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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0230400 |
| Transcript ID | LotjaGi2g1v0230400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0230400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68990994..68993130) extracted from Lotus japonicus Gifu genome v1.2.
CCTATCAGCTCTATCCACCGGCGAAGAATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGA TTTGATCGTTCAAATCCTGCTGAGATTACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTC TGGTTTCCGATCCCCAATTCGGTGAATCCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTAC GCTTGTGACATTAAATCCATAGATGTAGATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCG TGCATCACCCCGTCTTCCGTGGAACCCTGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTG GTGAAGCTTTTCTGTGGAATCCATCAACTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACAT GGTTTTGGGTATGATTCATCAAGGGATGACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGA TGATCAGCGCGCTATAGTTGATCATCCTACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGG TTGCTAGTGATGTTCAATATGTGGAATTGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTG CATTGGTTGGTTATCTCTTACGAAACCAAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGAT TTCATTGCCGCAAGTTTTAGCCGGGGAATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTAT GTTACCCAGGTAGCATGACTTCAATGGCTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTA TTTGCTTTTTCGACTTGTAACATTCCCTACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATC AAATGGCTATGGGAGATTAATGATACTTGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATA AATATGAATATATTCCAATTCATTGTGGTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTA TCACTCCCTAATGACTTTGAGGAAGAAGGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGA GGAAGGAAGTGATGATGACCAGCTGTTGAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAGTAACTGCCAATAAGAA TTAGTGTATGTAAGTTCTTCAATCCTTTTCACCATTTTATTTATATTACTATTTATTGAGCATAACGAAAAATGAGAAGT CATGTGAAGAGGAAATTATACAAGAAGATGATTCCTTAACCTATCTTGTACTCTCTCCTTCTTAAGTGACTATATTTCTT TCTCCATAAATAAGTGTGACACTTGAAATTGCTAGGAAAGATGAGGTTTGGTGGTGGACTGAATTTACTAATTGATAGGA AATTCATTTGGTGTTGCCTTTGCTTAGAATGATCAAAGACAATTTTGGTGGAAAATCATATAAGAAAAACAAGGTCTTGG GTTAAATATCAGTTCTCAAACTAAGATCTTGTAGGATTTATAAATTATAATATGGTGACATTTAAAATAAGCTCATCTTT TCCAGCAGGCCATGAAGGGTGCAAAAATGCTCTACACAGTTATGCTTGATGTCTTGGCTTGCCTTCAAATGATGATATTG CAAGAAGAGAGCTATCATTTGGAAGAGAATGTTACTTATACAATGTTAAGTCATCTCGCTTCAGTAGTGTTTTCTTAGTC GTGGTTTCAGTAAGTTGGAGTCGATACAGTCTTTCGAATTATATTTTAAAGTATGAGTTAGGAAATCCTAGCAGGAGTTA GTACATGCTATTTAGCAACTTTATTTTTTTCCCTTTTAATATTGTTATTGTAGTTGCAGTTCGTTCCTCTTATTGTCGTT AATATGGTTTTCAGGTTTGATCTCTTCTTATCTGTACTGTAATTAAGTACCTCTTCT
