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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0059900 |
| Transcript ID | LotjaGi2g1v0059900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT5G15930.1 plant adhesion molecule 1; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12590261..12594940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGGTATTTTGTTTTTTTCCTTT GTTATACTTATATGTGTTTCTCTGGGCTTTAATCATGAACGAGCATTAAAATTTGGCCTGTGGTCTTACCTTTACTATCA TATTTCTTTAATCAGAATTAGGGAGGAGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGA AACATTATCTCAGAAAAAAACCCCATGTTGTTAAAAGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTT TGGCAGTTGATATCTGGAAGTCGGGACCTATTGCTCATGAATCCTGGAGTTTATGAGGTAATCAAGTCAATTTGTTCAGA TGAAAGAATGTGATGTAATATTCTAATAGCTTTGTTCAGTGCTTGCTGCAGTTTATCTTGTTTCAGTTTTCCAACCAATT GATATTGAATCTAAGCTACATTTTTATTCGCGCATATTTTTGTGTCATCACTGTGTATTTCTCTTTGCTGTAACAGTTCA CCAATGGTTGATATGCTGGGTTTTCTAAGTTGAACATTGTCTTTCATGGTAACACATAGCTTAAAGGATATCTTGAATGT GGATATGTACAATATTCAAAATTATCTGATCAATTATCACTCGGCTGCTTGAGTAAATCCTAGTGTGGATTTATCTTCAT AAAAGTATTATTTTGTATCGAAATTGTAGACATAATTTATTCTCATGGTATTCAGCTTCTGTGAAATATTATTTCCTTAA AGATTAAAATGAAATTGCCCCAACATCCATTGTTGACAAAACATAATGCCTGTTGCATATATTTAATTAATTAATGATTC TACATTCTTCTAATGAATCCCCCTAATTACTATGAAGAATAAAATATTAAAAGCTTTTTAGGTTTCAAGGCATTGAATTC TTTTTTGTTGTTGTTGTTGTTGTTGTTGCTAACTATTTTGAGTAATTAGGATTGGAGGATTTGTTAGGAGGGTATAGCTC TACTCATTTTTTTTTTTATGTTGGGAGCAGATCCTCTCCATCGAATTTACCTCTACCTAAGATAGTGACTGTTCAATATA TTCTCTTTCCATTCTGATTATCTATACAATTAATTATCTTCGATTAACCGATTGAACTACATTGGTGAAAAATAGAGAAG CATTTTTATTAATAGTTGAGTCTTAAATTTGTATTTCAGACTATTACATGTTTTAGCTAGTCTAGAGTCAATGTTAGATG TATTGGATACATTAATTAGGTCTAGAAATATCCAATTTCATAATTTGAAGTCTAATGATTCACAGAAGTTCAAAGTCATT CAAAAGTCTTCCATTAAACCCTTAAGGGTCCCATGAGTTCTAGATACATATTGGTCTGTAAACATAGATTCTTCATGTAT TCTTTTTAGAGTTGAAAGTTCAGCATTTAGATTTCAGTTAAGTATATACAGAATTGCACCCCGCATTAGTCATTGTTGTT TGAGTTTTTTTTTTCAACAAGTAACATAAGTCATTAAACACTCCCAATTTCAAGGAAATATAATTTCTACATTATCCTCG CACTCAATTAATATTTTCTCATTTGATGTTGTTGGGATGCCAAAAGACAAGGATAAAGTTGGAAAAAAGAAAGTTATTCT TTCTAGGTAGTCTAAAGTTACAACTTACAAATGTTTTGGAACAAACTAAAACCTATGTGACAATTATATTGAAATACAAA GAGTTATCTCACAGCAATACTTGTGTTGTGGGGATTTCCTGGTCAAAGACCCAAAACTGTTATTAGAATTAGGGATGCCT AACTCAACCCAAAAGCTAGCTCGAGAGTTGAGGGTTGCTCCAATGTGGGACTTCTAACACACCCCCTCACGCCCAGGGCT GGACATCTGGAGCGTGGAATGAACATCAACAGGTGGCCCAAATATGAGAGGTCTCCACAACAAATGGATCTAGGATAGGC TCTGATACCATATTAGAATTTGGGAGGCATATACTCAACCACAAAAGCTTGCTCAAGAGTTGAGGTTTGCACTACCCTTA TAAAGGCTATCTATGCTCTATATCTAGCCAATGTGGTACTTCTAACAACTATATATAGTATTGAGTTTCTTTTCACCGTT