Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0364000 |
| Transcript ID | LotjaGi2g1v0364000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86155565..86160893) extracted from Lotus japonicus Gifu genome v1.2.
AATATATGTAAACTAGTGGCTAGTAAGGAGTATTCATTGCAAGTTGCAACCCTATGAGTATGAGGCTTTCATCCACCGCC ACCCTGAAAACCTTTCGCCAGATCTTCCGAAATGGCATGAGCGTTAACATTTACAACTTCAGGATCCGCGGCTTCGCCGG CGCTGGAAACTTTGAATCAGAATCGGCATTGATAGTGGCGAGATGCAAGGAGAAGAAGGTGCGGGAAGCGTTTGGGTTGT GGAAAGCCATGACTGACAAGGGTGTGGAGCCAAATTTGGTTTCGCTGAATGCGGTTATTCAGGGGTTGTGCGAAGAAGAA CGGATGGAAGAGGCTGAGGAGGTGGTTGAGGAGATGAATCGGAAGGGTTTGACCCCTGATGAGAACACTAACATGTCTCT GTTTCCGGTGCGAAGCAGATAAGGCTTATAAGGTTTTGAGTGAAATGATTGTTAGAGGTTTGTCACCATCTGTCGTTATA TACAACAAGCTTGTTAGTGCATATTGCGTCGGAGAGAGAGAGAGAGGGTTGAGAAGGCTGTGGGGATTTTGAGGGTCATG GCTAAGAGGGGTTTGTCCCCTGATGCTGTTAGTTATACCACTGTTATATCTGGGTTTTGTTATCTCGACGAGCCGGAGCT GGACAAGGCGCTTGAAATGAAGGCGGAGATGCTTCACAAGGGCATCTTACCACGTATGCCTGTGCCTGGAGGGAAGCTTG TCCAAAGCATTTGATCTCTTCCTAGAGATGCTGCGCGGGGGTGTGTTGCCAGATAAGCTTACTTATTTTATATTGATGAA TGCTTATTGTCTTGAAGGTAAATTCTGTAAGGCTTTTCATATGCATCATGAGATGACACACAAGGGTTTTTTGCCTGATT TTGTTTCTGGGTTTTCACCCTCTCTTGTTACATACAATGCGCTTATTCATGGACTTTGCCTTTTGGGGAGGGTTGAGGAG GCTTTGGGGATTTTGAGGGGCATGGCTGCGATGGGTTTGCCCCCTGATGCTGTATGTTATACCACTGTTATATCCGGGTT ATGCAAAATCGGGGAGCCGAGGAAGGCGTATGAATTGAAGTTGGAGATGGACGGAAAGAACTTCTGGTGGCTGGATCTAG ACACATATGACTCGCTTATGGAAGACCTGTCGGATGAGGATATTTATTCTAATATGATGAATGATTATTTTGCTCAAGGT AACATGAAAAAGGTTTATAGATTGGATTATGATATGAAACACGATGGTTATTTAACTAGTGACGTTATCTTTCGTGTGTA TCTGAATGCACTTAATAAGAAAGCCAGGACAATAGATGCTAAGAGGACCCTTCTGGATATGATTTATAAAAACTTGTGGA CTAAGCCATCTTATTTTACATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGGGCTTGTC AAAGATTTCAGCATGAGGGGTTTAGTGGGTGATGCCGGCAGAGCTCGTGACACAATGCTTCACGGGAATTATAAGCCAGA GGGATCAGTTTATAATTTATTAATATTTGATCATTGTAGATCTCATAGTGTTAATAAGGCATATGATATGTACAAGGAGA TGGTGCATTATGGCTTTGCTCCTCATATGTTCTCTATACTTGCTGTTATTAAGGCTCTACATTATGATAGAAGGTACAAT GAGATGATGTGGGTAATTAAAAACACATTGAAGAGCTGCAATCTCAATGATTCTGAGCTACGTAAAGTACTTAACAAAAT TAATGTCAGGGAATGTGATATTGATGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGGTGGTCTGTTACTTGATGGTG GAAAGTGTTCATATGCTTCAGCAAGTACCTAATATCTTTGGTTCTGCTTGTTGAACTCTGTTATCATAAACCTTGAGCTG ACCCTTCCACCTTGCATCTAGCATGATTTGGCTTGGAGGCTTGCAATATGGAAAGTTTTCCCTTGTTAGGAAAGCAATTT ATCATCTTTTACTTGGAACTCTACAGCTATCAAAGACCTCCTTCTAGACCAGGTCGTTCAGATCTTTTTTTTTTTAATTG TCAAGTATGAAGTTACTTGCTTTCAGTCATAAGTAGAAATCAGTAGCTTGGTATTTTTTTAACCAAAAGGTCTTTCTAAC TCTTGCTAAATTACTTTCAGGTTGGTGGGAATCATGTTTTATGATTTTATGAATTTCAATAATTTTGAATGAGGGTTGCT GAAATCAACAAAGTATTATCTGACATGATCTGTCATTTATTATTTCACATGAATGATAAAATTTAAATCTGTTCTCCCTA AACTCCCAAGGTCCCAAGCTCATAGGGTAAATCAGTAAGCTGGGGTCCGGGATTGAAGATGTTGGGGGGTTTCACTAACT CAAGTTCTTTCTGTCTTCTTGTAGACTCTTTTCTTGTCCCTTGGGTTGTTGGGGGGTTTCACTAAAATTATGTGTCTTAT TACATGTTAAATGCGGTAATAATTGCTCTTCAGAGGTTACGGGTGGCTATTTACCGTTGGGAGTTATTGTGCTCAGACCC TTGGGTTCCCAACGGTGAACCAACGGCTTCTAGGGCCAGAGTACTTCGAAGGACGGTTTTTAGGAGATGCTATGCATTTG GTCCCTTCTTTTCGACCGAATTGTCGCTATGCGAGAACTGGGGAGGGACACAACCCTCCAAGCCCTTAAGCGTGTGCGCT TAATGGACTTTAAGATAAGATTTCCTTTTTGATCCGGTTGTTTAGCTATCTGATAACTCGTGAGGGACACTGCTATCCAA GCCATTTAGCGTGTGCGCTTGATTGGCTTTAAGATAAAACTCATGCAAAAGCTAAAAACTTTATGACTGAACCACCAACT GTATAAAACTGACACCCAGATGGAGAACATTGCTCCATAGTGCAGAGCTTGCTGCAGCTGAGAATTTGATGTTCATTGGT GTCATAGTTTTGTGATTTTCTAGAGTTTACTTCTCATCATATTATCAGTAATGTAATATCATCCCTTCCTTTTGTCCTTT GTTGAGATTTGACTGGTTATCATTACAGCTATAACATGTTTGGATGAGGTTCTCTTACCTGAATTAAGTCTGAAGTTTAG AGCTACTCACCCAGATTTGATTCTGACTACAAAATCAATTATGGAAGAGTTTCCAATCATGCACTTAGCACATAATCTGC TCATGTTTCTGTTTTTTAGGTATGTTGGTGATATGGTAGTAACAGTATACCTGTTGTGCGAGCGAGCTTGATTTATGGCT GCTCCTCCATTTTGGGATTGCTGCATTACTTCCCTTCCTATTCCTTCTCCACCACTCTTAATTCAGCATGATATTGGGGC CTTGCTTGTTTCTTTTGGCCGGGGACATCATTAGGATGATGTGTGATCCGTTGAAATGAGAAGGTGGACACTGTCCCATG GTTGGTGATTCATTAAAAGTGAGATGCCTTATAGTGTGTTTTGGATTAATCACACACATGCTGTTGCAGAGAATGTACTT TTATGGAAAGGAAATTGTTCCTTTCATGGTTGCACACCTCTTAAATGTGCAAATTCATTGCTGCTGAGAATGTACTTTTG TTCACTCCGCTTCTTCATTGAAGGCTATCTAAATGTGTAGCCATATCAGGTTTCTAGGTTATAGTAATGCCCATGGTAGT GAGCTTTACATTTTATAGTGTTCATGGTAGATCACTAGATCTATCCACCTATCTTACCTTGATCTGATTCTTTACGTTGT TCATAAACTTCTCAGACTTATTTTTTCTTATAATGTGGTTCAATGAGTTTTTTTAAGGTCGATCTTTCATAAATCTTTAA AAGCATACAAATAGTACAACCTCATTTTGGTATCTGAAAGTTTAATTGCTTGATCCATTTAGTTCTTGAAAATATAAACA TAAAGGTCCCGTTTGGAAGAGATTATTTGAGCTTATTTTATAGTATAAATGCTTGTGTTAATGTTTGGAAGAGCCTATAC