTCTATGCATCTGCTGACCTACCGTGGGCATCC TCTGTGATAATCAATTTCTTTCTTTAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCAGACGAGGCT AAAGCTACGTTTGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTCTACCATGCGTACAAACAAAATAGTAAGTG CTTATTTCTGCTAAATTTTCTTTTAAAAAATAAAAATAAAACAGTGCTGCTGAGATATTTTCTCGGTTTTGGCTGCTTTA AAGTGAGATATACACTTTAGACGATGCAGTGCATAATTATATCTATTAATAGAAACATCAATGGTTGAGATTTTAACAAC AACATAGTTAAAAATTTGCACATATTTTATCACAATTTTAACCATTAATTTATTGATGAGCAATTATATTTTAGAGGAAC CAAATCGTGTTCTCTGATCTTAAGTTTATTAATTGTATCTCAATGTTTTTTTCAGATGAGGATCCCTCTTGGTGCTACGA TAACTTCGTTAATCACAGGGCATTGAAATCTGCTGATAATGTTAGGCAACAACTATTGCGCATCATGGGCCGATTTAACC TGAAGTTATGCAGCACTGACTTTAATAGTCGTGATTACTATGTCAACATAAGAAAGGCTATGCTTTCTGGATATTTCATG CAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTTTATAATGAGCTGTTATTTGTCTT TATGTCATCTTCTTCATCTTTCTTTGTACTAGCAAAAGAGCTAGACTTTCAGCTCTACTATTGTGTTTTGATGGTTTCCA TTGATTCTATTATTCTTGTAGGTGGTGCATTTGCATCCTTCAACTTGCCTGGACCACAAGCCTGAATGGGTTATATATAA TGAATATGTTCTTACCAGTCGAAATTTCATTCGTACTGTGACAGACATACGTGGGGAATGGTAAGATATTTTCTCTCTGA ATTATTGATGTTTCTAGCGTCTAGCTGGTAAAGCGACAAATGCTTGTTATGCTTGATATTAGGTGAAGATGAGACTGTGA ACCTATATGTTAAATGAAAATGATAACTGAGGGATGAGAAACTTTGAATATGATTGTAAAGCACACAAATAGATTTTACT GGGGAGAATAGTGTTACGGTTTTTCTTTGATTTGATATAGCTTTCCTAGTTCTTGCTTTATGATCATCCCAATTTTTCAT CTGAAACAGGTTGGTTGACATAGCACCACATTACTATGATTTGACAAATTTTCCACAATGTGAGGCAAAGCGTGTTCTTG AGAAACTTTACAAGAAGCGAGAGAAGGAAAAGGAGGAAACCAGGAGCCGCAAATGAAAGTCCTAGCCACTGTTTTTGCCA TTGGATTTGGATTGGATGTTTTGGTCTCCTGCTTCTGGGATCATGATTCCATTGCTGGAAGGTTGCATAATGCTACTACC CTTTATCAACTCTTTAGGAATTGCTGATTGTCACGGGTTTAGTGTGTATTTGGCTTACGGTTGAAGTACTTTAAATTTGC TTTTGAAAGTAGGATCTCACTTCTCAAACAAAAAACGGGACTCACATTCTGTTGAACCGAAAAGCAAATAGACCCTTATG GCGAAGTTCCTTGTAACATTTCTAGATTATTAGCAAACATATTAATATATTTTTTTCATCATCCTCTGTTTTGTAATACC ATATTTGTTTCTAGATGTTAGTTCTGTTATATTTATTTATAATTAATTCTTTCATTTTGTTATGTGATTAACATAATCAA TTAATTAGAATATATTTTATTTGATCATTAATATCAATTATGTAAATTATTAATTTAATTTTTTTACATGTATTATGATG GGTTAGGTCCTATAATGGGTTAGGTAAGTTAATTTTGTTTAATGATGGGACCCTGGTATCAACTGGCTATTCCATTAGAC AGTTTATTCTAAAAAAGTATTAATAAATCTTGATAGCAGTTCCTCTCTCTGTTGCCTTTCACTTTCACTTTCTGGCAAAT TAATAGGCAGACTCATGGATTCCTCAACTATGTCAGGTACACACTCTATACGTCATGACAATCAACG
CDS sequence (LotjaGi1g1v0757600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCACCGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTTGACGACGCTGCCGCTAAGTTAGTCAAATCCAATGG CGGCGCCGCCAACAACAGTCTCATCAATCACTGGAATGCAAGACCTTACTCCCAGAGGTACTTTGATATTCTCGAGAAGA GGAAGACCCTCCCCGTTTGGCACCAGAAAGAAGACTTTTTGCTCACTTTGAGGAACAACCAAACTTTGATCCTTGTTGGT GAGACTGGTAGTGGCAAAACCACCCAGATCCCTCAGTTCGTTTTGGATGATGTTGTTTTGGAAAGTCCTGATAAACGTAA GAAGATGATGGTTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGGCGTGTGGCTGAAGAGATGGATG TAACTATTGGGGAAGAGGTTGGTTACAGTATAAGATTTGAAGACTGTAGTAGTGCGAAGACAGTTTTGAAGTATCTCACT GATGGTATGCTCTTGAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTTATTATTCTTGATGAGGCTCATGA AAGGACTTTGGCTACAGATGTGCTATTTGGTCTTCTCAAAGAAGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTCA TGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTAATGAAAGTTCCTGGAAGGCTACAC CCTGTTGAAATTTTCTATACACAAGAACCCGAGAGGGATTACTTGGAGGCTGCTATTAGGACAGTGGTACAAATACACAC