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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260100 |
| Transcript ID | LotjaGi2g1v0260100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G10915.2 Reticulon family protein; Swiss-Prot: sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16; TrEMBL-Plants: tr|I3SEB5|I3SEB5_LOTJA Reticulon-like protein; Found in the gene: LotjaGi2g1v0260100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72809549..72812580) extracted from Lotus japonicus Gifu genome v1.2.
CCAAATCTAGCAACAACAACACAAAAACAAAAACAGTATTTTGAAATACTTGTCATGTCGGCTAGAACTACTTGACTTGA GTTCTTTGTTTCTATCCAATCATACCGAACCCTATTTTGTTTCGTTCTTGTTCTCATCAATCAATTTTAGGGTTTCACTT TGATTCCCTTTCTCCCTTTCGCTTTGCGTTCTCGCCTCGTCACTGTCGTCCCGTGATTTCCCCTCAGATCTTCGTGGTAG AAACCATGTATTTAGTTCCAAGTTTCAATTTTTTTTTTTCACATATCAGATTTTAGGGTTTTCATGTTTGAATCATTTAA TTGGCAATTGTTTGTTGTAAAATTGCATGGGGGTGCTTATGTTTTGCCTGAATTGGATTTGTGCAAGGTTGTTGTGAACT TGTGATTTGGCACAAGAGATAACTGAATTTTGAACATTGATTTTGATGTTATATACTTGTGAAGTCTGTTGTATGGTAAT TCAGTTAAGTTTGTTGTTATGTATTCAGGTCTGGGCAATCTGGTTGGTAGATTTTCATTTGGAGAGTTAATTTCATGTCT GAGTCAGACACTCAGGTTCCTACTGCCTTTGGTATGTTCCAACTTCCTGATCAGTTTTCGCCAATTGTCTTGTTCATGAT ATGCATTCATTTTAATGGGGTTATATAGAAAGTTAGACACACTCAAACACACTTTAAAGTGTTTTGGATTGAAAAGTGTT TTGGTTGAAAATTGCTTTTGGTTTCTTATGTGAAATCTGATTCAAATAAGCTAAGAAGTCGTTTTTAAATTCTATTTAAA TTTACAAAATTGGAAAATTTTGCTGAAAAGGATCACGCTGCAAGGATGACTTTTTTTTTCTCTTGGATTTAGTATGGTTT AACATGTTCTTATCTTTGCTCTCCTTTGTCTCTATTGTAGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTT GGGTGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATG TCTTGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGGTTTGGCTAGTAACCATTT TCTGCTTGTTTTATGTTTTTGTCATGCTTAACACTAAGTCATTGGTCATCCCTTTCTCTTCATGCAGACAAGCACCAACA TTACCTGAACTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCT TATAGCTCATGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTTAGTTTTGCTTGAGGCTTCTGCGTTTTAG GAATTGTGGCTTTGGGTAACTGCGATCTAAATAATTAGTGATGTAATGGGCTCCGTTAGGCCTTTTTCTAAGGCTTGTTG TTACCTTCTTGAAAGCCCATCTTGGCCTTAAAACCTATTTTATTATGGAGCTTTTAAATAGGCCAACAAGTATATTATTT GAAGATATTGAAGATGATGATGATGATTTTTATTTAAATAGGCGTCCATCAAGCTTAAAACATATTTTGTTGGCCTAAAA GCTTGACTTCTTTATCTAAATAGACTTTTTAAAAAAACATTGACTTAATTTATTTAGTAAGTAGATCTAGTTTGAGCCAA ATGCAAGCTAGGCCTAATGTGGATCAGATTATAGGCCTCTTTTGGGCTTTATGGTCTATTCCCACGTCAGATTTTCTAGA AGGAATGTGCTAGTAAAGTTTAATAGGGATGACATATAACTCGGGATGGGCTTGCGCAATGTGTGAGCTAGTTGTATGTG TATAGGATCTGCTCTGTTGAAGTATTTCCCTCAAATTTATCATTTGTTTTTTCAACAATATCTGGTGGTGACATGTTCTG TTATATTATATATTCAATTCATGGTCTATTACTGTCTTTAAGTTTTATTTTGCTATACATTTAGAAATGGGATCATTATA ATTCTTAATATTGTGCTGAAGAGATACTTCGTTGTCAATTGTCTACTTGACAGGTGGTGGTTTGTTTGTGGCTCTTGTCT