CDS sequence (LotjaGi2g1v0230400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCGCCACCGAAGGAGAACCGAGATCCCCACCATCACTCTCCCTCACGATTTGATCGTTCAAATCCTGCTGAGATT ACCAGTTCGATCTCTGATCCGTTTCAAATCCGTCTGCAAATCATGGCTCTCTCTGGTTTCCGATCCCCAATTCGGTGAAT CCCATTTTGACCTAGCTGCTTCTCCAACCCACCGATGCCTCACAGAAGGTTACGCTTGTGACATTAAATCCATAGATGTA GATGCACCATCACTTCACAATGATTCTGCTGTAGTAAACCTCGAATATCCGCGTGCATCACCCCGTCTTCCGTGGAACCC TGTTGAGTTCTTAGGTTCTTGTAGAGGGTTTATACTTGTAGCTTATCAATGTGGTGAAGCTTTTCTGTGGAATCCATCAA CTGGTGTCCATAAAAAATTTGAAGTCATTGAAGAGTTGTACTATAATGTACATGGTTTTGGGTATGATTCATCAAGGGAT GACTATTTGGTTGTTCATTTAGAATTGATTGATTTGGAACACTATCTCAAGGATGATCAGCGCGCTATAGTTGATCATCC TACTCGCATTTCGATTTTTTCCTCGAAAAAAAATGCCTGGTCTTGCCCTGAGGTTGCTAGTGATGTTCAATATGTGGAAT TGGATTCGGATCGTGTTGAATGCCTAGCCGGGTGCTTGTTGAACGAGGCGCTGCATTGGTTGGTTATCTCTTACGAAACC AAACTTCATGTGATTATTGTCTTTGATTTGGTTGAAAGGAGTTTGTCGGAGATTTCATTGCCGCAAGTTTTAGCCGGGGA ATTAGAACATAAAGAATATTGTTTGAGGGTCATGAGGGAATGTCTCTGCCTATGTTACCCAGGTAGCATGACTTCAATGG CTGAGATTTGGATGATGAAAACATATGAAGTGCAGTCATCTTGGACTAAGTTATTTGCTTTTTCGACTTGTAACATTCCC TACAATGTCTTTTATCCAATATGTTTCACCAAACATGGAAGAATTTTTGGATCAAATGGCTATGGGAGATTAATGATACT TGATGACAAAGGATGGCTGCATGATCTGAGTGCAGCTCGCCCTGAACCCGATAAATATGAATATATTCCAATTCATTGTG GTGCGTTTAGAAGGGAATTAATGCATTGTGGTATGTATAGAGAGAGTTTACTATCACTCCCTAATGACTTTGAGGAAGAA GGTGTTGACTCTGAGGAAGCAAGAGAAGACGAGCAGCTGACGAGTTTCTTTGAGGAAGGAAGTGATGATGACCAGCTGTT GAGTTCCTTGTTGAAGTCAAGTGAAGATGACAAATAG
Protein sequence (LotjaGi2g1v0230400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRHRRRTEIPTITLPHDLIVQILLRLPVRSLIRFKSVCKSWLSLVSDPQFGESHFDLAASPTHRCLTEGYACDIKSIDV DAPSLHNDSAVVNLEYPRASPRLPWNPVEFLGSCRGFILVAYQCGEAFLWNPSTGVHKKFEVIEELYYNVHGFGYDSSRD DYLVVHLELIDLEHYLKDDQRAIVDHPTRISIFSSKKNAWSCPEVASDVQYVELDSDRVECLAGCLLNEALHWLVISYET KLHVIIVFDLVERSLSEISLPQVLAGELEHKEYCLRVMRECLCLCYPGSMTSMAEIWMMKTYEVQSSWTKLFAFSTCNIP YNVFYPICFTKHGRIFGSNGYGRLMILDDKGWLHDLSAARPEPDKYEYIPIHCGAFRRELMHCGMYRESLLSLPNDFEEE GVDSEEAREDEQLTSFFEEGSDDDQLLSSLLKSSEDDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 59 | 51 | 10.425 | ||
| PANTHER | 12 | 361 | 350 | 5.9E-86 | – | |
| PANTHER | 12 | 361 | 350 | 5.9E-86 | – | |
| Gene3D | 14 | 51 | 38 | 8.8E-10 | – | |
| SUPERFAMILY | 14 | 83 | 70 | 1.14E-14 | ||
| Pfam | 15 | 51 | 37 | 7.8E-8 | ||
| SMART | 15 | 55 | 41 | 9.3E-8 | ||
| TIGRFAM | 113 | 336 | 224 | 2.5E-20 | ||
| Pfam | 226 | 322 | 97 | 1.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0230400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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