AAATAGCTTGTTGCAACACTAGGCCAACTAAAATCTTTTATTTCACTTGTTTGTAAAAGCACACTAACATTGATACTGAT TTGTTGCATCTATTTTGTTATTCATTTCTTGTTTATCTTTCATTGAAACCTGATCACTGATTCTAACTAAGCACTCTGCC TCTGTCTTTTTGTAGTCATGCAATTCGGTCTCTATAGTCTATAAAAAGCTGCTTCATCGAGCCCCAAAGGCGTTGAATAG GTACAGCCTACCTTGGTTGCACCTGCAGGTGACCTTGAATTGTATATAACTTCATTCAATGTTAATGTGCATGTGAGAGA TGTCTGCACAGCCTAAGGTTGTTGTCAAAGTTGAAAGTGAAGAATATATGCTGGCTTTGCAAGTAAGTTTTGTTCAGGGA AATTTTATGGTACATTAGCTAAGTTCTTGTGGAATGTGTGTAATATCTGTATTGGATACTTGCTTGCTATAGAGGATGAC TATTAGAGAAAAAGCTGGCATTCATAGAGCAATGTAAGGCAGGAAAGTTTTAAGTTGTTCTCAAAGAAATCTTGTGGCTA ATTTTAATTGAACAGTGTGGAGAAGGCAAAGGAATGAGGTCATAGCTCTCTTGCATAGTAGTATTAATTTAGGTTATAAG TATTAATTTAGATTTAGGTGACTTTTTCCTTTTCTTTTTAATGGAAAATAGGAGGTTTTAAAAATCATTTAGTTATTACA TTTTACTTAAAAAATAATTCAAAAGGTTGTTAAAAAAATTAATTCAAAAAAGGTTGTACTGTTTTGCTTTTCCCTAATGC TATCTTTCTTTGTATGATCATATATAATTTTTTTAAAGGTTGTTACATTTGTTTTTTCTTTTCTTTCAAACCAAGTAAAT TGACGTAAAGGTTCAGGCGTTCAGCACTTTATCTCATAAATGAGTGGTTGGGGGTTAAATTTCGACAATCTCTTGCCACT TAGTGGGTTGAGACAGGGAATTAGTCTCACGCCTATCACTTGTCACCAACACGAGTTGAGAATAAGTTATGAAGCTTGAG GAAGGGAGAAACTTGTTGCACTGCTGTGTGGTACATATCACGTGATCCTTTCTATTTTTATTTTTCCCATTAATTAGGGT GGATGTGAAAAATGGGTGTTAACAGATTTATTTCACTCTTAACATAACTTCAGAAAAAAAAAATGAATGTAAGTTTAGAA TATTTAACGTGGACCAGCCCATAATAATACATAGGATCTTGCAGTGGCTGCTTTGAATGTCTTAGATTGAAGCGTGGAAG ACGATAGCCCATTTTTTTATTCGTTTGGATCTCGACAAGTTGTGACAAG
CDS sequence (LotjaGi2g1v0364000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCGCGGGGGTGTGTTGCCAGATAAGCTTACTTATTTTATATTGATGAATGCTTATTGTCTTGAAGGTAAATTCTG TAAGGCTTTTCATATGCATCATGAGATGACACACAAGGGTTTTTTGCCTGATTTTGTTTCTGGGTTTTCACCCTCTCTTG TTACATACAATGCGCTTATTCATGGACTTTGCCTTTTGGGGAGGGTTGAGGAGGCTTTGGGGATTTTGAGGGGCATGGCT GCGATGGGTTTGCCCCCTGATGCTGTATGTTATACCACTGTTATATCCGGGTTATGCAAAATCGGGGAGCCGAGGAAGGC GTATGAATTGAAGTTGGAGATGGACGGAAAGAACTTCTGGTGGCTGGATCTAGACACATATGACTCGCTTATGGAAGACC TGTCGGATGAGGATATTTATTCTAATATGATGAATGATTATTTTGCTCAAGGTAACATGAAAAAGGTTTATAGATTGGAT TATGATATGAAACACGATGGTTATTTAACTAGTGACGTTATCTTTCGTGTGTATCTGAATGCACTTAATAAGAAAGCCAG GACAATAGATGCTAAGAGGACCCTTCTGGATATGATTTATAAAAACTTGTGGACTAAGCCATCTTATTTTACATATGATA CTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGGGCTTGTCAAAGATTTCAGCATGAGGGGTTTAGTG