GTCATTGGCAGCTACTTCTCCTTCTTCACACTCGCATATATCGGTATGCTTACATCGTCCATCCTATTAAAATATAAAAG CAGTTTGTGATGTCTGTAATCGGTACCTCCTTTCTCACTAATGTGTAGTATATTCTGCACTAAATCTTTTTTATGTTATT TTCTTGAACCTTTGACCTTCCTATCAATATTCTTCTATTGTTTGGCTTGTCATGAGTCACCATAGCAGTCATCTGTGTCC AACTCTACAATGTAACCCCTCTCAATAGTTTCATTGCATCTTCATGCTTTCCTGATTGTATGTTTGCACACACATGATCC TGTGCTTTTAATTTAGGTCACATGCTTTGTCACTAGTTCTAACTTCTAATTGACATCTCAATCTAGCGTGTTATGTGCTG TTAAGAATCATTTTGGCAGCTGGCTTTTGTGAAAAGCATTTGTAAAGCTATTGTAATTTTTTAACTTACATTCTTGCTCT TCAATGTTGACAGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAATTATGTAGATAAATGTTG TGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAGACTGCCCCATAATGTAT CAAAAGACAAAGAGTCTTGATTTCCAAGGCCTTCCTATTTATGTTTCATGTGTGTAAAGTAACTCTGCCTTCTTATTGTT GAGCTATTTAGCATCTTGCTAGCACTTTGCCTCGTACATTTAGGGGGCAATTTTGTAGTTTAGATGTTGCTCGAGCTAAC TGCGGCAGCTGTTTTATGCTCTGCGCTTCTAAATTGAGAATTGACTGAGTTTGAGGATTTTTGAGAATTGAGAATTTAAT TTGAATTAAACTTTATATATCTAAAAATATTACTTATACTTAAATATTTATTTTAGTATATTTTCCGATGTA
CDS sequence (LotjaGi2g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGTCAGACACTCAGGTTCCTACTGCCTTTGTTGCTGATGTTATACTGTGGAAACGGTGGCCTGTTTCCTTGGG TGTCATTCTTGTTGCAACAGTTGCCTGGATCCTGCTAGAGTGGACTGGTTTACCATTTTTAACGATTTGTTCAGATGTCT TGCTGATTTTGATCGTACTATTGTTTCTGCATGCTAACTATGCTGCCTTTAGAAATAGACAAGCACCAACATTACCTGAA CTAGTTGTGTCAGAGGAGATGGTTAATAATGTAGCAGCTTCGTTTCGGGTCAAAATCAATAATGTGCTCCTTATAGCTCA TGACATCACTATTGGCAAAGATTTTAGAGTATTTTTTAAGGTGGTGGTTTGTTTGTGGCTCTTGTCTGTCATTGGCAGCT ACTTCTCCTTCTTCACACTCGCATATATCGGATCCCTCATGATGATTACGATCCCCGCGCTGTACAGGAAATATGGAAAT TATGTAGATAAATGTTGTGGAATTTTACACCACCAATTTTCAAAACATTATAGAATAGTAGATGAAAGTGTTTTCAACAG ACTGCCCCATAATGTATCAAAAGACAAAGAGTCTTGA
Protein sequence (LotjaGi2g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSESDTQVPTAFVADVILWKRWPVSLGVILVATVAWILLEWTGLPFLTICSDVLLILIVLLFLHANYAAFRNRQAPTLPE LVVSEEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIGSLMMITIPALYRKYGN YVDKCCGILHHQFSKHYRIVDESVFNRLPHNVSKDKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 8 | 198 | 191 | 9.4E-99 | – | |
| PANTHER | 8 | 198 | 191 | 9.4E-99 | – | |
| Pfam | 13 | 166 | 154 | 4.3E-46 | ||
| ProSiteProfiles | 13 | 198 | 186 | 30.172 | ||
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 21 | 39 | 19 | - | – | |
| Phobius | 40 | 44 | 5 | - | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 45 | 63 | 19 | - | – | |
| Phobius | 64 | 116 | 53 | - | – | |
| Phobius | 117 | 143 | 27 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 144 | 198 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0260100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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