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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0273100 |
| Transcript ID | LotjaGi2g1v0273100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G22960.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960, mitochondrial; TrEMBL-Plants: tr|A0A151R330|A0A151R330_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0273100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74394924..74399536) extracted from Lotus japonicus Gifu genome v1.2.
CAACAAGAAAAGTGAGCATTTAACCAAAAGAAGAAAAAACTTGACAAGGATATAGGCACAACGTGTTCGGGTTGTAAAAG AGGCTCCGAAAATGCCACGGGTGCGGGTGTTTCACTCGTTTTTTCCACTCCCACACCAAACCCATCACAACACCCTAAAA CCTGCACCACCGTCCCCGCCACTCAGCCGCCGTTGATTGATGGCATCGCCGCCACCACCGCCCAATCAATGACCCTCTCT TTCAGATTCTTCTCCACTCCAGCAGCCACAGCCCTCAAATCTCGCTTCCTCTTCTCCTTCAGCACATGCTCCTCAACCCA CCACGACGCCGTTTCACGCCCTTCCCCCGTTTCCGATCACTTGCGCGCCGCGGTTTCCCAGCCTGAGCTTCTCGTCCGGG TCCTCCACTCGGTCCGAACCCGACCCGGAACTGCTCTCAGATTCTTCCGTTGGGTCGAGAGGCAACCCGGGTTTACTGGG TCTGAATCGGCGTTCGCCGCCATCCTCGATATTCTCGCCAGGAACGGTTGGATGAGGTCTGCGTATTGGGTCATGGAGAA GAATGTGGTTGCTGTGAAAATGGAGGATGCTGTCATGGATGTTTTGGTTAGTGGTTCTTCTTCTTCTTCTTCTTCTTCTT CGGTTAAGCTTCTTGATTTGTTGCTTTTTATTCTGTCGAAAAAATCGATGCTCGAGAAGTGTTTGTTGGTTTTCTACAAG ATGATTCATAATGGGTTGTTACCTGGTGTGAGGAATTGCAATAGGGTTCTTAGGATGCTTAGGGATAGGAACATGGTGAA TGAAGCTAGTGAGGTTTTTAATGTGATGATTGAGTGTGGGATAAGACCTACCACTGTTACTTATAACACCTTGATGGATT CGTTTTGCAAGGAAGGGGAGGTTCAGCGCGCGGTTGAGCTTCTCACTCGAATGCGGCTAACCAGGTGTGCTCCCGATGAT GTGACGTATAATATTTTGGTGAATGGTTGGTCTAACAAAGGGGAGTTGGAGCAGGCGAGGAAACTGATTGAGGAGATGTT GAAATTGGGGCTGAAGGTTTCGGCTTACACGTATAACCCGCTGATTCGCGGGTATCGTGAGAAAGGGCTGCATGAGGAAG CAGCGGATGTATGGGAGATGTTGGATAGAGAAGCTTTGTCTACTGTGGCGACCTACAATACGATTATGTGTGGTCTTTGC AAGTGTGGAAGGGTGAGTGATGCAAGGCCGCTGTTAGATGATATGATGAATAAAAATGTGATGCCGGACTTGGTTTCCTA TAATACTCTAATTTATGGTTACAGCAGGTTGGGCAACATGGGGGAGGCTTTTCACTTGTTTGATGAGTTGAGATATAGAA GTCTTGTTCCCACTGTTGTGACCTATAATACGCTTATAGACGGTCTTTGCAGATTGGGGGACATGGATAAAGCCAGGCGG TTAAAAGATGATATGATCAGACACGGACCTCATCCTGATGTATTTACTTTTACAACTCTTGTCAGAGGATTTTGCATCAC GGGGAACTTACCAATGGCTAAGGAGCTATTTGAAGAGATGCTTCATAGAGGATTGCAGCCAGATCGTCTTGCATACACAA CTCGGATAGTGGGTGAACTGAAACTTGGTGACCCATTTAAGGCTTTTGGTATGCAGGAAGAAATGCTTGCCAACTTTCCT CCTGATTTGATCGTATATAATATCTTCATCGATGGGCTTTATAAATTGGGCAATTTGAAAGAAGCCAATGAACTTGTGCA TAAAATGCTCCACGAAGGACTTGTTCCAGATCATGTAACATATACTAGCAACATCCATGCTCACTTGATGGCTGGGCATC TTAGGAAGGCTAGTGCGGTGTTCCGTATGATGTTGGAGAAAGGGATATTACCTTCAGTTGTTACTTATACAGTTTTGATT