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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0059900 |
Transcript ID | LotjaGi2g1v0059900.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TBC1 domain family member; TAIR: AT5G15930.1 plant adhesion molecule 1; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12590261..12594940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGGTATTTTGTTTTTTTCCTTT GTTATACTTATATGTGTTTCTCTGGGCTTTAATCATGAACGAGCATTAAAATTTGGCCTGTGGTCTTACCTTTACTATCA TATTTCTTTAATCAGAATTAGGGAGGAGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGA AACATTATCTCAGAAAAAAACCCCATGTTGTTAAAAGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTT TGGCAGTTGATATCTGGAAGTCGGGACCTATTGCTCATGAATCCTGGAGTTTATGAGGTAATCAAGTCAATTTGTTCAGA TGAAAGAATGTGATGTAATATTCTAATAGCTTTGTTCAGTGCTTGCTGCAGTTTATCTTGTTTCAGTTTTCCAACCAATT GATATTGAATCTAAGCTACATTTTTATTCGCGCATATTTTTGTGTCATCACTGTGTATTTCTCTTTGCTGTAACAGTTCA CCAATGGTTGATATGCTGGGTTTTCTAAGTTGAACATTGTCTTTCATGGTAACACATAGCTTAAAGGATATCTTGAATGT GGATATGTACAATATTCAAAATTATCTGATCAATTATCACTCGGCTGCTTGAGTAAATCCTAGTGTGGATTTATCTTCAT AAAAGTATTATTTTGTATCGAAATTGTAGACATAATTTATTCTCATGGTATTCAGCTTCTGTGAAATATTATTTCCTTAA AGATTAAAATGAAATTGCCCCAACATCCATTGTTGACAAAACATAATGCCTGTTGCATATATTTAATTAATTAATGATTC TACATTCTTCTAATGAATCCCCCTAATTACTATGAAGAATAAAATATTAAAAGCTTTTTAGGTTTCAAGGCATTGAATTC TTTTTTGTTGTTGTTGTTGTTGTTGTTGCTAACTATTTTGAGTAATTAGGATTGGAGGATTTGTTAGGAGGGTATAGCTC TACTCATTTTTTTTTTTATGTTGGGAGCAGATCCTCTCCATCGAATTTACCTCTACCTAAGATAGTGACTGTTCAATATA TTCTCTTTCCATTCTGATTATCTATACAATTAATTATCTTCGATTAACCGATTGAACTACATTGGTGAAAAATAGAGAAG CATTTTTATTAATAGTTGAGTCTTAAATTTGTATTTCAGACTATTACATGTTTTAGCTAGTCTAGAGTCAATGTTAGATG TATTGGATACATTAATTAGGTCTAGAAATATCCAATTTCATAATTTGAAGTCTAATGATTCACAGAAGTTCAAAGTCATT CAAAAGTCTTCCATTAAACCCTTAAGGGTCCCATGAGTTCTAGATACATATTGGTCTGTAAACATAGATTCTTCATGTAT TCTTTTTAGAGTTGAAAGTTCAGCATTTAGATTTCAGTTAAGTATATACAGAATTGCACCCCGCATTAGTCATTGTTGTT TGAGTTTTTTTTTTCAACAAGTAACATAAGTCATTAAACACTCCCAATTTCAAGGAAATATAATTTCTACATTATCCTCG CACTCAATTAATATTTTCTCATTTGATGTTGTTGGGATGCCAAAAGACAAGGATAAAGTTGGAAAAAAGAAAGTTATTCT TTCTAGGTAGTCTAAAGTTACAACTTACAAATGTTTTGGAACAAACTAAAACCTATGTGACAATTATATTGAAATACAAA GAGTTATCTCACAGCAATACTTGTGTTGTGGGGATTTCCTGGTCAAAGACCCAAAACTGTTATTAGAATTAGGGATGCCT AACTCAACCCAAAAGCTAGCTCGAGAGTTGAGGGTTGCTCCAATGTGGGACTTCTAACACACCCCCTCACGCCCAGGGCT GGACATCTGGAGCGTGGAATGAACATCAACAGGTGGCCCAAATATGAGAGGTCTCCACAACAAATGGATCTAGGATAGGC TCTGATACCATATTAGAATTTGGGAGGCATATACTCAACCACAAAAGCTTGCTCAAGAGTTGAGGTTTGCACTACCCTTA TAAAGGCTATCTATGCTCTATATCTAGCCAATGTGGTACTTCTAACAACTATATATAGTATTGAGTTTCTTTTCACCGTT AGATAAGAAATTGACAGTTTGATTTCTAGCCAAGGAAATTGTTAGAAACCCCCTCAAACAGAATACGATATTTCGGAACG