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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0062600 |
| Transcript ID | LotjaGi2g1v0062600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|B9X291|B9X291_PEA Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:14521312..14527012) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAATCAATTTTTCTTCTAAAACTAAAGTCTATGGTGTATCTAAACATATACTAAATTGAGTTTATAGTATGCCAGT TACTCCTTCCTACACTCTATAAGTACACACATACTCTCACTCCATCTGACACTTTCTCACTTTCTCTTTCCAAAACATCA TCTTCTCATAAACACACACAGCAGCTGCAGAGTACTCACCACAATTCTTCACGAATGGCATACATACAACTCCTCCAACT CCATGTTTGTTAACTAACGGTTTCTCATTTCTTCTTTTTTATTTCATCTTTCTCATCTCTTTTTATTTTCAAACATCATT CCACCTTAACCCACAAAACCAACCTCCAGAAAAACATAAAACCCAACAAAAAAAAGATGATTACTTGGAAAGATCTATAC ACTGTCCTAACAGCTGTTGTCCCTTTATATGTAGCCATGATCTTAGCATATGGTTCTGTCCGTTGGTGGAAGATATTCTC ACCGGACCAATGTTCCGGCATAAACCGTTTCGTGGCCGTATTCGCGGTTCCACTCCTTTCCTTCCATTTCATTTCCACCA ACAACCCTTACGAAATGAACTTCAGGTTCATCGCTGCAGATACACTTCAGAAAATAATCATGCTCTTTGCCTTGTTTCTG TGGACAAATTTCACCAAAAATGGTAGCCTTGAATGGATGATCACCATCTTCTCTCTTACCACTCTGCCCAACACCCTCGT CATGGGGATCCCCTTGTTAATCGCTATGTACGGCGATTACTCGGGCACCCTCATGGTCCAAGTGGTTGTACTCCAATGCA TCATATGGTACACCCTCCTCTTATTCCTCTTTGAGTACCGCGGTGCAAAGCTGCTCATCATGGAGCAGTTTCCTGAAACC GCAGCCTCAATTGTGTCATTCAAGGTTGACTCCGACGTGGTTTCTCTTGACGGTCGAGACTTTCTTGAGACTGATGCGGA GATCCGAGAGGATGGGAAGCTCCGCATCGTCGTGAGAAAGTCCAACGCGTCAAAGAGGTCATTCATGATGACCACTCCTC GACCATCGAACCTTACTGGAGCTGAGATTTACAGTCTAAGCTCCACTCCGCGAGGCTCCAACTTTAACCATGGGGAATTT TTCTCCATGATGGGTTATCAGCCCAGGCATTCTAATTTCGGACCCAATGATATGTACTCTGTTCAATCCTCTCGTGGTCC TACTCCAAGACCCTCCAATTTTGAAGAAAATTGTACTGGAGTTACTGGAAGTTCCCCCCGATTCGGGTTTTACCCGCAAC CCAACCCGGAATTCTCCACCACCACTACAACCAACACAAAAGCTTTGATAAGCCAGAACCAGAATTTGCAGCAACAGCAA CAACATCAGGCCGTTCCATTAGCAAACAAGGCTGCAAATGATGCTAAGGAGCTGCACATGTTTGTGTGGAGCTCAAGCGC GTCTCCGATTTCGGAAAGTGCTGGCCTCAACACATTTGGAACCTCCCAGCAACCGGATCAGGAGGCTAAAGAGATCAGGA TGATGGTGGCTGATGAGCACAGTAATAATCAAAGTAGGGAACCCACCAACAAAGGTAATATAATTAAGCATTCCTTAATT AATTTGGAATGCAAATTTTGTAAAATTTAATTTTCATTCAAAGTGGAAGTTTGAAATGAGGTGAGTTATATGTTTGCATA ATTAAATCAAAAGTGTGAGATTGAAATTAAGCAAAATAATTTGTTTGGATAACTTTAATAACGACTACCGAAGCTAATGC AAAAGCAAGTATAATGTGACTTTATTATAACCAAACTTGATTACCGGAAAAAGATATTTAAAACATGTTACTTCAATATT TAAGTTAGTATAGGATTTTCATCTTTTTCTAAAGTTATTATTTCTGTGATGATGGATCTGCTCCAGAACTTGGTGGGGAA GAGTTCAAGTTCAGTGGAAAGGTGGGAGAAAAAGTAGTGGAGGAAGAGAGAGAGAAAGAGGGGCCCAATGGTCTCAACAA GCTTGGCCCGAGGTCCGCCACAGAGCTCCACCCTAAGGCTGCTGGAGCCGCCGAGTCTGGCACCGGGAAACACATGCCTC CGGCGAGTGTGATGACCCGTCTCATTCTTATCATGGTGTGGAGGAAGCTTATCCGCAATCCCAACACATACTCTAGCCTC