CATTCATATGCAGTTAGGGGCAGGCTGCAACTTGCTCTTAAGTACTTTTTTGAGATGCAAGAGAAGGGTGTTGATCCAAA TGTGATCACCTACAATGCTTTAATCAATGGATTTTGCAAAGTGAGAAAAATGGATCTGGCATACAGTTTTTTTGCGGAAA TGCAAGCAAAGGGTATTTATGCAAATAAGTACACCTACACCATTTTAATAAATGAGAACTGCAACTTAGGCCGATGGCAG GAGGCTTTGAGGTTGTATAGGGAAATGCGAGATAGAGAAATTGAACCTGATTCTTGCACACATAGTGCACTATTGTTGAA GCATCTAAACAAAGACTATAAATTCCATGCACTTCAGCATCTTGAGAGTGTAATTGGAGGTGGTGAATAAACTTATGATG TAAAGGTGAAGGAATGATTATTTGTTATTCTGGTTTTGGCATTCCCATATGACTGATGACATCCCTACATTTGGATGGGT TTTTGCCTCGTTGAGGTGTGAAGTTCCTGAGACATAATCGTGTATATTTATGTGTCTGTCATGGTAAGAATTCCCTTTTT TTCCTTAGATACTTGATACCTCCTGTAACCATTATATTCCTCTGGCCTTGATACATTTTCGATTTGTTTACAGGATAAGA TGCCAATGGTTGTTTCTGATGATTGATGGCCAAACTTCAACTGTTCAAATGTTTTCACACGTTAAATACTCTGTCTGGTT AATACTTGGAAGAGTGTGGATCAACAAAGATTCAGAGATATGTCACATTAATGACATTATGCATAGAAGGCTAGTGGTAT ACAGATTAAACTCACTCCTCTGTCAAAATATTTTAAATTAATTTTTGACATAGACCCCTTCCCAGACCCGTGTATGCAGA AGCTTTGTGCACCGGGCTGCCCTTTTTTGACATAATCATACCCCATTATTTTAATTCATTTTTCATAGTCCTCTTGGGGA AGAGTTTTTTTTTTTTACAATGGTGCTTATTCTTTGCATGATAATTGTGATTATCATTTGTAAGCCTAGTGATACACATT TTGTATCCATCAAAACTTGTATAATGCTTGGAATAAAAAGTTAGATCCCTTCTGTGCTCTGTTGTCATTGAATGCACAAC AAACTTATATTCATTAGTAAACTTATTATGGCTTAAATATGTTATTAGTCCCTATATTTGTATGGCTTTGTTATCTTAGT CCCTAACAACTTTTCTTTATAGTCCTTGTCCCTAATTGTTTCAAAGGAATGTTTTAGTTCCTCATCATACTAAACCTTTG TTAAATAGTGACATGGCTAACTGAGTTGCCTATCATACTTGCCAACACGTCCATAATAATCCACATAGGATATTGGAACT GCTCTCATCTTACACATGTCATCAAAGAGCAGGGCACTTCTCACATGATTTGGGTGTCTTCTTCAATCTATAGAAATAGA AACCTTTTGATATTGATGCGGATTTGAATTAATATATGGATGCTGATTTGATTTGTTTTTATTTTTCTTATTTGTTTCAG TAATATGCAGATTTGATTTGTTAGGTTAATTTAGGATTTTTCTATTTTTATTATTATATCTTTATTAGTTTGGATTGGAT TGTCCGGGGACATATGGGTTGGGGAGGGGAAGGGATCAATCCCTGGAGTGTAATTTATCTTCCCGATGTACCAAAAAAAA GTTAGGATTGGATTGTTTTCTTTATTAGATAGAATATAATTGTTTCTTATCTTATTGGATAAGATCTTAGGATCTTTTTC CTTTAATTGGATAGGATTCTAGTTTCCCCATTTCCTTGTACTCAACCCTTGTGAAAAGGAGATTTCAGAATTGAATAAAA TCAATCAAGAATTTCTAAAAAATTGTGTGCAACTAAAAAGGGCTTTGTCAAGGATGATTTGCTTCTCTTATTCAAAGTAG GTCGCAAGAAGGATACCTCTGTGTCCAAACCTGTGACTGGATCCTCCGCTAAGGTTCATAACACCTTTCCGCGCCATACA TATTTGTGTAGGAAGCAAGACATTCTCAGGTACACCATCAACTTTAAGCAAGAGGGTGTGTGTGTTTTGAATGGGTTGAG AAGGAGCGTTATCATGTTCTAATGTTGCGGTTTAAAATTGGGGAGATGCATACAAAAGAAACTCACAAACTAGAGAGAAA ATGTGAACCTTGTTTTACAGTTAGTTGCTCAATCACTTAATTTTCATCAGGAGGTTGCTATATATTGGGTCCTTCAAGTT ATAATTGTGTCCTAAACATGGATTTGTATTGTTGATGAAAATTGCCCATCATTAGTAGTGAGAAGTGGAAGTTTGTAACT TTTTTCTAGTTTGTGAAATTGAAGCTTAATAAACTGTATTATTTGTTTATTTTAACCTATCAGAGCTCATCACTTGCAGG ATTCTGGACTTTTATAGATCCATTGACAACATTAGAGAAATTTTCCAATTTAATGTTGCTTGAGTTATCAAACTTGAGAT TTCAAATTGCACTATGTAATAAATTAGCTATGCAGCAATTATATTACTTTTAACTAGTATGTCTGTCCATGTAATGGCAG TAAATGCTTAAGAATGGTATGTACATGGAATTGAATAGGGTAACATGATATTCATTCAACGACAATGTTTGGTGGAAGTT GATGGTCTCATTATAATGATCATATTTAAGCAGTCTTCCAGTTTTATGTCCCC
