Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0309300 |
| Transcript ID | LotjaGi2g1v0309300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT1G27060.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|I1J5K0|I1J5K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0309300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78386279..78388799) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAACCAGTCAACAGAACACAAAGTGAGTTAACCAGAGTGATGGAAGAACATGAACAGTGGGAGAAACCAGACAAC GAAGACGACAAGCATCAACCAGAACAACGAATATGGAGTTGGGGTGCAGGAACAGAGGGCCAGTTAGGAACAGGGAAGCT TCAAGACGAGCACCACCCTCAACTCCTTCACCAACCCTCTCTGTCTTCCATCTCCTCCCTTGCATGTGGCGGCGCTCATG TCGTCGCCTTGACTTCCGACGGGAAGGTACTGTCATGGGGTAGAGGCAGTTCTGGTCAACTAGGCCATGGAGAGGTTGTT AATAACGCCTTGGAACCAAAAATTGTAACATCATTGGATGGTTACTTCATAACCCATGTTTCTGCTGGTTGGAGTCACTC TGGTTTTGTTTCAGGTTTGTCAAAGCAATACTCGAGGTTTGTTGTGTTGAATGTTTTTTAATTTTTTTGCCTTTTTGATT AGTGATTGGTTGGTTTTCAGATACTGGGTGTTTGTTCACTTGTGGGGATGGTTCGTTTGGTCAACTTGGGCATGGGGATT ATGCATCACAGTGCTTTCCTGTGAGAGTTTCATGTTTTGTTGATCAGCATGTTGTGAAGGTAGCTTGTGGTATGAGACAT TCCCTTGTTTTGCTGAAAGGTATTGGATTGGTTGAACTTGAAGTTGTTGCCTGGACTAGTTCAGTTTCTGTTTCAGTAGG AATCAAGTTTTTGACAAAAGTTGTTGAGTTGCAGATTGTCCATTGAATCAAGTTTATGGATTTGGCTCTGGAAAGCGTGG TCAATTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGATTTGAAGATGTGCAGATAG TTGAAATTGCTACAAATGGTGATCATAGTGCTGCACTATCTGGTAAATCCCTACCATACTTTCCCCTTGCAGAACATGTG AATCAGATGAACTAAATAGTTCCATTGTATTCTTCCTCTCTTTTTTTTTTTGGTTGGTTGCTATTTCATCAGTTGATGGG CATCTTTACACCTGGGGAAGAGGCTTCAAAGGCTGTGAAGATTCTCATTTTCCACAATGTTTAGACTCTACAATGAGTTT TACCAAAGCCACTTTGGGATGGAACCATGGTTTAGCTATGACTGGTATTTACCAACACTTTATACTAGGATTCTTATGAT CCCCTCCCTCACTTTCATCACTTCCCTATTTAAGAAGTGTACATTTTGTTATCAATTTTGTGTATAGGTGAGGGTGAGGT TTATATGCTTGGTGGCAACCACCTTGGAATGCTTAGTGATATTCAGAATGTGAGCTCAGCTAAGCAGTTACCTGGTAATA CATTTATTAAAGACATCACAATTTATTTTATAGACTCTGTTGTTGCCTCCATCTCCAATCGTTATGAATATCGGCAATTT CAATATATTTGTGAAAAAAAAAAATATTACACTGCATAAATTCCAAAGGTAAATTATTAGTATATAGGAAACGTGTAAAA TATTTTAAATAGCATCACCCTTATCTTTATTATGCATTGTCATTCTGTAGTAGATTCAAGAGAAGCCAATTTGGATAAAG TCCTTGGCCTTGAAGGGGCAAAGGTTGTTGATATTGCTACGGGAGCTGAACATTCCATCCTTGTCACAGGCAATGTGTAG TTCTCTTCTTGTTCTTGAGCAATTTTACAATGACATTAACATGCTGACTTCTGTCTTTCTTACTTATTTATAGAGAATGG AGAAGTAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGCTTGGGAGATACTTGTGACAGGATCAGTCCTGTTACAG TAAGTATCGGGTATGATCTGAATGAAGCTGCATCAATCAGAGTTTACTGCGGAAGTGGCTTCACGTTTGCTTTAACTATG CCATAAAATCTTCTCAAACTCGAAGATGCACTACTTTGGCATGCATATCTAAAGAAGTCATCATCAGTTTAGTTCGAGTA CTACATTTACAGTGGCAGTATATAGAATGATGATACACCCCAAGGAAGGCTTTATACTGCTCAAGTGTTGCTTAGGATAC AAGCTGCACTGCACTAGCCATAGGCTCCTATGGTCCCTCACAAAAACTAGGATGGAGAAGGAATGTGGATATAGATATGC AGCCAGTTTGGGAGCTTATTAGAGCTTGTCTATTGGGAAGAAAACACTAAATAAGGTCCATTTAATGGACTAGTTTTGGC GGTATAGAGTGGCGGCAGCTAGAGGCATGTTTCCCGAATTCTGGTTTGAGCTAGAACATGGATGAGATTCTGCACTGGAC TTTACCCGTTAATTTAAGAGGGTGAATGATTGTAGTCCATAATACTGCCATTTCTTTATAGAGAAAGGGAAAGGAAAACC AAACAATGTCATAATTTTCCGTTTCTTGTTGTAATTGATTCGATTTGAGTGGGACTTTGGAATGTGAAATAACAAGGAAA AATTGGAAACCTGTGTTTTCTTCCACCCTCGTCGTTTATCA
