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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0025900 |
| Transcript ID | LotjaGi2g1v0025900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310; TrEMBL-Plants: tr|K7K0U5|K7K0U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8754677..8757798) extracted from Lotus japonicus Gifu genome v1.2.
ATCTACTTCTTGTTTTGTTTGGATTTTAAGTGTAAACCAACAAGAATGCTGTAGTTTGTGTATAGCCTTAAATGTGTTTG AGGTCATTTACTAAGAGGAACCAACCTTTCAAAAAAAACTAAGAGGAACCAAATTGGTTCTCTAATTTTCAAATCCTTTG CAGTTAATTCCTGAGATTTTTTTTAATTAAATTAAGGACAAAAGTCTTTTTAGTGCCTATGTATCGTGGGCTTACTCACA TGGTTTTTGCTTTTCCTATGTGTAAATTTTTGTATTACTTTAGATTCCTCTAAAAAATTTAACCATTTTAAATCCCTAAT CTTCAACCTTCTTCCTCATCCTTTTCCCTTCTCCTTCTACTTACACAACTCAAACCTAACAACCTAAAAAATCATCTTTG AAATCCAGAAATTCATCCCCAACCCAATCCCTCACAACCTAGAAAAAAAATCAAAATTCTATGAGCAAAACCCCTCTCCA AAATCTTCATAACCCAAATTTAAAAAAAATGCTCAAATCGAGTTTACCCAGAAACGTAGGTCTTCTTCCCAAAGAGGGAC TCATCCCACTTTGAAAACTTACACGAAAAATTAGAGGAATAATGTGTAAAAGTGAATGTGCCAAAGGATTTGAAGTCCAT GGCTGAATTTGAAAAAAAAAAACTAAAACATAAGTATTTAATAAGCCTTGTGAAGACACGAAAGTTTAAATGTAATTTGA AGAATTGTGGCCATCTTGTTACTATCTATGAATTTGACATTGTCATTGTCTCGAACGCAGCTGCATGTGAGGCAATGGAA ATGGAGGTGGAGACCCTCCTTCTTCTCCTCCTCCTCGCTTCCACACGCTGATGAACAGGCGCAGCAGCTGCTCCGCCGTT GCTCCAATCTGAGCCACCTCCTTCAGACACAAGCCTTCATGCTCACCCGAGCTCTCGACCAAGACCACATCCTCCTCTCG CAATTCATCCACACCTCTGCATCTCTTGGTTTTTCCTCTCACGCTTACTCCATTTTCACCTCCTCCAATCACCGACCACC CAGCATCTTCATCTACAACAACATCATCTGGGCTCTCTCCTCCTCCAACCCCACACGCGCCGTCGCTCTTTTCAACTCCA TTCGCCTTCAAAACTTGCGACCCGACTCTTACTCTTTACCTTTCGCTTTGAAGGCGGTTGTTTCTTTATCTGCCGTCGTC GTCGGTGAGCAGATTCATTGCCAAGCTTTTGTTACCGGGTTGGACTCCCATCCCTCTGTGGCCACATCACTCGTTCACAT GTACTCTTCCTGCAGTAACAATGTTGCTTCTGCTCGGAAGGTGTTTGATGAATTCGTTGGACATGGTTCGGTTTCGCTCT GGAATACCATGCTTGCAGCTTATGCCAAGGTTGGTGATATGTGCAGTGCAAGCAACTTGTTTGAATCTATGCCTCAAACA GATAAGAATGTTGTTTCATGGACTGCACTAATTTCAGGTTGTTAGACTAATGAAAATGCAACTTATCATATTTTGATCAT AATTTAGAGTAGTTAAGGACTTAAGGTGTTTTTTATGTGTGTCTGTGCTCTCACAATTCCAACCCGGATGTGGTGAATGT CAAATGTCTTTCAAGGGTGCGGTTCCTAGGAATCAAACTCTCGTCACTTTTTACCACTGCGACCGGCCGTCATTGGGTAT TAAGGTCTTATTTAGTTATTGTGTAACACAGTTTTTAGTTTTTTAAAATAGAAAAAAGAAATAACTCATTTGATATAAAT ATAAGTAAGTGTTTTGTAAGATTACACCAAGTGATGTTATATCAAATATTAATTGTGTTTATTTTTCTTAGACTAAACCT TATAATTTCATCACAGGTTATGCACAGACTGATAATCCTAATGAGGCCATCATGCTTTTCCACAGAATGCAGCTCCAAAA TGTGCAGCCAGATGAAATTGCAATATTGACTGTGCTCTCTGCCTGTGCTGATTTGGGTGCTCTTCACTTGGGGGAGTGGA