CDS sequence (LotjaGi2g1v0273100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCTCTCTTTCAGATTCTTCTCCACTCCAGCAGCCACAGCCCTCAAATCTCGCTTCCTCTTCTCCTTCAGCACATG CTCCTCAACCCACCACGACGCCGTTTCACGCCCTTCCCCCGTTTCCGATCACTTGCGCGCCGCGGTTTCCCAGCCTGAGC TTCTCGTCCGGGTCCTCCACTCGGTCCGAACCCGACCCGGAACTGCTCTCAGATTCTTCCGTTGGGTCGAGAGGCAACCC GGGTTTACTGGGTCTGAATCGGCGTTCGCCGCCATCCTCGATATTCTCGCCAGGAACGGTTGGATGAGGTCTGCGTATTG GGTCATGGAGAAGAATGTGGTTGCTGTGAAAATGGAGGATGCTGTCATGGATGTTTTGGAAGGGGAGGTTCAGCGCGCGG TTGAGCTTCTCACTCGAATGCGGCTAACCAGGTGTGCTCCCGATGATGTGACGTATAATATTTTGGTGAATGGTTGGTCT AACAAAGGGGAGTTGGAGCAGGCGAGGAAACTGATTGAGGAGATGTTGAAATTGGGGCTGAAGGTTTCGGCTTACACGTA TAACCCGCTGATTCGCGGGTATCGTGAGAAAGGGCTGCATGAGGAAGCAGCGGATGTATGGGAGATGTTGGATAGAGAAG CTTTGTCTACTGTGGCGACCTACAATACGATTATGTGTGGTCTTTGCAAGTGTGGAAGGGTGAGTGATGCAAGGCCGCTG TTAGATGATATGATGAATAAAAATGTGATGCCGGACTTGGTTTCCTATAATACTCTAATTTATGGTTACAGCAGGTTGGG CAACATGGGGGAGGCTTTTCACTTGTTTGATGAGTTGAGATATAGAAGTCTTGTTCCCACTGTTGTGACCTATAATACGC TTATAGACGGTCTTTGCAGATTGGGGGACATGGATAAAGCCAGGCGGTTAAAAGATGATATGATCAGACACGGACCTCAT CCTGATGTATTTACTTTTACAACTCTTGTCAGAGGATTTTGCATCACGGGGAACTTACCAATGGCTAAGGAGCTATTTGA AGAGATGCTTCATAGAGGATTGCAGCCAGATCGTCTTGCATACACAACTCGGATAGTGGGTGAACTGAAACTTGGTGACC CATTTAAGGCTTTTGGTATGCAGGAAGAAATGCTTGCCAACTTTCCTCCTGATTTGATCGTATATAATATCTTCATCGAT GGGCTTTATAAATTGGGCAATTTGAAAGAAGCCAATGAACTTGTGCATAAAATGCTCCACGAAGGACTTGTTCCAGATCA TGTAACATATACTAGCAACATCCATGCTCACTTGATGGCTGGGCATCTTAGGAAGGCTAGTGCGGTGTTCCGTATGATGT TGGAGAAAGGGATATTACCTTCAGTTGTTACTTATACAGTTTTGATTCATTCATATGCAGTTAGGGGCAGGCTGCAACTT GCTCTTAAGTACTTTTTTGAGATGCAAGAGAAGGGTGTTGATCCAAATGTGATCACCTACAATGCTTTAATCAATGGATT TTGCAAAGTGAGAAAAATGGATCTGGCATACAGTTTTTTTGCGGAAATGCAAGCAAAGGGTATTTATGCAAATAAGTACA CCTACACCATTTTAATAAATGAGAACTGCAACTTAGGCCGATGGCAGGAGGCTTTGAGGTTGTATAGGGAAATGCGAGAT AGAGAAATTGAACCTGATTCTTGCACACATAGTGCACTATTGTTGAAGCATCTAAACAAAGACTATAAATTCCATGCACT TCAGCATCTTGAGAGTGTAATTGGAGGTGGTGAATAA