ATGACTGAGCAAACTGAGACAAAGAAGAAAAAGAACACATCTGTTATTGGAGGAAATTGAGAACTGAAGACTCAGCACAT CTCACTCACAATGTTCAGTTATATTTTTTCTCAATTTAGAAAAAACATTATAGTTGAGAATAACTTACCACATATGCCAG GTGTCATGCTTTATGATGAGGGAGTTTGTACTAGAGGAGTATTGAAAAAATTCCCTGCTATTGGTTGTGTAATCACAAAC AGAGAACAAAGGAGAGAATCTCCTTCCACTTCCAGTAGTTTCCCCTTTTTGTAAAAGATCTAGTTCTCAATTTCCTGATG ATAACAAAATCAGAATCCCTTTTCCGTTGACCCGTTTTACTATTTAAGCTAAACCTCTTCCTTTTCCAACTATAACTGCC CAGTTAATTTTATAACTACTTTGTAACTAACTATGACTTCATGATTGATAGGTATCCGCATCCCATAGGTTAGTTAGTTA GTTGAGGGGGTTCCTCTTAGTGGAGGGTTAGTTAGTGAGTGAGACTAGAAATACGATAGTTAGAGAGAGTATCATCATCT TTTGGATAATTTGGGATTGAGATTTAGGGAGAGGAGCTAAGACTCTTGGATTTCTCAGCAATGTTGTAGTTTTCTATACT GAATAATATCAGTTTCTGCCTTATTATTGGCTAGGTTCTATCACCAACTTACTTGAGTTCTGTCAGAAGTGAACTCCTCC CACAGGAAACATTTTATCCCACATACTACCCTACCTATTTCCATTTTTTTACAATTTCACTTATCATCCAAACCTAACAT ATAAGAAATTCCTTGGCCATATTATACAAGGGTGTTTAAAAGGGTTTTTTGCGTTTTGCATGTTTTAATTTTATATCATA GGAAGATATTATTATTTTGCAAATGACTATTTTTTTGCAAGTTTAGTTACGTTTGTGATGATTACTGGTCCAAGTATGAA ATAAAGGTACTAAAACAGGGTACTATCTTTTATATCGAGGTTTCCTTCTTACTTTTTTGAAATTATCTGGAATTTTCTGA CACTACTTTTCGACAATTGGGAGTTTGCATTGACAAGACATTTGCCTATTGCAGCAACTAGTCATATATGAGACATCAGC TTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCCTCACATGTGTTCTTCCAACAGAGACATGGACCTGGGC AACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGACAGAGATGTAGGATATGTTCAGGTTTTACTCAGGAAC CCATGACCGTTTTTTTTCCGCTTCTCCCAAAGTAATTTATAATATTGATTATTTCAAAATGCAGGGGATGGGGTTTTTAG CAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCC CCAATGGAAGGCTTGTATCTGGTAACAATTTTGTTCCATGAATTCATTTTTGCTGATTATTGATGTTGTCATGTATTAGG TCTGTCTTTTATAATATAAGTTCTAGAAATAATAATCTAAAACGTGTCCTTTACCCAACAACTTAAGCTTTTGGGATAAT TGGTTCATGACACGTTCCCTACAAGGAAAGGAAAGAACTGGATATGTATTAAATTTGCATGGTTGTTTCTATTGTATACT TTCTGTTGATACAATTCTCTATTCAGCATGATCACTACTATTTTGAATGTAGGCAGGATTGCCTCTAGTACAGCAATACC TCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATGATAAATCCTAGC ATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAATTTGGGATGTATT TCTGTATGAGGTTAGTGTGCTTTCCCTTAAAAGAATCATTTGTTTGTTAGAAACATTGATCTATGATTATGACATTCTTG CCTTCCAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTGGTTGGTATAATG TGACCTTGTGGCTTGTGTTAGTTATGAATTGAATCAAATTTCTACTCATTGTCAGTGTTCTGTTTCTTTATCACAGATTA AACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACGTTATTACCTTTG GCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAAATACACGTTTTC TTCCTTATCTTGGAATTTGAAATGATTATTGCAGGATTAG
