Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0260100 |
Transcript ID | LotjaGi2g1v0260100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Reticulon-like protein; TAIR: AT3G10915.2 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72809549..72812580) extracted from Lotus japonicus Gifu genome v1.2.
CCAAATCTAGCAACAACAACACAAAAACAAAAACAGTATTTTGAAATACTTGTCATGTCGGCTAGAACTACTTGACTTGA GTTCTTTGTTTCTATCCAATCATACCGAACCCTATTTTGTTTCGTTCTTGTTCTCATCAATCAATTTTAGGGTTTCACTT TGATTCCCTTTCTCCCTTTCGCTTTGCGTTCTCGCCTCGTCACTGTCGTCCCGTGATTTCCCCTCAGATCTTCGTGGTAG AAACCATGTATTTAGTTCCAAGTTTCAATTTTTTTTTTTCACATATCAGATTTTAGGGTTTTCATGTTTGAATCATTTAA TTGGCAATTGTTTGTTGTAAAATTGCATGGGGGTGCTTATGTTTTGCCTGAATTGGATTTGTGCAAGGTTGTTGTGAACT TGTGATTTGGCACAAGAGATAACTGAATTTTGAACATTGATTTTGATGTTATATACTTGTGAAGTCTGTTGTATGGTAAT TCAGTTAAGTTTGTTGTTATGTATTCAGGTCTGGGCAATCTGGTTGGTAGATTTTCATTTGGAGAGTTAATTTCATGTCT GAGTCAGACACTCAGGTTCCTACTGCCTTTGGTATGTTCCAACTTCCTGATCAGTTTTCGCCAATTGTCTTGTTCATGAT ATGCATTCATTTTAATGGGGTTATATAGAAAGTTAGACACACTCAAACACACTTTAAAGTGTTTTGGATTGAAAAGTGTT TTGGTTGAAAATTGCTTTTGGTTTCTTATGTGAAATCTGATTCAAATAAGCTAAGAAGTCGTTTTTAAATTCTATTTAAA TTTACAAAATTGGAAAATTTTGCTGAAAAGGATCACGCTGCAAGGATGACTTTTTTTTTCTCTTGGATTTAGTATGGTTT AACATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTT GGGTGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATG TCTTGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGGTTTGGCTAGTAACCATTT TCTGCTTGTTTTATGTTTTTGTCATGCTTAACACTAAGTCATTGGTCATCCCTTTCTCTTCATGCAGACAAGCACCAACA TTACCTGAACTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCT TATAGCTCATGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTTAGTTTTGCTTGAGGCTTCTGCGTTTTAG GAATTGTGGCTTTGGGTAACTGCGATCTAAATAATTAGTGATGTAATGGGCTCCGTTAGGCCTTTTTCTAAGGCTTGTTG TTACCTTCTTGAAAGCCCATCTTGGCCTTAAAACCTATTTTATTATGGAGCTTTTAAATAGGCCAACAAGTATATTATTT GAAGATATTGAAGATGATGATGATGATTTTTATTTAAATAGGCGTCCATCAAGCTTAAAACATATTTTGTTGGCCTAAAA GCTTGACTTCTTTATCTAAATAGACTTTTTAAAAAAACATTGACTTAATTTATTTAGTAAGTAGATCTAGTTTGAGCCAA ATGCAAGCTAGGCCTAATGTGGATCAGATTATAGGCCTCTTTTGGGCTTTATGGTCTATTCCCACGTCAGATTTTCTAGA AGGAATGTGCTAGTAAAGTTTAATAGGGATGACATATAACTCGGGATGGGCTTGCGCAATGTGTGAGCTAGTTGTATGTG TATAGGATCTGCTCTGTTGAAGTATTTCCCTCAAATTTATCATTTGTTTTTTCAACAATATCTGGTGGTGACATGTTCTG TTATATTATATATTCAATTCATGGTCTATTACTGTCTTTAAGTTTTATTTTGCTATACATTTAGAAATGGGATCATTATA ATTCTTAATATTGTGCTGAAGAGATACTTCGTTGTCAATTGTCTACTTGACAGGTGGTGGTTTGTTTGTGGCTCTTGTCT GTCATTGGCAGCTACTTCTCCTTCTTCACACTCGCATATATCGGTATGCTTACATCGTCCATCCTATTAAAATATAAAAG CAGTTTGTGATGTCTGTAATCGGTACCTCCTTTCTCACTAATGTGTAGTATATTCTGCACTAAATCTTTTTTATGTTATT TTCTTGAACCTTTGACCTTCCTATCAATATTCTTCTATTGTTTGGCTTGTCATGAGTCACCATAGCAGTCATCTGTGTCC AACTCTACAATGTAACCCCTCTCAATAGTTTCATTGCATCTTCATGCTTTCCTGATTGTATGTTTGCACACACATGATCC TGTGCTTTTAATTTAGGTCACATGCTTTGTCACTAGTTCTAACTTCTAATTGACATCTCAATCTAGCGTGTTATGTGCTG TTAAGAATCATTTTGGCAGCTGGCTTTTGTGAAAAGCATTTGTAAAGCTATTGTAATTTTTTAACTTACATTCTTGCTCT TCAATGTTGACAGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAATTATGTAGATAAATGTTG TGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAGACTGCCCCATAATGTAT CAAAAGACAAAGAGTCTTGATTTCCAAGGCCTTCCTATTTATGTTTCATGTGTGTAAAGTAACTCTGCCTTCTTATTGTT GAGCTATTTAGCATCTTGCTAGCACTTTGCCTCGTACATTTAGGGGGCAATTTTGTAGTTTAGATGTTGCTCGAGCTAAC TGCGGCAGCTGTTTTATGCTCTGCGCTTCTAAATTGAGAATTGACTGAGTTTGAGGATTTTTGAGAATTGAGAATTTAAT TTGAATTAAACTTTATATATCTAAAAATATTACTTATACTTAAATATTTATTTTAGTATATTTTCCGATGTA
CDS sequence (LotjaGi2g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGTCAGACACTCAGGTTCCTACTGCCTTTGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGACAAGCACCAACATTACCTGAA CTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTATAGCTCA TGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTCATTGGCAGCT ACTTCTCCTTCTTCACACTCGCATATATCGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAAT TATGTAGATAAATGTTGTGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAG ACTGCCCCATAATGTATCAAAAGACAAAGAGTCTTGA
Protein sequence (LotjaGi2g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSESDTQVPTAFVADVILWKRWPVSLGVILVATVAWILLEWTGLPFLTICSDVLLILIVLLFLHANYAAFRNRQAPTLPE LVVSEEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIGSLMMITIPALYRKYGN YVDKCCGILHHQFSKHYRIVDESVFNRLPHNVSKDKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 20 | 20 | - | – | |
PANTHER | 8 | 198 | 191 | 9.4E-99 | – | |
PANTHER | 8 | 198 | 191 | 9.4E-99 | – | |
Pfam | 13 | 166 | 154 | 4.3E-46 | ||
ProSiteProfiles | 13 | 198 | 186 | 30.172 | ||
TMHMM | 17 | 39 | 23 | - | – | |
Phobius | 21 | 39 | 19 | - | – | |
Phobius | 40 | 44 | 5 | - | – | |
TMHMM | 43 | 65 | 23 | - | – | |
Phobius | 45 | 63 | 19 | - | – | |
Phobius | 64 | 116 | 53 | - | – | |
Phobius | 117 | 143 | 27 | - | – | |
TMHMM | 122 | 144 | 23 | - | – | |
Phobius | 144 | 198 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0260100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…