AGATAAGAAATTGACAGTTTGATTTCTAGCCAAGGAAATTGTTAGAAACCCCCTCAAACAGAATACGATATTTCGGAACG ATGACTGAGCAAACTGAGACAAAGAAGAAAAAGAACACATCTGTTATTGGAGGAAATTGAGAACTGAAGACTCAGCACAT CTCACTCACAATGTTCAGTTATATTTTTTCTCAATTTAGAAAAAACATTATAGTTGAGAATAACTTACCACATATGCCAG GTGTCATGCTTTATGATGAGGGAGTTTGTACTAGAGGAGTATTGAAAAAATTCCCTGCTATTGGTTGTGTAATCACAAAC AGAGAACAAAGGAGAGAATCTCCTTCCACTTCCAGTAGTTTCCCCTTTTTGTAAAAGATCTAGTTCTCAATTTCCTGATG ATAACAAAATCAGAATCCCTTTTCCGTTGACCCGTTTTACTATTTAAGCTAAACCTCTTCCTTTTCCAACTATAACTGCC CAGTTAATTTTATAACTACTTTGTAACTAACTATGACTTCATGATTGATAGGTATCCGCATCCCATAGGTTAGTTAGTTA GTTGAGGGGGTTCCTCTTAGTGGAGGGTTAGTTAGTGAGTGAGACTAGAAATACGATAGTTAGAGAGAGTATCATCATCT TTTGGATAATTTGGGATTGAGATTTAGGGAGAGGAGCTAAGACTCTTGGATTTCTCAGCAATGTTGTAGTTTTCTATACT GAATAATATCAGTTTCTGCCTTATTATTGGCTAGGTTCTATCACCAACTTACTTGAGTTCTGTCAGAAGTGAACTCCTCC CACAGGAAACATTTTATCCCACATACTACCCTACCTATTTCCATTTTTTTACAATTTCACTTATCATCCAAACCTAACAT ATAAGAAATTCCTTGGCCATATTATACAAGGGTGTTTAAAAGGGTTTTTTGCGTTTTGCATGTTTTAATTTTATATCATA GGAAGATATTATTATTTTGCAAATGACTATTTTTTTGCAAGTTTAGTTACGTTTGTGATGATTACTGGTCCAAGTATGAA ATAAAGGTACTAAAACAGGGTACTATCTTTTATATCGAGGTTTCCTTCTTACTTTTTTGAAATTATCTGGAATTTTCTGA CACTACTTTTCGACAATTGGGAGTTTGCATTGACAAGACATTTGCCTATTGCAGCAACTAGTCATATATGAGACATCAGC TTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCCTCACATGTGTTCTTCCAACAGAGACATGGACCTGGGC AACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGACAGAGATGTAGGATATGTTCAGGTTTTACTCAGGAAC CCATGACCGTTTTTTTTCCGCTTCTCCCAAAGTAATTTATAATATTGATTATTTCAAAATGCAGGGGATGGGGTTTTTAG CAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCC CCAATGGAAGGCTTGTATCTGGTAACAATTTTGTTCCATGAATTCATTTTTGCTGATTATTGATGTTGTCATGTATTAGG TCTGTCTTTTATAATATAAGTTCTAGAAATAATAATCTAAAACGTGTCCTTTACCCAACAACTTAAGCTTTTGGGATAAT TGGTTCATGACACGTTCCCTACAAGGAAAGGAAAGAACTGGATATGTATTAAATTTGCATGGTTGTTTCTATTGTATACT TTCTGTTGATACAATTCTCTATTCAGCATGATCACTACTATTTTGAATGTAGGCAGGATTGCCTCTAGTACAGCAATACC TCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATGATAAATCCTAGC ATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAATTTGGGATGTATT TCTGTATGAGGTTAGTGTGCTTTCCCTTAAAAGAATCATTTGTTTGTTAGAAACATTGATCTATGATTATGACATTCTTG CCTTCCAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTGGTTGGTATAATG TGACCTTGTGGCTTGTGTTAGTTATGAATTGAATCAAATTTCTACTCATTGTCAGTGTTCTGTTTCTTTATCACAGATTA AACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACGTTATTACCTTTG GCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAAATACACGTTTTC TTCCTTATCTTGGAATTTGAAATGATTATTGCAGGATTAG
