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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0369100 |
| Transcript ID | LotjaGi2g1v0369100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G59780.3 myb domain protein 59; Swiss-Prot: sp|Q4JL84|MYB59_ARATH Transcription factor MYB59; TrEMBL-Plants: tr|G7JTP3|G7JTP3_MEDTR Myb transcription factor; Found in the gene: LotjaGi2g1v0369100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86650279..86652386) extracted from Lotus japonicus Gifu genome v1.2.
CACATTGCAGTCAACTTAACTAGAATCCAAACCCATTGTCATGAGGAAGTACTGTTCCCTCTGATTATCTCCTTTGCAAT GGCTGACATCATCCCAAAATGGCCATAGCAAATGATCACATGAACGGTGGATATGCAAGCTTGCTTATTGTTATAGTCAT GTCCAAAAAAAAACTCAGATTGTGAGTTCATGACAGAACACATATAAATACTGTCCTAGTGCCTGTATAGGTCCCCATAA GTGTGGTGAAAGAAAGTCTTCTTCTTCTTCCTACACAACACTTCCTATACTGAGGAAAAACAAAACATAAGAAAGAAAAA ATGGTTCTGCAACAGGAATTCCGAAAGGGTCCCTGGACAGAACAAGAGGACTTCAAACTAGTCTACTATGTAGGCTTGTT TGGAGACCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAAGGTGGCGGGAGACAGTAAATAATAGGTATGCTTAT AAGGGCATGCTGAGTTTTACAAGAAGCACCTTTTATAACATCCTCACTTTGTTGTAGGTTTGAGTAGAACTGGTAAGAGT TGCAGGTTACGTTGGGTTAATTACCTTCACCCTGATCTCAAACGCGGCAAGATGACACCCCAAGAAGAGCGTCTAGTCAC GGAGCTTCACTCCAAATGGGGAAATAGGTTTGAGAAATATGCAGAAATTTTAGCTGCAGATTACTCAAAAAATGCTTTTA TTGTATTCAATTTAATACTTTTTTAAGTGACAGAGCGGTCTTGCTGTCACGATTAACTGAGATTCAACTTCTTTCGCTTC AATTTGTATAGTTTCTTTGATTGAATTTCACTGGTTGCTTAGATTGAAATAGCTTTCATGGTTTTTTTTGTGCAGATGGT CTAGAATTGCTCGCAAATTACCGGGGCGCACTGATAATGAGATCAAGAACTATTGGAGGACTCACATGAGGAAAAAGAAG GCTCAGGAGAAGGAGAAGAAGCGTGCAGCAGAAGCTGCATCATCATCATCACCTGCTGATTCTTCAAGCTGTGAATCCTC ACTGACCTCAAATAATCATGGTGTGGATTCACATGCTTCCAAAGAGGCTGGAGAAGAAGACAGCTTTTATGACACAGGTG GAGCTCATAACATGAATAATGTTCATGTAATTGGAGAAGATCACCAAGATGGTGGTGATGATCAGGGGTACTCTATGGAT GATATATGGAAAGATATTGCTATGTCAGAAGATGAGAATTTTAATCTGCAACCAGTCTTCGATGGGTATAGTGAAGAAGG TTGCAATTTCTCTTATCCTCCATTGTTTTCTCCATCATGGGATTATTCTTCAGACCCCCTTTGGGTGATGGATGACGAAG AAAGAAAGATGTTGTTTCCTCTGAGTCATGATCACCAATCTTTATCCTTCTATGGTGACCAAGGAAGAACATTTCTAACA GGCTAATCAGGAGGATTCTTTTTGAAATCAAGACCAATACTTTGTTCATATGTGTGGAATCTGGTATAAGAAAGCCTAAC CTGAATGGATCATGTTTCATTCATACCCATTTTTTTACACTAACCCTGTATGTATGCACTTCCCTTTTTCATGGTAGAAA AAGGAAGGAGATCTAAGGATTAAGTTTTCTATTCCTTATTTTACTGTAAAAAGAGATGTGTATATATATAGGGATGGTGT TAAAAATTGAAGTATGAGAAAATCATAGATCAATATGTATAGCATAGCATCTTTAAGCTTTAAGCATGGTTCTTCATAGT GTGACACAGCTGTAACATATCTCAAGCACAGCATATAACTGTTGTCTATATCAATGTTTGTGCTTATCATCCATAGGCTG GTGGTATGTTCTGAGTGTAAAATATCAAGCACTTGTTTAAATTTAACTTTCAATATGATTTGGATACCTCTCAATACAGC ACTTTAAATTTTTTATTAGCAGCCACTAACTAATTATGCGTGAATAATCTATACAGCTTTCCAATAAGAATAGTATAATA AGATGCCAAGCACATAGATCAAGCAGTCGTGTGAAGATAACCCATCAATAAAGGGGTTTGATATATTTGCACTTCATTTT ATTTTCTATTTAGATAACTTTTTGTTTC
CDS sequence (LotjaGi2g1v0369100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGCAACAGGAATTCCGAAAGGGTCCCTGGACAGAACAAGAGGACTTCAAACTAGTCTACTATGTAGGCTTGTT TGGAGACCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAGTAGAACTGGTAAGAGTTGCAGGTTACGTTGGGTTA ATTACCTTCACCCTGATCTCAAACGCGGCAAGATGACACCCCAAGAAGAGCGTCTAGTCACGGAGCTTCACTCCAAATGG GGAAATAGGTTTGAGAAATATGCAGAAATTTTAGCTGCAGATTACTCAAAAAATGCTTTTATTGTATTCAATTTAATACT TTTTTAA
Protein sequence (LotjaGi2g1v0369100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLQQEFRKGPWTEQEDFKLVYYVGLFGDRRWDFIAKVSGLSRTGKSCRLRWVNYLHPDLKRGKMTPQEERLVTELHSKW GNRFEKYAEILAADYSKNAFIVFNLILF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 91 | 89 | 7.1E-56 | – | |
| PANTHER | 3 | 91 | 89 | 7.1E-56 | – | |
| ProSiteProfiles | 4 | 60 | 57 | 21.685 | ||
| Gene3D | 6 | 62 | 57 | 5.8E-17 | – | |
| SMART | 8 | 58 | 51 | 2.7E-14 | ||
| Pfam | 9 | 56 | 48 | 1.4E-14 | ||
| SUPERFAMILY | 10 | 84 | 75 | 7.11E-22 | ||
| CDD | 11 | 56 | 46 | 6.68359E-11 | ||
| SMART | 61 | 102 | 42 | 38.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0369100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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