ATTGGTCTCATTTGGTCCCTCATTGCCTTTAGGTACGTTTACCCAATTTCACATCAAAGAGAAAAGGTTTAACCATTAGA CTATGATAATTGCAAAATCAGCAATAGCACTTTTCTTTTCCGAAAAAAAAAATACTTTTGATTATTACTGTATTATTATA GGTGTTTGACATGGTTATTATGACTTGTAGGTGGGATGTGCATATGCCCAAAATAATAGAGAAATCAATTTCCATACTGT CTGATGCTGGTCTTGGCATGGCTATGTTCAGTTTAGGTGAGTGGTTGCAAATTAATCTATTCCTCTAAATTCTTATTATA TTCTTACAATAACTTCACAAAAATTGATAATTGTTTTAGTGCCTCCAATTTGGGTATGATTATTATATAATAGACTAAGA ATAAGAATGGATAATGCAATGTTTAGTACCCTGGATATATGCAGTGGTTTTGATTTATAAATATATGTCAGTTGCTATAA CACCCTGGATGAGGATTCTACATGTTAAATTTATTTGTCAATATCTCTTTACATAAGTATTAACGGAAATAATTCGTAGA CACATAGATTTTCTCAATACCTATCCAACATATAATGTAGCGAGGCTTTTAACTGCTGTAAAATTTATTAGTGGTTAAAA AAATCCGCTAAATTGTGTGTTAGAAATGTGATGAGAAAATTTATGTGTCCGTGTATAAGAACTCAAGTATTACATGGATG AGATGCTAAAGAGAAAAATTGATAAATTTATAATTGGCATTGTCATATGATGTTGATCCTCCGTATTATGCCATTGCTTT GTCTTAATTATGAAAAGAGGTGTAGTAAATTCAATCGTGCAACATGATTGAATGGATATGTATGAATCTATAAAATCCTT GGATTCGGGACAAAGCAAGTAAACAAACAACTCATGGCCATTCATTCTCGTGATGGTTGTTACCAAGTACCATGACCCAA ACGATGTTCACTTGTTGAGCATAATGTCCCCGACACATGGGACCCTGTGATATTAACAACGTTCCCTTGTGCTCCACAAG CTATAGACAAAGGTGGTGGTGACGGCTACCATTTTGGACCCCAATTAGGCATAAAGGTGGTTGATTTAATGGAATCACAA AGTCCAATACATCTTTCATTTTCTATATTGGCTTTTGGGATGTGTACAATGTTTTTTTTCACCAAGCGTGGCACTCAGCC AATAGAAATCATTCAAATGAGTTTTTGACTCCGTTGAGATATCTATTAGCATATTTTTTTATATAGTTATTATAAATGGT AGAGCAACTTTTGCTTCTAAATTAGTTTTTGGGATAGTGTTAGGCTTTCTAAAACCTAGGTCAGAAGGTGAGGATTGTCT TCCCACATATAAGAAGCAGGCTATTTTGAGCATATTTCTAACTAATGTAGAACTTCTCAATAATCTCCCAACAAACCGTT TTTCTATACACACTCCAATATTCATCTGAACTCACCTTTTTGTCACATTTCCTAAGCTTCTTTGTATTGGAATATCTTCT CGCATGCTTGGATGAACTTATCTTCCTCATAATTCATTGTGCCATTAAAAAACTATATACTGAAGCTTCTCTCACGAATA AATTTTCACTTAGAATCAATTGTTTGAAACATTTTCAAACATGCACTATTGTCCTTTTGTCAATTTTTATTTTTATTTTC TATGCTTTTATTTGAAGATTGAGTTTGATTTGGTGGTTGGGTTTGATGTTTGTATTGTAGGTCTTTTTATGGCTCTTCAA CCCAAGATAATTGCATGTGGGAACTCTGTAGCCACATTTGCCATGGCTATTAGATTCCTTACAGGTCCAGCAGTAATGGC AGCAGCTTCCATCGCTGTTGGCCTACGTGGTACCCTTCTACATGTAGCTATTGTTCAGGTTATCAATTTTAACTTCCTAT TTTGTCTTAACATGAAGATAATGAATGAATACTAATCAATTCAAACGGTCAATGTTTACAAAACATTCCTTGGTTTTCCA GTTATTTCTTTACAAACTGTCAATGTTTTAAATTAAAATGTGATAATGATGTGGATACATCGCAATAATTGAAATTTATG AAAATTTGATAAATGCACTCTTATTTGGTATTACATTTTTTGTCCCACCAATTAAATTGTGCCTCATTATAATTAAAAAG ATGGGTAGGATAAAGAAAGTGACACCAAATAAGGACGGGAGATTTCCATCCCTAATATGAGCACAATTGTCGTCACGAAT ACTTCAACAAGTCGCGAGTCCAATTGCATTCATGCACCTTGATTTCAAGTCGTGCTCACCATTATTAAATATGATTTTTT TATTAATTAATCACAAACATTTTATGATTGTTTGAATTACAATTAATTAAAGGATCAATCTAGGTCTACTTTTGACGATT TTGCCTTACAGAAATGTTGTGGTTGAAAACAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCCAAGGAGTAC AATGTCCATCCAGCAATTCTTAGTACAGCGTGAGCAATCAAACCGGCCTCCTTATTTTCGTCATCATATTCTCCATTTAT CTCAAGTAAAGAATTAGAAATTGACCGTTTTCCAATAAATTGAAATTGCAGGGTTATATTTGGGATGCTAATTGCACTTC CAATTACTCTAGTCTACTACATACTCCTTGGGTTGTAAATATCTAATTCCATGGTAATCATAAACATACAAGGAAAAATT AAGCTAAAGATTTAAACCATTTGATACTTTGGGAGCTAGTAAACATGCATGGGAAGCACAGTGAAGTATTATTCTATTCA TAAGGAGGAGAATTTTTCCTTAACTAGTAATTTCACCAACACATCGATGTTATCATTCCAAGTTACCAAAATTTTGGAAA CTTGTGAAAAATTGCCACATTTTGAAGATGATGGAAATTTTGTACACCCTCATTGAGGAAGTAGCGCAAGTATAGAATGG GAGGCATAACACAGGAAAACAGGGGAAAGCTAAGCTAGTAGCTTAATCAAAGTCAGGGATATATAGAAATGGTCCCCTCT CTATCATCATATACAAATTTTATGAGAAAAATTGTTTAGGTTGTCAACTTCAAGAGATGGTTGAATAAGGTGAAGGGAAT GGTAATGGAAAATTAAGATGAGGAAACAACAATTTTTTTTCAACTTTTAATGATGATTATTATTATTGTTGGTCTTTTGT CTTGTGATTGTCCATGTATCCAGCAATTATTTAAGTTTGATGTCTACCTTTTGTTATGTATTTTAGTTAGGTTTTTCTGA CTAATTTAAAAAAATTCTTCAATAGATCCTTATGGGACGGTGTTAAATTTTTACACCAAATGTACGCCATCTTTTGCATG TGGTTAGATATAATAATAATATTTAAATTAGTTTCTGAAAAGGTCAATAGTAGGGATGGCAATGGGTTTTGGGTACCCGC AAAAAATGCTCATCATGGATAGGGTAAATACCCGCTAAATGGGTATGAAGTGGTATGGGGTTGGGCATGGGTAAATCCCC ACAAAAAGTAGTGGATATGGG
CDS sequence (LotjaGi2g1v0062600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTACTTGGAAAGATCTATACACTGTCCTAACAGCTGTTGTCCCTTTATATGTAGCCATGATCTTAGCATATGGTTC TGTCCGTTGGTGGAAGATATTCTCACCGGACCAATGTTCCGGCATAAACCGTTTCGTGGCCGTATTCGCGGTTCCACTCC TTTCCTTCCATTTCATTTCCACCAACAACCCTTACGAAATGAACTTCAGGTTCATCGCTGCAGATACACTTCAGAAAATA ATCATGCTCTTTGCCTTGTTTCTGTGGACAAATTTCACCAAAAATGGTAGCCTTGAATGGATGATCACCATCTTCTCTCT TACCACTCTGCCCAACACCCTCGTCATGGGGATCCCCTTGTTAATCGCTATGTACGGCGATTACTCGGGCACCCTCATGG TCCAAGTGGTTGTACTCCAATGCATCATATGGTACACCCTCCTCTTATTCCTCTTTGAGTACCGCGGTGCAAAGCTGCTC ATCATGGAGCAGTTTCCTGAAACCGCAGCCTCAATTGTGTCATTCAAGGTTGACTCCGACGTGGTTTCTCTTGACGGTCG AGACTTTCTTGAGACTGATGCGGAGATCCGAGAGGATGGGAAGCTCCGCATCGTCGTGAGAAAGTCCAACGCGTCAAAGA GGTCATTCATGATGACCACTCCTCGACCATCGAACCTTACTGGAGCTGAGATTTACAGTCTAAGCTCCACTCCGCGAGGC TCCAACTTTAACCATGGGGAATTTTTCTCCATGATGGGTTATCAGCCCAGGCATTCTAATTTCGGACCCAATGATATGTA CTCTGTTCAATCCTCTCGTGGTCCTACTCCAAGACCCTCCAATTTTGAAGAAAATTGTACTGGAGTTACTGGAAGTTCCC CCCGATTCGGGTTTTACCCGCAACCCAACCCGGAATTCTCCACCACCACTACAACCAACACAAAAGCTTTGATAAGCCAG AACCAGAATTTGCAGCAACAGCAACAACATCAGGCCGTTCCATTAGCAAACAAGGCTGCAAATGATGCTAAGGAGCTGCA CATGTTTGTGTGGAGCTCAAGCGCGTCTCCGATTTCGGAAAGTGCTGGCCTCAACACATTTGGAACCTCCCAGCAACCGG ATCAGGAGGCTAAAGAGATCAGGATGATGGTGGCTGATGAGCACAGTAATAATCAAAGTAGGGAACCCACCAACAAAGAA CTTGGTGGGGAAGAGTTCAAGTTCAGTGGAAAGGTGGGAGAAAAAGTAGTGGAGGAAGAGAGAGAGAAAGAGGGGCCCAA TGGTCTCAACAAGCTTGGCCCGAGGTCCGCCACAGAGCTCCACCCTAAGGCTGCTGGAGCCGCCGAGTCTGGCACCGGGA