CDS sequence (LotjaGi2g1v0059900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGAATTAGGGAGGAGAGAAGGG TTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGAAACATTATCTCAGAAAAAAACCCCATGTTGTTAAA AGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTTTGGCAGTTGATATCTGGAAGTCGGGACCTATTGCT CATGAATCCTGGAGTTTATGAGCAACTAGTCATATATGAGACATCAGCTTCTGAGCTAGATATAATTCGAGACATTTCTC GAACATTCCCCTCACATGTGTTCTTCCAACAGAGACATGGACCTGGGCAACGGTCCCTCTACAATGTTTTAAAAGCTTAC TCAGTCTTTGACAGAGATGTAGGATATGTTCAGGGGATGGGGTTTTTAGCAGGTCTTTTACTTCTTTATATGAGTGAGGA GGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCCCCAATGGAAGGCTTGTATCTGGCAGGATTGC CTCTAGTACAGCAATACCTCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAA GAAATGATAAATCCTAGCATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCT TCGAATTTGGGATGTATTTCTGTATGAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACG ATGACTTGATTAAACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACG TTATTACCTTTGGCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAA ATACACGTTTTCTTCCTTATCTTGGAATTTGAAATGA
Protein sequence (LotjaGi2g1v0059900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKRLDDYEPSPVPSPRAVDRFGFVKQDANTSDGLVKSRSAYDHERIREERRVRKWRKMIGVGGSDWKHYLRKKPHVVK RRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAY SVFDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLSQFELLVREHLPKLGEHFSQ EMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLIKLPFEKLIHALKNFPEDAMNPDT LLPLAYSIKVLILSLHFDLFSLVQTQKYTFSSLSWNLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 166 | 166 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 14 | 330 | 317 | 4.1E-159 | – | |
| PANTHER | 14 | 330 | 317 | 4.1E-159 | – | |
| Gene3D | 54 | 102 | 49 | 9.1E-9 | – | |
| SUPERFAMILY | 68 | 237 | 170 | 2.62E-45 | ||
| SMART | 83 | 300 | 218 | 4.0E-69 | ||
| ProSiteProfiles | 86 | 277 | 192 | 37.903 | ||
| Pfam | 89 | 296 | 208 | 8.5E-56 | ||
| Gene3D | 108 | 198 | 91 | 2.6E-32 | – | |
| Phobius | 167 | 184 | 18 | - | – | |
| Phobius | 185 | 189 | 5 | - | – | |
| Phobius | 190 | 211 | 22 | - | – | |
| Gene3D | 205 | 341 | 137 | 9.8E-42 | – | |
| SUPERFAMILY | 212 | 329 | 118 | 4.71E-34 | ||
| Phobius | 212 | 251 | 40 | - | – | |
| Phobius | 252 | 270 | 19 | - | – | |
| Phobius | 271 | 323 | 53 | - | – | |
| Phobius | 324 | 343 | 20 | - | – | |
| Phobius | 344 | 358 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0059900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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