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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0129100 |
| Transcript ID | LotjaGi2g1v0129100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29910.1 chlorophyll A/B binding protein 3; Swiss-Prot: sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic; TrEMBL-Plants: tr|M1B1H4|M1B1H4_SOLTU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0129100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47131072..47131823) extracted from Lotus japonicus Gifu genome v1.2.
GTCAGGCAATCAAGCTTGCCCCCTCCATTCAGGACACTGGAAGGATCACCATGAGAAAAACAACCACCAAATCCAAACCC GTTTCTTCTGGAAGTCCATGGTACGGCCCAGACCGTGTCAAATACTTGGGCCCATTCTCAGGTGAGTCCCCATCCTACCT CACTGGTGAATTCCCAGGCGACTATGGTTGGGACACTGCCGGACTTTCTGCTGACCCAGAGACATTTGCGAAAAACCGTG AACTTGAGGTCATTCACAGTAGATGGGCCATGTTGGGAGCCCTAGGCTGTGTCTTCCCCGAGCTCTTGGCCCGCAACGGT GTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGGTCCCAAATTTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCC GAGCCTAGTCCATGCACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCCGTTGAAGGTTACCGTA TTGCTGGTGGGCCACTTGGTGAGGTGACTGACCCACTGTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGACGAC CCAGAAGCTTTTGCAGAATTGAAGGTGAAAGAACTAAAAAATGGTAGGTTAGCCATGTTCTCCATGTTTGGTTTCTTTGT TCAAGCTATTGTTACTGGAAAGGGACCTTTGGAGAACCTTGCAGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGG CCTTTGCCACAAACTTTGTCCCTGGAAAGTAA
CDS sequence (LotjaGi2g1v0129100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAAAACAACCACCAAATCCAAACCCGTTTCTTCTGGAAGTCCATGGTACGGCCCAGACCGTGTCAAATACTTGGG CCCATTCTCAGGTGAGTCCCCATCCTACCTCACTGGTGAATTCCCAGGCGACTATGGTTGGGACACTGCCGGACTTTCTG CTGACCCAGAGACATTTGCGAAAAACCGTGAACTTGAGGCCGGGTCCCAAATTTTCAGTGAAGGTGGACTTGACTACTTG GGTAACCCGAGCCTAGTCCATGCACAAAGCATTCTCGCAATCTGGGCCACCCAAGTTATCTTGATGGGTGCCGTTGAAGG TTACCGTATTGCTGGTGGGCCACTTGGTGAGGTGACTGACCCACTGTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTG CTGACGACCCAGAAGCTTTTGCAGAATTGAAGGTGAAAGAACTAAAAAATGGTAGGTTAGCCATGTTCTCCATGTTTGGT TTCTTTGTTCAAGCTATTGTTACTGGAAAGGGACCTTTGGAGAACCTTGCAGACCACCTTGCTGACCCAGTCAACAACAA TGCTTGGGCCTTTGCCACAAACTTTGTCCCTGGAAAGTAA
Protein sequence (LotjaGi2g1v0129100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEAGSQIFSEGGLDYL GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 66 | 66 | 1.9E-129 | – | |
| PANTHER | 1 | 66 | 66 | 1.9E-129 | ||
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 152 | 152 | - | – | |
| SUPERFAMILY | 16 | 196 | 181 | 1.96E-58 | – | |
| Gene3D | 24 | 66 | 43 | 1.8E-14 | ||
| Pfam | 34 | 165 | 132 | 1.0E-28 | ||
| PANTHER | 66 | 199 | 134 | 1.9E-129 | – | |
| PANTHER | 66 | 199 | 134 | 1.9E-129 | ||
| Gene3D | 67 | 192 | 126 | 2.5E-55 | ||
| Phobius | 153 | 173 | 21 | - | – | |
| Phobius | 174 | 199 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0129100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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