CDS sequence (LotjaGi2g1v0309300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACATGAACAGTGGGAGAAACCAGACAACGAAGACGACAAGCATCAACCAGAACAACGAATATGGAGTTGGGG TGCAGGAACAGAGGGCCAGTTAGGAACAGGGAAGCTTCAAGACGAGCACCACCCTCAACTCCTTCACCAACCCTCTCTGT CTTCCATCTCCTCCCTTGCATGTGGCGGCGCTCATGTCGTCGCCTTGACTTCCGACGGGAAGGTACTGTCATGGGGTAGA GGCAGTTCTGGTCAACTAGGCCATGGAGAGGTTGTTAATAACGCCTTGGAACCAAAAATTGTAACATCATTGGATGGTTA CTTCATAACCCATGTTTCTGCTGGTTGGAGTCACTCTGGTTTTGTTTCAGATACTGGGTGTTTGTTCACTTGTGGGGATG GTTCGTTTGGTCAACTTGGGCATGGGGATTATGCATCACAGTGCTTTCCTGTGAGAGTTTCATGTTTTGTTGATCAGCAT GTTGTGAAGGTAGCTTGTGGTATGAGACATTCCCTTGTTTTGCTGAAAGATTGTCCATTGAATCAAGTTTATGGATTTGG CTCTGGAAAGCGTGGTCAATTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGATTTG AAGATGTGCAGATAGTTGAAATTGCTACAAATGGTGATCATAGTGCTGCACTATCTGTTGATGGGCATCTTTACACCTGG GGAAGAGGCTTCAAAGGCTGTGAAGATTCTCATTTTCCACAATGTTTAGACTCTACAATGAGTTTTACCAAAGCCACTTT GGGATGGAACCATGGTTTAGCTATGACTGGTGAGGGTGAGGTTTATATGCTTGGTGGCAACCACCTTGGAATGCTTAGTG ATATTCAGAATGTGAGCTCAGCTAAGCAGTTACCTGTAGATTCAAGAGAAGCCAATTTGGATAAAGTCCTTGGCCTTGAA GGGGCAAAGGTTGTTGATATTGCTACGGGAGCTGAACATTCCATCCTTGTCACAGAGAATGGAGAAGTAAAGACATGGGG TTGGGGTGAGCATGGTCAACTTGGCTTGGGAGATACTTGTGACAGGATCAGTCCTGTTACAGTAAGTATCGGGTATGATC TGAATGAAGCTGCATCAATCAGAGTTTACTGCGGAAGTGGCTTCACGTTTGCTTTAACTATGCCATAA
Protein sequence (LotjaGi2g1v0309300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEHEQWEKPDNEDDKHQPEQRIWSWGAGTEGQLGTGKLQDEHHPQLLHQPSLSSISSLACGGAHVVALTSDGKVLSWGR GSSGQLGHGEVVNNALEPKIVTSLDGYFITHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDYASQCFPVRVSCFVDQH VVKVACGMRHSLVLLKDCPLNQVYGFGSGKRGQLGVSKDRIKSINLPKVVSGFEDVQIVEIATNGDHSAALSVDGHLYTW GRGFKGCEDSHFPQCLDSTMSFTKATLGWNHGLAMTGEGEVYMLGGNHLGMLSDIQNVSSAKQLPVDSREANLDKVLGLE GAKVVDIATGAEHSILVTENGEVKTWGWGEHGQLGLGDTCDRISPVTVSIGYDLNEAASIRVYCGSGFTFALTMP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 392 | 392 | 1.0E-174 | – | |
| PANTHER | 1 | 392 | 392 | 1.0E-174 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Gene3D | 13 | 305 | 293 | 1.4E-72 | ||
| SUPERFAMILY | 21 | 294 | 274 | 9.81E-70 | ||
| ProSiteProfiles | 21 | 72 | 52 | 15.851 | ||
| PRINTS | 22 | 38 | 17 | 8.6E-19 | ||
| Pfam | 22 | 69 | 48 | 5.0E-11 | ||
| PRINTS | 56 | 69 | 14 | 8.6E-19 | ||
| Pfam | 72 | 121 | 50 | 1.0E-12 | ||
| ProSiteProfiles | 73 | 125 | 53 | 14.363 | ||
| PRINTS | 75 | 91 | 17 | 8.6E-19 | ||
| ProSiteProfiles | 126 | 177 | 52 | 14.062 | ||
| Pfam | 126 | 174 | 49 | 8.9E-12 | ||
| PRINTS | 164 | 180 | 17 | 8.6E-19 | ||
| ProSitePatterns | 164 | 174 | 11 | - | ||
| ProSiteProfiles | 181 | 234 | 54 | 14.645 | ||
| Pfam | 182 | 231 | 50 | 1.8E-7 | ||
| PRINTS | 268 | 286 | 19 | 8.6E-19 | ||
| ProSiteProfiles | 279 | 340 | 62 | 10.584 | ||
| Gene3D | 306 | 394 | 89 | 7.4E-20 | ||
| ProSitePatterns | 327 | 337 | 11 | - | ||
| PRINTS | 336 | 357 | 22 | 8.6E-19 | ||
| ProSiteProfiles | 341 | 395 | 55 | 12.434 | ||
| Pfam | 341 | 392 | 52 | 1.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0309300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…