TTCACAACTACATCGAAAATGAAAAGCATGAGATACTTAAGAATAGGGTTGTCCCTCTTTATAACTCTCTCATACACATG TATGCCAAATCAGGCAACATAAGTAAAGCACTCCAAGTGTTTGAAAATATGCAGCACAAAACGATTATAACCTGGACAAC GATGATTGCGGGGCTTGCTTTACACGGTCTAGGAAATGAGGCCCTTCGTTTATTTTCTCGCATGGAGAAGGCTCGAGTTA AGCCGAATGAAGTCACCTTCATCGCAGTCCTCTCTGCTTGTAGCCATGTCGGGTTGGTTGAACTGGGACAAGATGTTTTC ACGTCGATGAGGTCGAAATATGGAATTGTGCCTGAGATTGAGCACTATGGCTGCATGGTTGATTTGCTTGGACGTGGTGG CTACCTTGAAGAAGCAAAGGAGCTAGTTAGGGTGATGCCGTTTGAGGCGAATGCAGCTATATGGGGATCCCTTCTTGCTG CCGCAACTAGATGCGGTGATGCTGAGCTTGCAGCGGAAGCTTTGCGTCACCTGATAGTGCTCGAACCCCAGAATTGCGGG AATTATTCACTCTTGTCAAATACGTATGCTGCGCTTGGAAGGTGGAGTGAAGCGCGGATGGTGAGGAAGGTGATGCGGGA TAAAGGTGTGGAAAAGGTTGCAGGTATGAGTTTTATTGAGGTGAACAACATAGTCTATGAATTCATTGCGGGAGACAACA AATTAAACATGTACTTTGTTGAAGTCTTGCATAGCTTAGATGGGCAACTAAGGTTGATTGATTAATGATTTATCTAAAAA GCGTGTACAGGAGGACCTCTATCTGTGTTTGTATTCACCTTGTCGCAAACGGACCTTGAGAGTCTCTTTCATATTTGTGA CATTGGAATGTGAAATCTAAGTTCACATGCTCCAAATGGAGGTTTTGGAAGAAAACCAAACATCCAAGTCTGATGCAAAT TAAACAATGTTATCAAGTCTCGAGCACATACAAATTGTGTAGAGAGAGTTGGCTCAATTATGATGTGAATATTCTCGACT CGAACAAAATTGGCTCTCGTGAATAATAATGTGTTAAACTAAAAAATATATTTTTTAATGAATGTAAAGTAGTTTAACGG TT
CDS sequence (LotjaGi2g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTGACATTGTCATTGTCTCGAACGCAGCTGCATGTGAGGCAATGGAAATGGAGGTGGAGACCCTCCTTCTTCTC CTCCTCCTCGCTTCCACACGCTGATGAACAGGCGCAGCAGCTGCTCCGCCGTTGCTCCAATCTGAGCCACCTCCTTCAGA CACAAGCCTTCATGCTCACCCGAGCTCTCGACCAAGACCACATCCTCCTCTCGCAATTCATCCACACCTCTGCATCTCTT GGTTTTTCCTCTCACGCTTACTCCATTTTCACCTCCTCCAATCACCGACCACCCAGCATCTTCATCTACAACAACATCAT CTGGGCTCTCTCCTCCTCCAACCCCACACGCGCCGTCGCTCTTTTCAACTCCATTCGCCTTCAAAACTTGCGACCCGACT CTTACTCTTTACCTTTCGCTTTGAAGGCGGTTGTTTCTTTATCTGCCGTCGTCGTCGGTGAGCAGATTCATTGCCAAGCT TTTGTTACCGGGTTGGACTCCCATCCCTCTGTGGCCACATCACTCGTTCACATGTACTCTTCCTGCAGTAACAATGTTGC TTCTGCTCGGAAGGTGTTTGATGAATTCGTTGGACATGGTTCGGTTTCGCTCTGGAATACCATGCTTGCAGCTTATGCCA AGGTTGGTGATATGTGCAGTGCAAGCAACTTGTTTGAATCTATGCCTCAAACAGATAAGAATGTTGTTTCATGGACTGCA CTAATTTCAGGTTATGCACAGACTGATAATCCTAATGAGGCCATCATGCTTTTCCACAGAATGCAGCTCCAAAATGTGCA GCCAGATGAAATTGCAATATTGACTGTGCTCTCTGCCTGTGCTGATTTGGGTGCTCTTCACTTGGGGGAGTGGATTCACA ACTACATCGAAAATGAAAAGCATGAGATACTTAAGAATAGGGTTGTCCCTCTTTATAACTCTCTCATACACATGTATGCC AAATCAGGCAACATAAGTAAAGCACTCCAAGTGTTTGAAAATATGCAGCACAAAACGATTATAACCTGGACAACGATGAT TGCGGGGCTTGCTTTACACGGTCTAGGAAATGAGGCCCTTCGTTTATTTTCTCGCATGGAGAAGGCTCGAGTTAAGCCGA ATGAAGTCACCTTCATCGCAGTCCTCTCTGCTTGTAGCCATGTCGGGTTGGTTGAACTGGGACAAGATGTTTTCACGTCG