AACACATGCCTCCGGCGAGTGTGATGACCCGTCTCATTCTTATCATGGTGTGGAGGAAGCTTATCCGCAATCCCAACACA TACTCTAGCCTCATTGGTCTCATTTGGTCCCTCATTGCCTTTAGGTGGGATGTGCATATGCCCAAAATAATAGAGAAATC AATTTCCATACTGTCTGATGCTGGTCTTGGCATGGCTATGTTCAGTTTAGGTCTTTTTATGGCTCTTCAACCCAAGATAA TTGCATGTGGGAACTCTGTAGCCACATTTGCCATGGCTATTAGATTCCTTACAGGTCCAGCAGTAATGGCAGCAGCTTCC ATCGCTGTTGGCCTACGTGGTACCCTTCTACATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGT GTTTGCCAAGGAGTACAATGTCCATCCAGCAATTCTTAGTACAGCGGTTATATTTGGGATGCTAATTGCACTTCCAATTA CTCTAGTCTACTACATACTCCTTGGGTTGTAA
Protein sequence (LotjaGi2g1v0062600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITWKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISTNNPYEMNFRFIAADTLQKI IMLFALFLWTNFTKNGSLEWMITIFSLTTLPNTLVMGIPLLIAMYGDYSGTLMVQVVVLQCIIWYTLLLFLFEYRGAKLL IMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIREDGKLRIVVRKSNASKRSFMMTTPRPSNLTGAEIYSLSSTPRG SNFNHGEFFSMMGYQPRHSNFGPNDMYSVQSSRGPTPRPSNFEENCTGVTGSSPRFGFYPQPNPEFSTTTTTNTKALISQ NQNLQQQQQHQAVPLANKAANDAKELHMFVWSSSASPISESAGLNTFGTSQQPDQEAKEIRMMVADEHSNNQSREPTNKE LGGEEFKFSGKVGEKVVEEEREKEGPNGLNKLGPRSATELHPKAAGAAESGTGKHMPPASVMTRLILIMVWRKLIRNPNT YSSLIGLIWSLIAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAIRFLTGPAVMAAAS IAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 623 | 623 | 3.5E-167 | ||
| PANTHER | 1 | 623 | 623 | 0.0 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 623 | 623 | 0.0 | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Pfam | 9 | 618 | 610 | 2.1E-195 | ||
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 59 | 20 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 101 | 11 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 102 | 126 | 25 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 478 | 326 | - | – | |
| MobiDBLite | 417 | 456 | 40 | - | – | |
| TMHMM | 474 | 496 | 23 | - | – | |
| Phobius | 479 | 496 | 18 | - | – | |
| Phobius | 497 | 507 | 11 | - | – | |
| TMHMM | 508 | 530 | 23 | - | – | |
| Phobius | 508 | 529 | 22 | - | – | |
| Phobius | 530 | 540 | 11 | - | – | |
| TMHMM | 540 | 562 | 23 | - | – | |
| Phobius | 541 | 563 | 23 | - | – | |
| Phobius | 564 | 568 | 5 | - | – | |
| TMHMM | 567 | 589 | 23 | - | – | |
| Phobius | 569 | 589 | 21 | - | – | |
| Phobius | 590 | 595 | 6 | - | – | |
| Phobius | 596 | 620 | 25 | - | – | |
| TMHMM | 599 | 621 | 23 | - | – | |
| Phobius | 621 | 623 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0062600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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