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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0801100 |
| Transcript ID | LotjaGi1g1v0801100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:137157934..137162520) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATATTTGTTGACGCATTTCAGTTTTTTCGGGAGTAGATTTGCTTCGTTCAAAAAAGTTGAAGATGTGGGGTGTTAC AAGGCTCAAGGTACGATTGGTTGTTATCTCATTCATATTATGTGTGCTTCCATTTCACGTAATCGCTTCTATTCGCAGAC TATCCGCCCTGCTTTCTCTTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGGTTTTGCTGCTTTCTTCCATCCTTTTCT CATCAAACTCACCCCATTCTCTTTTCAAAATTTGGTTCACTCGTTTCCATTTTGTCAGATGACAGTGAGAGAGGCTCTCA ACTCCGCACTTGATGAGGAAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTCATTCAATTGTCCCATTTA TATAACACTGATTTTTTTAACCAAAAAAATGTCTATTTCTTACTTCATTTTTTGGTGTATTAAAGTGCAGGTTGGAGAAT ATCAGGGTGCATACAAGGTTAGTTCTGGGTTTCCAGTTGTTGGTGCTATTTCTTTGCTAGCTGTGAATTTCAAAATTTGA TTTACTATTATCTGTTAATCTGCTTTCGTCTTTCATTGTAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGG GTTCTTGATACTCCAATCACTGAGGTTCTTTTCTTACCTCACCCCAAGCACAATTTTTTTTTTCCCACAAAGAACTTCAT GATATTGTGTTTTCAATTAAAACTGCTAGCATTAGTGTTAGATGTATAGGGTAAACCATTCACATGTCATCCAATAAAGT AAACAAATTGAATTTTTTAATAATGTGGTGGCATGGATATGCATTCCTTGGATATAAGCATAGGCTGTTATGTTAGGCTT CCTTCTTCATGTTGATCTGCTTTTAACTTTCTGCAATGGATTTCTTATTGAATGTGAAAATTAACTTTTCCTGCCTCTTA ACTCAACTTAAATTGATACTTCAATAGTGTTTGATTACATTTTCAACATCGTGTGTGGTGTTTTACATACTTTAAATTTA CACTAATAGATAAACTATTTTAACTGATAATTCCTCGAAAAAAGAACAGGATTTATAGTTGGTAGCTGCGGTTTGCTTGG GGTTATTTATTTGCTTAAATATACTGCAGGCTGGGTTTACTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGACCT GTCGTGGAGTTTATGACATTTAACTTCTCCATGCAGGTTAGAGTTGATCTTGATTGCATTCTTTCTTCCTTAAACTGAAT ATGCAGTTATGTGGTTTAATTTACTTTTTTAACCACTGCTCAAGTAATGTAATGTTATGTCTTGTAAAGTTGGCTGTGCT TGAAGATCATTAGATGGAAATGGCATCTTATCTTATGAGTGCTATCTTCTTTCTGATAAAAACACTAAGGTTATGAAGCT ACCAGCAAATGATTCTTAATTCCACAAGGATAGATGTTGATTCCCTGTCTGTTGATTGACATATACCATGTTTTCTATCA TGGTGTGGTCAACCCCGGAGTTGCTATAATGGCAAACACTATGGGTCACTTTGTTTTAGAGTTAAGTAAAAGTAAATTTG ATAAAAGTAAGTTTAATGAAAGTAAGTGTAATATAATGAAGTTTAAAAAAATGAATTTGTGTTTGGAAATGAAGTATAAA AGTAAGTTTAAAAAAAGGAATGTTGGAACTCATTGGTCCCTTGAACATTGAAATACTAAGATTGTGAAGAATTTTGTGTC AACATGTGTGATGACATTTAGTTTTGGGTTTCATTTGTTTAGTAAACAGCTGCATCATCTTGTCTTATTAACTTCCCCAT CTATTTTATCCCACTTATTGTCTTATTTTATATTAACTTGTTTTGCAGGCAATAGATCACATTATTAATTCTGCTGCAAA ATCAAACTACATGTCTGCTGGGCAAATAAATGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGTG CTCAACACTCTCAGGTATGGTTGTCCAAACTTTCTTCCTATGTGTGAACACTTTCTTGAGCTATTTGTTTGCATTTCCCT TTGAATCTTACTTCAGTTATGACCTATTGTGCACAGATAGTTTAGGTTTTCTCTCTTTGTGTGACTCAACTATGCTTTTA