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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260100 |
| Transcript ID | LotjaGi2g1v0260100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G10915.3 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72809841..72811697) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGGTTTGGCTAGTAACCATTTTCT GCTTGTTTTATGTTTTTGTCATGCTTAACACTAAGTCATTGGTCATCCCTTTCTCTTCATGCAGACAAGCACCAACATTA CCTGAACTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTAT AGCTCATGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTTAGTTTTGCTTGAGGCTTCTGCGTTTTAGGAA TTGTGGCTTTGGGTAACTGCGATCTAAATAATTAGTGATGTAATGGGCTCCGTTAGGCCTTTTTCTAAGGCTTGTTGTTA CCTTCTTGAAAGCCCATCTTGGCCTTAAAACCTATTTTATTATGGAGCTTTTAAATAGGCCAACAAGTATATTATTTGAA GATATTGAAGATGATGATGATGATTTTTATTTAAATAGGCGTCCATCAAGCTTAAAACATATTTTGTTGGCCTAAAAGCT TGACTTCTTTATCTAAATAGACTTTTTAAAAAAACATTGACTTAATTTATTTAGTAAGTAGATCTAGTTTGAGCCAAATG CAAGCTAGGCCTAATGTGGATCAGATTATAGGCCTCTTTTGGGCTTTATGGTCTATTCCCACGTCAGATTTTCTAGAAGG AATGTGCTAGTAAAGTTTAATAGGGATGACATATAACTCGGGATGGGCTTGCGCAATGTGTGAGCTAGTTGTATGTGTAT AGGATCTGCTCTGTTGAAGTATTTCCCTCAAATTTATCATTTGTTTTTTCAACAATATCTGGTGGTGACATGTTCTGTTA TATTATATATTCAATTCATGGTCTATTACTGTCTTTAAGTTTTATTTTGCTATACATTTAGAAATGGGATCATTATAATT CTTAATATTGTGCTGAAGAGATACTTCGTTGTCAATTGTCTACTTGACAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTC ATTGGCAGCTACTTCTCCTTCTTCACACTCGCATATATCGGTATGCTTACATCGTCCATCCTATTAAAATATAAAAGCAG TTTGTGATGTCTGTAATCGGTACCTCCTTTCTCACTAATGTGTAGTATATTCTGCACTAAATCTTTTTTATGTTATTTTC TTGAACCTTTGACCTTCCTATCAATATTCTTCTATTGTTTGGCTTGTCATGAGTCACCATAGCAGTCATCTGTGTCCAAC TCTACAATGTAACCCCTCTCAATAGTTTCATTGCATCTTCATGCTTTCCTGATTGTATGTTTGCACACACATGATCCTGT GCTTTTAATTTAGGTCACATGCTTTGTCACTAGTTCTAACTTCTAATTGACATCTCAATCTAGCGTGTTATGTGCTGTTA AGAATCATTTTGGCAGCTGGCTTTTGTGAAAAGCATTTGTAAAGCTATTGTAATTTTTTAACTTACATTCTTGCTCTTCA ATGTTGACAGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAATTATGTAGATAAATGTTGTGG AATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAGACTGCCCCATAATGTATCAA AAGACAAAGAGTCTTGA
CDS sequence (LotjaGi2g1v0260100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGCAGACAAGCACCAACATTACCT GAACTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTATAGC TCATGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTCATTGGCA GCTACTTCTCCTTCTTCACACTCGCATATATCGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGA AATTATGTAGATAAATGTTGTGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAA CAGACTGCCCCATAATGTATCAAAAGACAAAGAGTCTTGA
Protein sequence (LotjaGi2g1v0260100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLSLLSFVSIVVADVILWKRWPVSLGVILVATVAWILLEWTGLPFLTICSDVLLILIVLLFLHANYAAFRNSRQAPTLP ELVVSEEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIGSLMMITIPALYRKYG NYVDKCCGILHHQFSKHYRIVDESVFNRLPHNVSKDKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| PANTHER | 12 | 199 | 188 | 2.0E-95 | – | |
| PANTHER | 12 | 199 | 188 | 2.0E-95 | – | |
| Pfam | 13 | 167 | 155 | 3.3E-45 | ||
| ProSiteProfiles | 13 | 199 | 187 | 29.589 | ||
| Phobius | 15 | 23 | 9 | - | – | |
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 24 | 41 | 18 | - | – | |
| Phobius | 42 | 52 | 11 | - | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 53 | 70 | 18 | - | – | |
| Phobius | 71 | 117 | 47 | - | – | |
| Phobius | 118 | 144 | 27 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| Phobius | 145 | 199 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0260100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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