GGTGATGCCGGCAGAGCTCGTGACACAATGCTTCACGGGAATTATAAGCCAGAGGGATCAGTTTATAATTTATTAATATT TGATCATTGTAGATCTCATAGTGTTAATAAGGCATATGATATGTACAAGGAGATGGTGCATTATGGCTTTGCTCCTCATA TGTTCTCTATACTTGCTGTTATTAAGGCTCTACATTATGATAGAAGGTACAATGAGATGATGTGGGTAATTAAAAACACA TTGAAGAGCTGCAATCTCAATGATTCTGAGCTACGTAAAGTACTTAACAAAATTAATGTCAGGGAATGTGATATTGATGC TCTTTTGGATGTGCTAGCTGAAATAGCCATGGGTGGTCTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCAAGTA CCTAA
Protein sequence (LotjaGi2g1v0364000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRGGVLPDKLTYFILMNAYCLEGKFCKAFHMHHEMTHKGFLPDFVSGFSPSLVTYNALIHGLCLLGRVEEALGILRGMA AMGLPPDAVCYTTVISGLCKIGEPRKAYELKLEMDGKNFWWLDLDTYDSLMEDLSDEDIYSNMMNDYFAQGNMKKVYRLD YDMKHDGYLTSDVIFRVYLNALNKKARTIDAKRTLLDMIYKNLWTKPSYFTYDTLIENCSNNEFKSLVGLVKDFSMRGLV GDAGRARDTMLHGNYKPEGSVYNLLIFDHCRSHSVNKAYDMYKEMVHYGFAPHMFSILAVIKALHYDRRYNEMMWVIKNT LKSCNLNDSELRKVLNKINVRECDIDALLDVLAEIAMGGLLLDGGKCSYASAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 46 | 46 | 1.1E-6 | ||
| Phobius | 1 | 284 | 284 | - | – | |
| PANTHER | 5 | 46 | 42 | 9.5E-38 | – | |
| PANTHER | 5 | 46 | 42 | 9.5E-38 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 11.071 | ||
| TIGRFAM | 15 | 44 | 30 | 6.6E-5 | ||
| Pfam | 15 | 41 | 27 | 0.054 | ||
| Gene3D | 47 | 136 | 90 | 1.0E-20 | ||
| PANTHER | 49 | 118 | 70 | 9.5E-38 | – | |
| PANTHER | 49 | 118 | 70 | 9.5E-38 | – | |
| Pfam | 51 | 100 | 50 | 9.1E-14 | ||
| ProSiteProfiles | 52 | 86 | 35 | 12.551 | ||
| TIGRFAM | 54 | 88 | 35 | 5.3E-9 | ||
| ProSiteProfiles | 87 | 121 | 35 | 9.175 | ||
| TIGRFAM | 89 | 117 | 29 | 2.2E-5 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.552 | ||
| Gene3D | 137 | 224 | 88 | 1.0E-6 | ||
| PANTHER | 139 | 304 | 166 | 9.5E-38 | – | |
| PANTHER | 139 | 304 | 166 | 9.5E-38 | – | |
| Gene3D | 225 | 344 | 120 | 4.5E-8 | ||
| ProSiteProfiles | 258 | 292 | 35 | 9.745 | ||
| Pfam | 261 | 290 | 30 | 0.0052 | ||
| TIGRFAM | 261 | 292 | 32 | 8.5E-4 | ||
| Phobius | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 374 | 70 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0364000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…