CDS sequence (LotjaGi2g1v0059900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGAAAAGATTAGATGACTACGAACCAAGTCCAGTTCCTTCACCAAGAGCAGTAGATAGATTTGGGTTTGTAAA ACAAGATGCTAATACTTCTGATGGCTTAGTCAAGAGTAGATCAGCGTATGACCATGAGAGAATTAGGGAGGAGAGAAGGG TTAGAAAATGGAGGAAGATGATTGGGGTTGGCGGGAGTGATTGGAAACATTATCTCAGAAAAAAACCCCATGTTGTTAAA AGGCGTATAAGGAAAGGAATTCCTGATTGTCTAAGGGGCCTTGTTTGGCAGTTGATATCTGGAAGTCGGGACCTATTGCT CATGAATCCTGGAGTTTATGAGGTATCCGCATCCCATAGGTTAGTTAGTTATTACGTTTGTGATGATTACTGGTCCAAGT ATGAAATAAAGCAACTAGTCATATATGAGACATCAGCTTCTGAGCTAGATATAATTCGAGACATTTCTCGAACATTCCCC TCACATGTGTTCTTCCAACAGAGACATGGACCTGGGCAACGGTCCCTCTACAATGTTTTAAAAGCTTACTCAGTCTTTGA CAGAGATGTAGGATATGTTCAGGGGATGGGGTTTTTAGCAGGTCTTTTACTTCTTTATATGAGTGAGGAGGATGCATTTT GGTTGTTGGTGGCATTGCTGAAAGGAGCCGTTCATGCCCCAATGGAAGGCTTGTATCTGGCAGGATTGCCTCTAGTACAG CAATACCTCTCTCAATTTGAACTCTTGGTGAGGGAGCATCTACCAAAATTGGGAGAACATTTTTCCCAAGAAATGATAAA TCCTAGCATGTATGCCAGTCAATGGTTCATAACTGTGTTTTCATATTCCTTTCCATTCCATTTGGCTCTTCGAATTTGGG ATGTATTTCTGTATGAGGGTGTTAAAATCGTCTTTAAAGTTGGCTTGGCACTGTTGAAGTACTGCCACGATGACTTGATT AAACTACCATTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCAGATACGTTATTACCTTT GGCATATTCGATCAAGGTTCTAATCCTTTCTCTACATTTTGATTTGTTTTCACTTGTGCAGACCCAAAAATACACGTTTT CTTCCTTATCTTGGAATTTGAAATGA
Protein sequence (LotjaGi2g1v0059900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKRLDDYEPSPVPSPRAVDRFGFVKQDANTSDGLVKSRSAYDHERIREERRVRKWRKMIGVGGSDWKHYLRKKPHVVK RRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEVSASHRLVSYYVCDDYWSKYEIKQLVIYETSASELDIIRDISRTFP SHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQ QYLSQFELLVREHLPKLGEHFSQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLI KLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKVLILSLHFDLFSLVQTQKYTFSSLSWNLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 189 | 189 | - | – | |
MobiDBLite | 1 | 20 | 20 | - | – | |
PANTHER | 14 | 116 | 103 | 8.0E-151 | – | |
PANTHER | 14 | 116 | 103 | 8.0E-151 | – | |
Gene3D | 54 | 102 | 49 | 1.0E-8 | – | |
SUPERFAMILY | 68 | 260 | 193 | 2.04E-44 | ||
SMART | 83 | 323 | 241 | 2.9E-66 | ||
ProSiteProfiles | 86 | 300 | 215 | 37.2 | ||
Pfam | 89 | 319 | 231 | 6.7E-58 | ||
Gene3D | 130 | 221 | 92 | 4.9E-32 | – | |
PANTHER | 138 | 353 | 216 | 8.0E-151 | – | |
PANTHER | 138 | 353 | 216 | 8.0E-151 | – | |
Phobius | 190 | 207 | 18 | - | – | |
Phobius | 208 | 212 | 5 | - | – | |
Phobius | 213 | 234 | 22 | - | – | |
Gene3D | 228 | 363 | 136 | 1.3E-41 | – | |
SUPERFAMILY | 235 | 352 | 118 | 5.23E-34 | ||
Phobius | 235 | 274 | 40 | - | – | |
Phobius | 275 | 293 | 19 | - | – | |
Phobius | 294 | 346 | 53 | - | – | |
Phobius | 347 | 366 | 20 | - | – | |
Phobius | 367 | 381 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0059900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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