Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0059900 |
| Transcript ID | LotjaGi2g1v0059900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT3G02460.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12588969..12596655) extracted from Lotus japonicus Gifu genome v1.2.
CTAATGATCATATTTGACGGGTATATTGAGATTTTGTTCCTTCCCTTTTCCCTTCTCTCGCTTTTGTTTTCTTTTGAGAG CACCTTCCCCAATTTCCAATTTATGAGGTTGTTGCCGTCCTTCTCTTCTCACACTACTCTTTCTCTGTAACGCCCCAATC AATCAACCTACCCATTTCCCATTCACCACCAATACAGGGTTCGTTGATCTGAATGATTGAGAATTCACGTTGGATTCAAT CATCTGAATTTCTCGAATGCTGAAAGCTATTGGAATTGGTTTGGCACGAAATAATGGTATGGTCTCGGAATATTAACATT TTTTTTGTGTTTTGTATTTGAATGTGTATTATTAGCTCTTCTGCAAAGTTTAAAAGTAACTGATCTCTTGCCATTGTTTA TTTTTTTTATTAATGTTGAGGAGACTGAAATTTACTGTTTTGAGCATGCCTTCACTCATTCTTTACTGAATGAATTTGCA TTATCCAGTTTCTTTTATTTCTTGGAAAACACAGTAGCTGAAAGATTACTACTACTTTTTCATTGAATGCGTACTATTTT TGAAATCTTAACCAGGGTCCTGAGGGGACTGTGGTTGCCTTACTTTTATAGGATATGGAATAGGCTGTGTTTGAACAAGT GTTTATGTCCAACTGAACACAACGGAGGGGGAGCCCAGATGGATAACAAACATACTTAGTTGTTGGCACCTTCGTATATA TTAGTTTGTAGATTATGATGAAAAGAAATCGGGTAAGATTCTGATGGTTGCTTTCTTTATGTTGTGATTATGGCACGGCA AAGAGCAAATTGTAATCTCTTATATCTTGTTTGTGTCTTATTGATTATTACATACTTGCCATGTATATTAAATATTTTAG GGTGTGTTTCTGAGTTTTTAGGGAAGGGGAGGGGGAAGAAGGGTAAGCCCTTCCCTTGTTTGGGAGTCCAAAACCCCCAA TTTGGGGGAACTGGAAAATATAATTACGAGAGGGTTTTGGAGGGTTTCTTGAAATACCCCAAACTCTTCGCCCCCCTTCT TAAAAACTCACAAACAAAGGGAGGCTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCAAAAACTCCACTTGCAAATACATG TAACTAGGTGTATGCCAAATTTATTATTTTCTCTTCTCAATGGTATTAGTAAACTAAAATGATAATGACATCATCTTCTT TGCACTTTCTTTTTCAGGTTTTCCTTATTGTAATGCTAAGCTAGTCATCTCCTTTGTCATTTGATCTGAGAGAGCTAATT TGTGGTCTTTGAATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATT TGGGTTTGTAAAACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGGTATTTTG TTTTTTTCCTTTGTTATACTTATATGTGTTTCTCTGGGCTTTAATCATGAACGAGCATTAAAATTTGGCCTGTGGTCTTA CCTTTACTATCATATTTCTTTAATCAGAATTAGGGAGGAGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGCG GGAGTGATTGGAAACATTATCTCAGAAAAAAACCCCATGTTGTTAAAAGGCGTATAAGGAAAGGAATTCCTGATTGTCTA AGGGGCCTTGTTTGGCAGTTGATATCTGGAAGTCGGGACCTATTGCTCATGAATCCTGGAGTTTATGAGGTAATCAAGTC AATTTGTTCAGATGAAAGAATGTGATGTAATATTCTAATAGCTTTGTTCAGTGCTTGCTGCAGTTTATCTTGTTTCAGTT TTCCAACCAATTGATATTGAATCTAAGCTACATTTTTATTCGCGCATATTTTTGTGTCATCACTGTGTATTTCTCTTTGC TGTAACAGTTCACCAATGGTTGATATGCTGGGTTTTCTAAGTTGAACATTGTCTTTCATGGTAACACATAGCTTAAAGGA TATCTTGAATGTGGATATGTACAATATTCAAAATTATCTGATCAATTATCACTCGGCTGCTTGAGTAAATCCTAGTGTGG ATTTATCTTCATAAAAGTATTATTTTGTATCGAAATTGTAGACATAATTTATTCTCATGGTATTCAGCTTCTGTGAAATA TTATTTCCTTAAAGATTAAAATGAAATTGCCCCAACATCCATTGTTGACAAAACATAATGCCTGTTGCATATATTTAATT