TGCAGTGTTATGCATCTTGGTATGGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTGAAGATGCTCGTGGT TTGCTTAAAGCAGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTGTAAGTTGTGCTGCTTGAATA GTACGTAAAATGAGCAGTAAAAATTTCAAACATAATTTATTTGTTATAAAAAGTATTGTATTTGATGAGCTATGTCTTCT AGATACGGTGAGTCTTTCCCAGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGGTAAT TAATTATCTGTAATATGAAATACGCCGTGCTTATGGTTGTTAGAGTCACACTGGTTATGCATTAATGCTTTCTAATTGTA TCCTTGTTTTTTTTTTTTTTGAAATATATTCTTATTGTATCCTTGTTTGCTTCATGAATTTATCTCTTGACAGATTGAGA GAGAAGGAAAAGATGTTACTATTACAGCCTTTTCAAAAATGGTTGGTTATGCTCTCAAGGTTTGTTTCACCCCAAGTTAC TTCTGTAAACTAGATATTTATTGTTTGCTTTCAATTTATCTTTTGCTGTGACGTATTTGAAATAGATCTAGGTTTGTATT GCATTTAAATTTAAATATTAAACAGTGTTATCAATGGCGTATGGCGGTCCATGGTGTAAAGCCAAAGAAACGCCATAAAA ATATGGCGGACGCGGGACGCCATGGCGGCCTATGGGGGAACTGGGAAGCATGGCAGCCATAGTAAAAATAATATAATATA CATACAAAAGCCTATAAAACAAGCAGAATTAATAATAATAATAATAAACTAGTATTCTCTTCCTTCATACAGTATTAATT TGCACAATAATTGCATACAGCATCATTAGTATTATCTTCTTTGTTTCCACCCTGGGTCAGTTTTGTTATTCCTTGAAGAA GCTTGTGATGAAGCTCTATCAATTGCCATGTTAAGGAGAGAAATAAAAACAGGGTCTAAATCAGGAAGAAAAATGGTAAA GGGTCAAGACAAATAAAACAGAAATAAACGTTGAGGCTCGGTTGAGAGTGCCGGAGATGATCTGCCGGACTTGTCGCTAG AGAGGGAGGGAGCTTGATGGCGAGGATGAGGTGTTGGAGAGGCAGAAAGAAACAGCCTTTGAAGTTGGAATGAGAAAGAA GAAGAATAGAAGCTGGGCTGCTTCTAAAGTTAGGGTTTTGAGTGGTTTGTATGGGCTGGATCATACGACCCATTTGGGAT TATTTTTTATGGGTTTTGGCTCCAAGGACCTAAAAATCTTCAATGGGCTCCATCCACCATGCATATGGCGGCCACCATAG TCCGCCATGCACTTTTCATGGCGGTCCGCTGTAAAACTGCCACGGCATACCGCCACAGCGACACCATGGCCTCCATTTGA CAACACGGATATTAATTAAATAATTAAATAATAAGAGAAGAAACCAAAATAATAATAACAAAACAATAGTAAGAGACATG GGGAAAGTAATTTTTTTGGATGGGTTTGTTATGTGGTGGAGTAATTTATTATTTTGTAAGGACAAATCAGAATTTGTGTC CTCCCAAAGAGAATAGCATTTATTAATGAAACATTTACAAATAACTATTTTTCTTGGTGTTTAGGCTGCTGAGATACTAG CCAAGGAAGGAATCAGTGCCGAGGTAGGCCTTGCAATAGTTAAGGATGAATTTCCCTCCTGTATGCAAAACTTCATTTTA GTATGATAATGGTGAGTGATTTTATCATATAGGTTATCAATTTGCGTTCGATCCGGCCGCTTGATCGATCCACAATCAAT ACTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAGGAGGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGGTT GATCTCTTTACATTGACCTTTTTGTTTCTTTTTTGTTAACTCTTGGAAATTATGTAAAGTTAACTCTTTTCTTGAGCAGC ACATCTGTCATTGAAGAGAGTTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTA TGCAGCAAATCTGGAGAGGATGGCTGTTCCACAGGTAATGCTTCTTTAATATTGCTTTATTTTCTAACCCAATTTGGAAG ACCTGTTATTGTAATCTGCAAATTGATAAAAGAATATCTGTTTTGAATGGGTGTATTAAAGCCCTGAGATGATGGCTTTG TAAGAATTGAGTTTTGTATCTGATGAAAAATCAGATGTCAAGTTGAAGGTTTTAATACATTTTTATACTGTATAGATCAT TTAAATCTGGCTACTTACTCGTATATGTGGATGTACAGGTTGAAGATATTGTTCGTGCTGCAAAAAGAGCATGCTACAGA TCTGTGCCTTTGGCTGCAGCTGCTTGA