ATGAGGTCGAAATATGGAATTGTGCCTGAGATTGAGCACTATGGCTGCATGGTTGATTTGCTTGGACGTGGTGGCTACCT TGAAGAAGCAAAGGAGCTAGTTAGGGTGATGCCGTTTGAGGCGAATGCAGCTATATGGGGATCCCTTCTTGCTGCCGCAA CTAGATGCGGTGATGCTGAGCTTGCAGCGGAAGCTTTGCGTCACCTGATAGTGCTCGAACCCCAGAATTGCGGGAATTAT TCACTCTTGTCAAATACGTATGCTGCGCTTGGAAGGTGGAGTGAAGCGCGGATGGTGAGGAAGGTGATGCGGGATAAAGG TGTGGAAAAGGTTGCAGGTATGAGTTTTATTGAGGTGAACAACATAGTCTATGAATTCATTGCGGGAGACAACAAATTAA ACATGTACTTTGTTGAAGTCTTGCATAGCTTAGATGGGCAACTAAGGTTGATTGATTAA
Protein sequence (LotjaGi2g1v0025900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLTLSLSRTQLHVRQWKWRWRPSFFSSSSLPHADEQAQQLLRRCSNLSHLLQTQAFMLTRALDQDHILLSQFIHTSASL GFSSHAYSIFTSSNHRPPSIFIYNNIIWALSSSNPTRAVALFNSIRLQNLRPDSYSLPFALKAVVSLSAVVVGEQIHCQA FVTGLDSHPSVATSLVHMYSSCSNNVASARKVFDEFVGHGSVSLWNTMLAAYAKVGDMCSASNLFESMPQTDKNVVSWTA LISGYAQTDNPNEAIMLFHRMQLQNVQPDEIAILTVLSACADLGALHLGEWIHNYIENEKHEILKNRVVPLYNSLIHMYA KSGNISKALQVFENMQHKTIITWTTMIAGLALHGLGNEALRLFSRMEKARVKPNEVTFIAVLSACSHVGLVELGQDVFTS MRSKYGIVPEIEHYGCMVDLLGRGGYLEEAKELVRVMPFEANAAIWGSLLAAATRCGDAELAAEALRHLIVLEPQNCGNY SLLSNTYAALGRWSEARMVRKVMRDKGVEKVAGMSFIEVNNIVYEFIAGDNKLNMYFVEVLHSLDGQLRLID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 85 | 231 | 147 | 9.6E-92 | – | |
| ProSiteProfiles | 99 | 132 | 34 | 5.305 | ||
| Gene3D | 155 | 305 | 151 | 2.5E-25 | ||
| ProSiteProfiles | 168 | 199 | 32 | 5.196 | ||
| ProSiteProfiles | 201 | 231 | 31 | 8.583 | ||
| Pfam | 204 | 229 | 26 | 0.021 | ||
| Pfam | 233 | 281 | 49 | 2.4E-10 | ||
| ProSiteProfiles | 234 | 268 | 35 | 11.509 | ||
| PANTHER | 235 | 290 | 56 | 9.6E-92 | – | |
| TIGRFAM | 236 | 270 | 35 | 7.6E-8 | ||
| ProSiteProfiles | 269 | 303 | 35 | 5.327 | ||
| PANTHER | 286 | 503 | 218 | 9.6E-92 | – | |
| Gene3D | 306 | 520 | 215 | 2.6E-41 | ||
| ProSiteProfiles | 308 | 338 | 31 | 9.646 | ||
| Pfam | 312 | 338 | 27 | 1.8E-6 | ||
| TIGRFAM | 312 | 337 | 26 | 9.0E-7 | ||
| Pfam | 339 | 386 | 48 | 9.0E-11 | ||
| ProSiteProfiles | 339 | 373 | 35 | 11.038 | ||
| TIGRFAM | 341 | 375 | 35 | 4.2E-7 | ||
| ProSiteProfiles | 374 | 409 | 36 | 7.87 | ||
| ProSiteProfiles | 410 | 444 | 35 | 6.906 | ||
| Pfam | 413 | 437 | 25 | 0.071 | ||
| SUPERFAMILY | 439 | 497 | 59 | 1.21E-7 | ||
| ProSiteProfiles | 476 | 510 | 35 | 8.539 | ||
| Pfam | 480 | 508 | 29 | 0.66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0025900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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