Protein sequence (LotjaGi2g1v0273100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLSFRFFSTPAATALKSRFLFSFSTCSSTHHDAVSRPSPVSDHLRAAVSQPELLVRVLHSVRTRPGTALRFFRWVERQP GFTGSESAFAAILDILARNGWMRSAYWVMEKNVVAVKMEDAVMDVLEGEVQRAVELLTRMRLTRCAPDDVTYNILVNGWS NKGELEQARKLIEEMLKLGLKVSAYTYNPLIRGYREKGLHEEAADVWEMLDREALSTVATYNTIMCGLCKCGRVSDARPL LDDMMNKNVMPDLVSYNTLIYGYSRLGNMGEAFHLFDELRYRSLVPTVVTYNTLIDGLCRLGDMDKARRLKDDMIRHGPH PDVFTFTTLVRGFCITGNLPMAKELFEEMLHRGLQPDRLAYTTRIVGELKLGDPFKAFGMQEEMLANFPPDLIVYNIFID GLYKLGNLKEANELVHKMLHEGLVPDHVTYTSNIHAHLMAGHLRKASAVFRMMLEKGILPSVVTYTVLIHSYAVRGRLQL ALKYFFEMQEKGVDPNVITYNALINGFCKVRKMDLAYSFFAEMQAKGIYANKYTYTILINENCNLGRWQEALRLYREMRD REIEPDSCTHSALLLKHLNKDYKFHALQHLESVIGGGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Gene3D | 59 | 245 | 187 | 3.8E-33 | ||
| ProSiteProfiles | 85 | 120 | 36 | 5.36 | ||
| PANTHER | 127 | 231 | 105 | 8.2E-121 | – | |
| PANTHER | 127 | 231 | 105 | 8.2E-121 | – | |
| Pfam | 147 | 194 | 48 | 6.9E-13 | ||
| ProSiteProfiles | 148 | 182 | 35 | 11.992 | ||
| TIGRFAM | 150 | 183 | 34 | 2.0E-6 | ||
| SUPERFAMILY | 152 | 557 | 406 | 2.62E-7 | ||
| ProSiteProfiles | 183 | 213 | 31 | 8.857 | ||
| TIGRFAM | 185 | 210 | 26 | 0.001 | ||
| PANTHER | 210 | 363 | 154 | 8.2E-121 | – | |
| PANTHER | 210 | 363 | 154 | 8.2E-121 | – | |
| ProSiteProfiles | 217 | 251 | 35 | 12.211 | ||
| Pfam | 218 | 254 | 37 | 3.8E-9 | ||
| TIGRFAM | 220 | 252 | 33 | 7.6E-8 | ||
| Gene3D | 246 | 317 | 72 | 4.3E-23 | ||
| ProSiteProfiles | 252 | 286 | 35 | 12.244 | ||
| TIGRFAM | 254 | 287 | 34 | 4.4E-7 | ||
| Pfam | 286 | 334 | 49 | 1.4E-17 | ||
| ProSiteProfiles | 287 | 321 | 35 | 13.197 | ||
| TIGRFAM | 289 | 323 | 35 | 2.0E-10 | ||
| PANTHER | 321 | 535 | 215 | 8.2E-121 | – | |
| PANTHER | 321 | 535 | 215 | 8.2E-121 | – | |
| ProSiteProfiles | 322 | 356 | 35 | 12.781 | ||
| TIGRFAM | 324 | 357 | 34 | 3.4E-7 | ||
| Gene3D | 336 | 456 | 121 | 8.2E-28 | ||
| ProSiteProfiles | 357 | 387 | 31 | 5.568 | ||
| Pfam | 388 | 418 | 31 | 6.3E-6 | ||
| ProSiteProfiles | 391 | 425 | 35 | 11.652 | ||
| TIGRFAM | 393 | 426 | 34 | 2.5E-7 | ||
| Pfam | 425 | 473 | 49 | 2.5E-11 | ||
| ProSiteProfiles | 426 | 460 | 35 | 10.665 | ||
| TIGRFAM | 428 | 461 | 34 | 3.4E-5 | ||
| ProSiteProfiles | 461 | 495 | 35 | 12.036 | ||
| TIGRFAM | 463 | 497 | 35 | 3.1E-8 | ||
| Gene3D | 468 | 590 | 123 | 1.0E-33 | ||
| Pfam | 495 | 544 | 50 | 4.6E-18 | ||
| ProSiteProfiles | 496 | 530 | 35 | 12.474 | ||
| TIGRFAM | 498 | 531 | 34 | 2.2E-9 | ||
| ProSiteProfiles | 531 | 565 | 35 | 12.715 | ||
| TIGRFAM | 533 | 567 | 35 | 6.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0273100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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