CDS sequence (LotjaGi1g1v0801100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGGTGTTACAAGGCTCAAGACTATCCGCCCTGCTTTCTCTTCACTCAGACAATTCTCTTCCGTCGCCAAAGAGAT GACAGTGAGAGAGGCTCTCAACTCCGCACTTGATGAGGAAATGTCAGCAGATCCTAAAGTCTTCTTGATGGGTGAAGAGG TTGGAGAATATCAGGGTGCATACAAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGGGTTCTTGATACTCCA ATCACTGAGTTGGGGTTATTTATTTGCTTAAATATACTGCAGGCTGGGTTTACTGGGATTGGAGTTGGCGCTGCTTACTA TGGTCTAAGACCTGTCGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATTATTAATTCTGCTGCAA AATCAAACTACATGTCTGCTGGGCAAATAAATGTACCTATTGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGGGTTGGT GCTCAACACTCTCAGTGTTATGCATCTTGGTATGGCTCTTGCCCTGGGTTGAAAGTGCTATCACCATACTCATCTGAAGA TGCTCGTGGTTTGCTTAAAGCAGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTGTTATACGGTGAGT CTTTCCCAGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGATTGAGAGAGAAGGAAAA GATGTTACTATTACAGCCTTTTCAAAAATGGTTGGTTATGCTCTCAAGGCTGCTGAGATACTAGCCAAGGAAGGAATCAG TGCCGAGGTTATCAATTTGCGTTCGATCCGGCCGCTTGATCGATCCACAATCAATACTTCTGTCAGGAAAACCAACAGAC TGGTGACAGTTGAGGAGGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGCACATCTGTCATTGAAGAGAGTTTTGGT TATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAGAGGATGGCTGT TCCACAGGTTGAAGATATTGTTCGTGCTGCAAAAAGAGCATGCTACAGATCTGTGCCTTTGGCTGCAGCTGCTTGA
Protein sequence (LotjaGi1g1v0801100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWGVTRLKTIRPAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTP ITELGLFICLNILQAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVG AQHSQCYASWYGSCPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGK DVTITAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRSTINTSVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFG YLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPLAAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 370 | 364 | 1.5E-232 | – | |
| PANTHER | 7 | 370 | 364 | 1.5E-232 | ||
| SUPERFAMILY | 25 | 217 | 193 | 2.36E-61 | ||
| Pfam | 26 | 212 | 187 | 5.8E-40 | ||
| Gene3D | 26 | 229 | 204 | 4.1E-79 | – | |
| SMART | 27 | 213 | 187 | 7.6E-54 | ||
| CDD | 31 | 208 | 178 | 2.24155E-106 | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| SUPERFAMILY | 226 | 360 | 135 | 4.06E-43 | ||
| Gene3D | 230 | 361 | 132 | 4.7E-51 | ||
| Pfam | 231 | 353 | 123 | 3.4E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Pyruvate dehydrogenase (acetyl-transferring) activity | Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. | ||
| Biological process | Acetyl-CoA biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. |
Expression pattern of LotjaGi1g1v0801100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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