AATTAATGATTCTACATTCTTCTAATGAATCCCCCTAATTACTATGAAGAATAAAATATTAAAAGCTTTTTAGGTTTCAA GGCATTGAATTCTTTTTTGTTGTTGTTGTTGTTGTTGTTGCTAACTATTTTGAGTAATTAGGATTGGAGGATTTGTTAGG AGGGTATAGCTCTACTCATTTTTTTTTTTATGTTGGGAGCAGATCCTCTCCATCGAATTTACCTCTACCTAAGATAGTGA CTGTTCAATATATTCTCTTTCCATTCTGATTATCTATACAATTAATTATCTTCGATTAACCGATTGAACTACATTGGTGA AAAATAGAGAAGCATTTTTATTAATAGTTGAGTCTTAAATTTGTATTTCAGACTATTACATGTTTTAGCTAGTCTAGAGT CAATGTTAGATGTATTGGATACATTAATTAGGTCTAGAAATATCCAATTTCATAATTTGAAGTCTAATGATTCACAGAAG TTCAAAGTCATTCAAAAGTCTTCCATTAAACCCTTAAGGGTCCCATGAGTTCTAGATACATATTGGTCTGTAAACATAGA TTCTTCATGTATTCTTTTTAGAGTTGAAAGTTCAGCATTTAGATTTCAGTTAAGTATATACAGAATTGCACCCCGCATTA GTCATTGTTGTTTGAGTTTTTTTTTTCAACAAGTAACATAAGTCATTAAACACTCCCAATTTCAAGGAAATATAATTTCT ACATTATCCTCGCACTCAATTAATATTTTCTCATTTGATGTTGTTGGGATGCCAAAAGACAAGGATAAAGTTGGAAAAAA GAAAGTTATTCTTTCTAGGTAGTCTAAAGTTACAACTTACAAATGTTTTGGAACAAACTAAAACCTATGTGACAATTATA TTGAAATACAAAGAGTTATCTCACAGCAATACTTGTGTTGTGGGGATTTCCTGGTCAAAGACCCAAAACTGTTATTAGAA TTAGGGATGCCTAACTCAACCCAAAAGCTAGCTCGAGAGTTGAGGGTTGCTCCAATGTGGGACTTCTAACACACCCCCTC ACGCCCAGGGCTGGACATCTGGAGCGTGGAATGAACATCAACAGGTGGCCCAAATATGAGAGGTCTCCACAACAAATGGA TCTAGGATAGGCTCTGATACCATATTAGAATTTGGGAGGCATATACTCAACCACAAAAGCTTGCTCAAGAGTTGAGGTTT GCACTACCCTTATAAAGGCTATCTATGCTCTATATCTAGCCAATGTGGTACTTCTAACAACTATATATAGTATTGAGTTT CTTTTCACCGTTAGATAAGAAATTGACAGTTTGATTTCTAGCCAAGGAAATTGTTAGAAACCCCCTCAAACAGAATACGA TATTTCGGAACGATGACTGAGCAAACTGAGACAAAGAAGAAAAAGAACACATCTGTTATTGGAGGAAATTGAGAACTGAA GACTCAGCACATCTCACTCACAATGTTCAGTTATATTTTTTCTCAATTTAGAAAAAACATTATAGTTGAGAATAACTTAC CACATATGCCAGGTGTCATGCTTTATGATGAGGGAGTTTGTACTAGAGGAGTATTGAAAAAATTCCCTGCTATTGGTTGT GTAATCACAAACAGAGAACAAAGGAGAGAATCTCCTTCCACTTCCAGTAGTTTCCCCTTTTTGTAAAAGATCTAGTTCTC AATTTCCTGATGATAACAAAATCAGAATCCCTTTTCCGTTGACCCGTTTTACTATTTAAGCTAAACCTCTTCCTTTTCCA ACTATAACTGCCCAGTTAATTTTATAACTACTTTGTAACTAACTATGACTTCATGATTGATAGGTATCCGCATCCCATAG GTTAGTTAGTTAGTTGAGGGGGTTCCTCTTAGTGGAGGGTTAGTTAGTGAGTGAGACTAGAAATACGATAGTTAGAGAGA GTATCATCATCTTTTGGATAATTTGGGATTGAGATTTAGGGAGAGGAGCTAAGACTCTTGGATTTCTCAGCAATGTTGTA GTTTTCTATACTGAATAATATCAGTTTCTGCCTTATTATTGGCTAGGTTCTATCACCAACTTACTTGAGTTCTGTCAGAA GTGAACTCCTCCCACAGGAAACATTTTATCCCACATACTACCCTACCTATTTCCATTTTTTTACAATTTCACTTATCATC CAAACCTAACATATAAGAAATTCCTTGGCCATATTATACAAGGGTGTTTAAAAGGGTTTTTTGCGTTTTGCATGTTTTAA TTTTATATCATAGGAAGATATTATTATTTTGCAAATGACTATTTTTTTGCAAGTTTAGTTACGTTTGTGATGATTACTGG TCCAAGTATGAAATAAAGGTACTAAAACAGGGTACTATCTTTTATATCGAGGTTTCCTTCTTACTTTTTTGAAATTATCT GGAATTTTCTGACACTACTTTTCGACAATTGGGAGTTTGCATTGACAAGACATTTGCCTATTGCAGCAACTAGTCATATA TGAGACATCAGCTTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCCTCACATGTGTTCTTCCAACAGAGAC ATGGACCTGGGCAACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGACAGAGATGTAGGATATGTTCAGGTT TTACTCAGGAACCCATGACCGTTTTTTTTCCGCTTCTCCCAAAGTAATTTATAATATTGATTATTTCAAAATGCAGGGGA TGGGGTTTTTAGCAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGA GCCGTTCATGCCCCAATGGAAGGCTTGTATCTGGTAACAATTTTGTTCCATGAATTCATTTTTGCTGATTATTGATGTTG TCATGTATTAGGTCTGTCTTTTATAATATAAGTTCTAGAAATAATAATCTAAAACGTGTCCTTTACCCAACAACTTAAGC TTTTGGGATAATTGGTTCATGACACGTTCCCTACAAGGAAAGGAAAGAACTGGATATGTATTAAATTTGCATGGTTGTTT CTATTGTATACTTTCTGTTGATACAATTCTCTATTCAGCATGATCACTACTATTTTGAATGTAGGCAGGATTGCCTCTAG TACAGCAATACCTCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATG ATAAATCCTAGCATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAAT TTGGGATGTATTTCTGTATGAGGTTAGTGTGCTTTCCCTTAAAAGAATCATTTGTTTGTTAGAAACATTGATCTATGATT ATGACATTCTTGCCTTCCAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTG GTTGGTATAATGTGACCTTGTGGCTTGTGTTAGTTATGAATTGAATCAAATTTCTACTCATTGTCAGTGTTCTGTTTCTT TATCACAGATTAAACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACG TTATTACCTTTGGCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAA ATACACGTTTTCTTCCTTATCTTGGAATTTGAAATGATTATTGCAGGATTAGGATACACTTAATTTCTTCACTGCTGATC TTCCACGTGTATTTTATTTGTCAAACTCAAAAAGTTACTTCAGTAATGAATGTTACACTATTTGTTACTTTTAAATCTCT TATTCAATGATTTCATTGCTCAGGGGATTTATATTCATAATATATTGATATAAGCTCAAGAGTTGGTCTAGTTCCAAAAA TGGTGCAATTCTAGTACCAGTATATTGGTATTTAGGAGAATATGTTAAAGGACAATATTGATTAGTAGAAAAAACAATTC GTAACTTCTATGCATCTACGTGTAAAGAATTTCCCTTTTTCTGTTTCTTTCTCCCCATGATTTTTTCTCTTCTCACACAT CAACACAAATTTGTCTTCTACTAAAATGGCGCAATTCTATGTTAGAAGGATTTTGGAGACACAAGGGATTGACAACATGA TGTAAGAAAAGAAGGCTAGGGGATTTGGAGGGGCACTAGCATATTTAGAAAATATTACTTTCAAAGTCAAATTCCACCCT GCACCCAGAATGAGATAGAAATAGGAGAGAGAAGTGACATATATGATGTGATAGGAAAATGAGAGAAAAAAAGAGCAGCC GGGTCCGTTAAAGCTCCCACTATGTGCGGAGTCTGATCACGTGATCTATTGTATGCAGCCTTACCTTGGAAAATGAGAGA AAAAAAGAGCAGCCGGGTCCGTTAAAGCTCCCACTATGTGCGGAGTCTGATCACGTGATCTATTGTATGCAGCCTTACCT TGTTTTTTACACAAGAGGCTGTTTCTTGGACTTGAACCTGCCTCAGTCACATGGCAGAGATAGGAAAAGAAAGTGGTTGG AAATGAGATGGAAGAGAAAGTGGCTGTGGATGTATCAAAACTAAAAATATTTATTAGTGAATCAGAAGGGATTTGGCCCT ATAGGTAAAGAATCATGGTGTCTCTTCTTCTGATGTTCAGTTTGTTGGTCCTACAGGTTATAAAAATGCTGGTTTATTTA TTGTGTTTCTTATTATTAGACTAATGCTTAATTAGTTCTTTACCCTGTATTAATCGAATAGTGCATACTGCATCAGCTGT TTATGGCTTGTTTCCACATCCCTTAAAATTCTGTTTATCCTGCACCTAAAAAATAATAATACTAATTTGTTACACACTAC ATAATGGAACTTAAAATAATGCATGCCCAAGTTGTGATTAGACTGTAGAGTAGCTTCTGTGTAAAAGACAATATCTTTTT AAGTTACATAATTATATGGTTATGCACCTGTGTTACTGTTCTTATCAGATATCCAAGCGTTTAGAGGAACTTAAAGAAGA ATATGAGAAGAAGAATGGAAAGATTAGTAGGTCTGGAGAACTTTCTAAGAAGCCCATGCTTTCAAGCCTCCATAGCAACT GAAGCAGGAGTACAAGCTTAAAGGATTCATAGGACCTGCTTGGAACTATGACAATGTCAAAATCACATTCTTAGATTCTG TATTGTGACAATATGTTGTATCTTTTGTACAGTTATATCAGTTATTGACTTCTCATCCAAGTTCTGTGAATTTGAAAATC TATTGTACATCTAAATACTGATATAGGTCTTATACTTCCCTGACTGTATAAAGTCGATTTTTTAAAGAACAAAACGTGAT TTTTGTTATTGTGATAGAGAAAATTGAGATAGCCGGAATTTTTATTATTGTGTGAATTATTTTATTCAAAAATGTTATCA ACATGCC
