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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0246500 |
| Transcript ID | LotjaGi2g1v0246500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein KINESIN LIGHT CHAIN-RELATED 3; TAIR: AT3G27960.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LII8|KLCR2_ARATH Protein KINESIN LIGHT CHAIN-RELATED 2; TrEMBL-Plants: tr|A0A151R9K3|A0A151R9K3_CAJCA Nephrocystin-3; Found in the gene: LotjaGi2g1v0246500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71213049..71215386) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGAGAGAGCTATGGATGAGTTGAACATGAATATTGCAGGAGAGGGGCCTAGTGGGAGTTATACACCCCATAAGGA TAACTTCAATCAACAAGCATCTCCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTAGTGACTCAATTGATTTGGCTA TTGATGGTGTGGTGGATACCTCAATTGAGCAATTGTATTACAATGTGTGTGAAATGCGAAGCTCTGATCAATCACCCTCC AGGGCTAGCTTTTACTCATATGGTGAAGAGTCAAGAATTGATTCAGAATTGGGCCATCTTGTTGGAGGTATCTTGGAGAT TACAAAGGAGGTGGTTACAGAGAATAAAGAAGAGTCCAACGGCAATGCTGCTGAGAAAGATATTGTGTCATGTGGCAAGG AAGCTACAAAGAAGGATAATAACCAATCACATTCACCAAGCTCAAGGATCATTGAAGGATCAGCCAAGTCAACCCCCAAA AGCAGAAATTTGCGTGAGAGACCATCAACTGACAAGAGGAGTGAAAGGAGCAGCAGAAAAGGAAGTCTTTACCCTATGAG GAAGCATAGGAGCCTTGCTTTGAGGGGGATCATTGAGGAACGTATTGCCACTGGGTTAGATAATCCAGATTTGGGACCAT TTTTGCTCAAGCAAACAAGAGATATGATCTCTTCAGGTGAGAATCCACAGAAAGCTCTTGATTTGGCTCTTAGAGCTCTG AAATCATTTGAGATGTGTGCAGATGGGAAACCCAGTTTAGAATTGGTCATGTGTCTGCATGTCTTGGCAACAATTTACTG TAATTTAGGACAATATAATGAGGCTATTCCCATTCTTGAGCGCTCCATTGATATTCCTGTGTTAGAGGATGGCCAAGATC ATGCATTGGCCAAGTTTGCAGGATGCATGCAGTTGGGTGATACTTATGCAATGATGGGGAACATTGAGAATTCTATACTG TTTTACACAGCAGGACTTGAGATTCAAGGGCAGGTCTTGGGGGAAACTGACCCGAGATTTGGCGAGACGTGTCGGTATGT GGCTGAGGCTCATGTTCAGGCTCTGCAATTTGACGAGGCTGAGAGGCTGTGTCAGATGGCTCTTGAAATTCACAGGGGAA ATGGAAATGGATCTTCTGCTTCTGTTGAAGAATCTGCAGATAGGAGACTAATGGGGCTTATCTATGACTCAAAGGGTGAT TATGAAGCTGCATTAGAGCACTACGTTCTGGCAAGCATGGCCATGTCAGCAAATGGCCAAGAACAAGATGTGGCTTCAGT TGATTCCAGCATAGGTGATGCCTATCTAGCATTGGCACGCTACGATGAGGCGGTGTTCTCTTATCAGAAAGCACTCACTG TGTTCAAATCAACCAAAGGAGAGAACCATCCAAATGTTGCTTCAGTCTATGTAAGGTTAGCTGATTTGTACAACAAAATA GGAAAATTCAAGGATTCAAAATCCTACTGTGAGAATGCACTCAGAATTTTCGGAAAGAGCAAACCAGGAATCCCCCCAGA AGAGATTGCTAATGGTTTAATAGATGTTGCTGCTATCTATCAATCCATGAATGATTTGGAGAAGGGGTTGAAGTTACTCA AAAAGGCCTTGAAGATATATGGCCATGCTCCTGGTCAACAAAGTACTATTGCAGGGATTGAGGCACAAATGGGGGTTATG TATTACATGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCGTTGCCAAGTTTCGTGCCAGTGGAGAGAA AAAATCTGCTTTGTTTGGGATTGCTTTGAACCAAATGGGTCTTGCATGTGTGCAACGTTATGCTATAAATGAAGCAGCAG ATTTGTTTGAAGAGGCCAGGACTATATTGGAGAAAGAGTATGGTCAATATCACCCAGACACCTTAGGGGTTTATAGCAAT CTAGCAGGAACCTATGATGCAATGGGAAGGTAATATTTTCATTGATGACTAACTCTCCGTAGTCCTTATTGTTCTGGCTT ATAATTATGGTATTTATGAGTGCTACTTTCTTCATCTCTTTTGTTTACAACTTTATGCAGTATAAGAATACTTGGAAATT TCAGATTTTAATTGCTGATATTTCTTGTGATAATTTTGCAGAGTGGATGATGCCATTGAGATTTTGGAATTTGTGGTTGG AATGAGAGAAGAGAAGCTCGGAACAGCGAACCCCGATGTGGATGACGAGAAACGTAGATTGGCAGAATTGCTGAAAGAAG CAGGCAGGGGTCGGAATAGGAAATCGAAAAGATCATTGGAAACTCTCCTTGATGCCAATTCTCGGCTTATAAAAAACAAT AGCATTAAGGTCCTATAA
CDS sequence (LotjaGi2g1v0246500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCATAGGAGCCTTGCTTTGAGGGGGATCATTGAGGAACGTATTGCCACTGGGTTAGATAATCCAGATTTGGG ACCATTTTTGCTCAAGCAAACAAGAGATATGATCTCTTCAGGTGAGAATCCACAGAAAGCTCTTGATTTGGCTCTTAGAG CTCTGAAATCATTTGAGATGTGTGCAGATGGGAAACCCAGTTTAGAATTGGTCATGTGTCTGCATGTCTTGGCAACAATT TACTGTAATTTAGGACAATATAATGAGGCTATTCCCATTCTTGAGCGCTCCATTGATATTCCTGTGTTAGAGGATGGCCA AGATCATGCATTGGCCAAGTTTGCAGGATGCATGCAGTTGGGTGATACTTATGCAATGATGGGGAACATTGAGAATTCTA TACTGTTTTACACAGCAGGACTTGAGATTCAAGGGCAGGTCTTGGGGGAAACTGACCCGAGATTTGGCGAGACGTGTCGG TATGTGGCTGAGGCTCATGTTCAGGCTCTGCAATTTGACGAGGCTGAGAGGCTGTGTCAGATGGCTCTTGAAATTCACAG GGGAAATGGAAATGGATCTTCTGCTTCTGTTGAAGAATCTGCAGATAGGAGACTAATGGGGCTTATCTATGACTCAAAGG GTGATTATGAAGCTGCATTAGAGCACTACGTTCTGGCAAGCATGGCCATGTCAGCAAATGGCCAAGAACAAGATGTGGCT TCAGTTGATTCCAGCATAGGTGATGCCTATCTAGCATTGGCACGCTACGATGAGGCGGTGTTCTCTTATCAGAAAGCACT CACTGTGTTCAAATCAACCAAAGGAGAGAACCATCCAAATGTTGCTTCAGTCTATGTAAGGTTAGCTGATTTGTACAACA AAATAGGAAAATTCAAGGATTCAAAATCCTACTGTGAGAATGCACTCAGAATTTTCGGAAAGAGCAAACCAGGAATCCCC CCAGAAGAGATTGCTAATGGTTTAATAGATGTTGCTGCTATCTATCAATCCATGAATGATTTGGAGAAGGGGTTGAAGTT ACTCAAAAAGGCCTTGAAGATATATGGCCATGCTCCTGGTCAACAAAGTACTATTGCAGGGATTGAGGCACAAATGGGGG TTATGTATTACATGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCGTTGCCAAGTTTCGTGCCAGTGGA GAGAAAAAATCTGCTTTGTTTGGGATTGCTTTGAACCAAATGGGTCTTGCATGTGTGCAACGTTATGCTATAAATGAAGC AGCAGATTTGTTTGAAGAGGCCAGGACTATATTGGAGAAAGAGTATGGTCAATATCACCCAGACACCTTAGGGGTTTATA GCAATCTAGCAGGAACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAGATTTTGGAATTTGTGGTTGGAATGAGA GAAGAGAAGCTCGGAACAGCGAACCCCGATGTGGATGACGAGAAACGTAGATTGGCAGAATTGCTGAAAGAAGCAGGCAG GGGTCGGAATAGGAAATCGAAAAGATCATTGGAAACTCTCCTTGATGCCAATTCTCGGCTTATAAAAAACAATAGCATTA AGGTCCTATAA