ATGTGAACCTCCTGGGGATATACTCGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAG AAGTTTCTAATCTGGGAGACCAGGTGGGCGCTGTGAAAGCGGTACCCCTGTATTCCACTCTTCCTCCAGCTATGCAGCAG AAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGCCCCCCTGGAAGGAAGATTGTGGTATCAACAAACATAGC AGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCTGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAG TGCGTGTGGAGTCTCTATTAGTGTCACCAATATCGAAAGCCAGTGCACACCAGAGATCAGGGCGTGCTGGAAGAACACAA CCAGGGAAATGTTTTAGACTTTATACTGAGAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAGATTTTGAG ATCCAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTGGTGCATTTTGATTTCATGGACCCTC CTGCCCCTGAGACCTTAATGCGTGCATTGGAAGTCTTGAATTATTTGGGCGCACTTGATGACGAAGGGAACTTAACAAAA CTGGGTGAAATTATGAGTGAATTTCCCTTGGATCCACTGATGTCAAAGATGCTCGTAGTTAGTCCTGAATTCAACTGTTC AAACGAGATGCTTTCAATTGCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCAG ACGAGGCTAAAGCTACGTTTGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTCTACCATGCGTACAAACAAAAT AATGAGGATCCCTCTTGGTGCTACGATAACTTCGTTAATCACAGGGCATTGAAATCTGCTGATAATGTTAGGCAACAACT ATTGCGCATCATGGGCCGATTTAACCTGAAGTTATGCAGCACTGACTTTAATAGTCGTGATTACTATGTCAACATAAGAA AGGCTATGCTTTCTGGATATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAG GTGGTGCATTTGCATCCTTCAACTTGCCTGGACCACAAGCCTGAATGGGTTATATATAATGAATATGTTCTTACCAGTCG AAATTTCATTCGTACTGTGACAGACATACGTGGGGAATGGTTGGTTGACATAGCACCACATTACTATGATTTGACAAATT TTCCACAATGTGAGGCAAAGCGTGTTCTTGAGAAACTTTACAAGAAGCGAGAGAAGGAAAAGGAGGAAACCAGGAGCCGC AAATGA
Protein sequence (LotjaGi1g1v0757600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTERKRKVSLFDVVDDAAAKLVKSNGGAANNSLINHWNARPYSQRYFDILEKRKTLPVWHQKEDFLLTLRNNQTLILVG ETGSGKTTQIPQFVLDDVVLESPDKRKKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLT DGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH PVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKISKEVSNLGDQVGAVKAVPLYSTLPPAMQQ KIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ PGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK LGEIMSEFPLDPLMSKMLVVSPEFNCSNEMLSIAAMLSVPNCFVRPREAQKAADEAKATFGHIDGDHLTLLNVYHAYKQN NEDPSWCYDNFVNHRALKSADNVRQQLLRIMGRFNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQ VVHLHPSTCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLYKKREKEKEETRSR K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 721 | 721 | 0.0 | – | |
PANTHER | 1 | 721 | 721 | 0.0 | – | |
Gene3D | 11 | 238 | 228 | 1.2E-88 | – | |
CDD | 45 | 235 | 191 | 3.11947E-127 | – | |
SUPERFAMILY | 53 | 604 | 552 | 4.98E-132 | ||
SMART | 54 | 245 | 192 | 7.2E-32 | ||
Pfam | 62 | 221 | 160 | 9.4E-8 | ||
ProSiteProfiles | 67 | 236 | 170 | 21.543 | ||
Gene3D | 239 | 420 | 182 | 1.6E-72 | – | |
CDD | 240 | 408 | 169 | 7.66778E-85 | – | |
ProSiteProfiles | 261 | 441 | 181 | 16.205 | ||
Pfam | 265 | 399 | 135 | 1.1E-10 | ||
SMART | 282 | 400 | 119 | 1.9E-16 | ||
Gene3D | 444 | 553 | 110 | 1.1E-34 | – | |
SMART | 461 | 551 | 91 | 1.5E-34 | ||
Pfam | 462 | 550 | 89 | 7.8E-24 | ||
Pfam | 612 | 688 | 77 | 1.0E-19 | ||
Coils | 700 | 720 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0757600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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