CDS sequence (LotjaGi2g1v0059900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGAATTAGGGAGGAGAGAAGGG TTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGAAACATTATCTCAGAAAAAAACCCCATGTTGTTAAA AGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTTTGGCAGTTGATATCTGGAAGTCGGGACCTATTGCT CATGAATCCTGGAGTTTATGAGCAACTAGTCATATATGAGACATCAGCTTCTGAGCTAGATATAATTCGAGACATTTCTC GAACATTCCCCTCACATGTGTTCTTCCAACAGAGACATGGACCTGGGCAACGGTCCCTCTACAATGTTTTAAAAGCTTAC TCAGTCTTTGACAGAGATGTAGGATATGTTCAGGGGATGGGGTTTTTAGCAGGTCTTTTACTTCTTTATATGAGTGAGGA GGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCCCCAATGGAAGGCTTGTATCTGGCAGGATTGC CTCTAGTACAGCAATACCTCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAA GAAATGATAAATCCTAGCATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCT TCGAATTTGGGATGTATTTCTGTATGAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACG ATGACTTGATTAAACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACG TTATTACCTTTGGCATATTCGATCAAGATATCCAAGCGTTTAGAGGAACTTAAAGAAGAATATGAGAAGAAGAATGGAAA GATTAGTAGGTCTGGAGAACTTTCTAAGAAGCCCATGCTTTCAAGCCTCCATAGCAACTGA
Protein sequence (LotjaGi2g1v0059900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKRLDDYEPSPVPSPRAVDRFGFVKQDANTSDGLVKSRSAYDHERIREERRVRKWRKMIGVGGSDWKHYLRKKPHVVK RRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAY SVFDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLSQFELLVREHLPKLGEHFSQ EMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLIKLPFEKLIHALKNFPEDAMNPDT LLPLAYSIKISKRLEELKEEYEKKNGKISRSGELSKKPMLSSLHSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 166 | 166 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 14 | 347 | 334 | 1.6E-167 | – | |
| PANTHER | 14 | 347 | 334 | 1.6E-167 | – | |
| Gene3D | 54 | 102 | 49 | 9.4E-9 | – | |
| SUPERFAMILY | 68 | 237 | 170 | 2.88E-45 | ||
| SMART | 83 | 300 | 218 | 4.0E-69 | ||
| ProSiteProfiles | 86 | 277 | 192 | 37.903 | ||
| Pfam | 89 | 296 | 208 | 9.1E-56 | ||
| Gene3D | 108 | 198 | 91 | 2.7E-32 | – | |
| Phobius | 167 | 184 | 18 | - | – | |
| Phobius | 185 | 189 | 5 | - | – | |
| Phobius | 190 | 211 | 22 | - | – | |
| Gene3D | 204 | 347 | 144 | 6.9E-45 | – | |
| Phobius | 212 | 366 | 155 | - | – | |
| SUPERFAMILY | 212 | 332 | 121 | 8.63E-35 | ||
| Coils | 327 | 354 | 28 | - | – | |
| MobiDBLite | 340 | 366 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0059900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…