Protein sequence (LotjaGi2g1v0246500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKHRSLALRGIIEERIATGLDNPDLGPFLLKQTRDMISSGENPQKALDLALRALKSFEMCADGKPSLELVMCLHVLATI YCNLGQYNEAIPILERSIDIPVLEDGQDHALAKFAGCMQLGDTYAMMGNIENSILFYTAGLEIQGQVLGETDPRFGETCR YVAEAHVQALQFDEAERLCQMALEIHRGNGNGSSASVEESADRRLMGLIYDSKGDYEAALEHYVLASMAMSANGQEQDVA SVDSSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPNVASVYVRLADLYNKIGKFKDSKSYCENALRIFGKSKPGIP PEEIANGLIDVAAIYQSMNDLEKGLKLLKKALKIYGHAPGQQSTIAGIEAQMGVMYYMLGNYSDSYNIFKSAVAKFRASG EKKSALFGIALNQMGLACVQRYAINEAADLFEEARTILEKEYGQYHPDTLGVYSNLAGTYDAMGRVDDAIEILEFVVGMR EEKLGTANPDVDDEKRRLAELLKEAGRGRNRKSKRSLETLLDANSRLIKNNSIKVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 535 | 519 | 0.0 | – | |
| PANTHER | 17 | 535 | 519 | 0.0 | – | |
| Gene3D | 38 | 200 | 163 | 2.3E-20 | ||
| SUPERFAMILY | 43 | 144 | 102 | 1.4E-6 | ||
| Pfam | 71 | 100 | 30 | 1.3E-4 | – | |
| ProSiteProfiles | 71 | 104 | 34 | 6.107 | ||
| ProSiteProfiles | 71 | 104 | 34 | 6.97 | ||
| SMART | 71 | 104 | 34 | 34.0 | ||
| SMART | 114 | 147 | 34 | 9.2 | ||
| SUPERFAMILY | 119 | 312 | 194 | 3.54E-19 | ||
| SMART | 156 | 189 | 34 | 14.0 | ||
| ProSiteProfiles | 200 | 483 | 284 | 16.873 | ||
| SMART | 200 | 233 | 34 | 37.0 | ||
| ProSiteProfiles | 200 | 233 | 34 | 5.9 | ||
| Gene3D | 203 | 370 | 168 | 2.5E-29 | ||
| Pfam | 206 | 224 | 19 | 0.16 | ||
| Pfam | 238 | 312 | 75 | 1.3E-11 | – | |
| SMART | 240 | 273 | 34 | 1.5 | ||
| ProSiteProfiles | 240 | 273 | 34 | 9.175 | ||
| ProSiteProfiles | 282 | 315 | 34 | 6.992 | ||
| SMART | 282 | 315 | 34 | 0.023 | ||
| SMART | 325 | 358 | 34 | 11.0 | ||
| ProSiteProfiles | 325 | 358 | 34 | 7.375 | ||
| SUPERFAMILY | 365 | 507 | 143 | 1.42E-15 | ||
| ProSiteProfiles | 366 | 399 | 34 | 6.372 | ||
| SMART | 366 | 399 | 34 | 28.0 | ||
| Gene3D | 371 | 536 | 166 | 1.1E-23 | ||
| ProSiteProfiles | 408 | 441 | 34 | 5.281 | ||
| SMART | 408 | 441 | 34 | 52.0 | ||
| Pfam | 409 | 474 | 66 | 9.8E-9 | – | |
| ProSiteProfiles | 450 | 483 | 34 | 6.549 | ||
| SMART | 450 | 483 | 34 | 74.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0246500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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