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LotjaGi2g1v0230400.2

Overview

Field Value
Gene ID LotjaGi2g1v0230400
Transcript ID LotjaGi2g1v0230400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0230400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:68990994..68993130) extracted from Lotus japonicus Gifu genome v1.2.

CCTATCAGCTCTATCCACCGGCGAAGAATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGA TTTGATCGTTCAAATCCTGCTGAGATTACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTC TGGTTTCCGATCCCCAATTCGGTGAATCCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTAC GCTTGTGACATTAAATCCATAGATGTAGATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCG TGCATCACCCCGTCTTCCGTGGAACCCTGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTG GTGAAGCTTTTCTGTGGAATCCATCAACTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACAT GGTTTTGGGTATGATTCATCAAGGGATGACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGA TGATCAGCGCGCTATAGTTGATCATCCTACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGG TTGCTAGTGATGTTCAATATGTGGAATTGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTG CATTGGTTGGTTATCTCTTACGAAACCAAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGAT TTCATTGCCGCAAGTTTTAGCCGGGGAATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTAT GTTACCCAGGTAGCATGACTTCAATGGCTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTA TTTGCTTTTTCGACTTGTAACATTCCCTACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATC AAATGGCTATGGGAGATTAATGATACTTGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATA AATATGAATATATTCCAATTCATTGTGGTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTA TCACTCCCTAATGACTTTGAGGAAGAAGGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGA GGAAGGAAGTGATGATGACCAGCTGTTGAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAGTAACTGCCAATAAGAA TTAGTGTATGTAAGTTCTTCAATCCTTTTCACCATTTTATTTATATTACTATTTATTGAGCATAACGAAAAATGAGAAGT CATGTGAAGAGGAAATTATACAAGAAGATGATTCCTTAACCTATCTTGTACTCTCTCCTTCTTAAGTGACTATATTTCTT TCTCCATAAATAAGTGTGACACTTGAAATTGCTAGGAAAGATGAGGTTTGGTGGTGGACTGAATTTACTAATTGATAGGA AATTCATTTGGTGTTGCCTTTGCTTAGAATGATCAAAGACAATTTTGGTGGAAAATCATATAAGAAAAACAAGGTCTTGG GTTAAATATCAGTTCTCAAACTAAGATCTTGTAGGATTTATAAATTATAATATGGTGACATTTAAAATAAGCTCATCTTT TCCAGCAGGCCATGAAGGGTGCAAAAATGCTCTACACAGTTATGCTTGATGTCTTGGCTTGCCTTCAAATGATGATATTG CAAGAAGAGAGCTATCATTTGGAAGAGAATGTTACTTATACAATGTTAAGTCATCTCGCTTCAGTAGTGTTTTCTTAGTC GTGGTTTCAGTAAGTTGGAGTCGATACAGTCTTTCGAATTATATTTTAAAGTATGAGTTAGGAAATCCTAGCAGGAGTTA GTACATGCTATTTAGCAACTTTATTTTTTTCCCTTTTAATATTGTTATTGTAGTTGCAGTTCGTTCCTCTTATTGTCGTT AATATGGTTTTCAGGTTTGATCTCTTCTTATCTGTACTGTAATTAAGTACCTCTTCT 

CDS sequence (LotjaGi2g1v0230400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGATTTGATCGTTCAAATCCTGCTGAGATT ACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTCTGGTTTCCGATCCCCAATTCGGTGAAT CCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTACGCTTGTGACATTAAATCCATAGATGTA GATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCGTGCATCACCCCGTCTTCCGTGGAACCC TGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTGGTGAAGCTTTTCTGTGGAATCCATCAA CTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACATGGTTTTGGGTATGATTCATCAAGGGAT GACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGATGATCAGCGCGCTATAGTTGATCATCC TACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGGTTGCTAGTGATGTTCAATATGTGGAAT TGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTGCATTGGTTGGTTATCTCTTACGAAACC AAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGATTTCATTGCCGCAAGTTTTAGCCGGGGA ATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTATGTTACCCAGGTAGCATGACTTCAATGG CTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTATTTGCTTTTTCGACTTGTAACATTCCC TACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATCAAATGGCTATGGGAGATTAATGATACT TGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATAAATATGAATATATTCCAATTCATTGTG GTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGGAAGAA GGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGAGGAAGGAAGTGATGATGACCAGCTGTT GAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAG 

Protein sequence (LotjaGi2g1v0230400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNRHRRRTEIPTITLPHDLIVQILLRLPVRSLIRFKSVCKSWLSLVSDPQFGESHFDLAASPTHRCLTEGYACDIKSIDV DAPSLHNDSAVVNLEYPRASPRLPWNPVEFLGSCRGFILVAYQCGEAFLWNPSTGVHKKFEVIEELYYNVHGFGYDSSRD DYLVVHLELIDLEHYLKDDQRAIVDHPTRISIFSSKKNAWSCPEVASDVQYVELDSDRVECLAGCLLNEALHWLVISYET KLHVIIVFDLVERSLSEISLPQVLAGELEHKEYCLRVMRECLCLCYPGSMTSMAEIWMMKTYEVQSSWTKLFAFSTCNIP YNVFYPICFTKHGRIFGSNGYGRLMILDDKGWLHDLSAARPEPDKYEYIPIHCGAFRRELMHCGMYRESLLSLPNDFEEE GVDSEEAREDEQLTSFFEEGSDDDQLLSSLLKSSEDDK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 9 59 51 10.425
PANTHER 12 361 350 5.9E-86
PANTHER 12 361 350 5.9E-86
Gene3D 14 51 38 8.8E-10
SUPERFAMILY 14 83 70 1.14E-14
Pfam 15 51 37 7.8E-8
SMART 15 55 41 9.3E-8
TIGRFAM 113 336 224 2.5E-20
Pfam 226 322 97 1.2E-6

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0230400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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