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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0369100 |
| Transcript ID | LotjaGi2g1v0369100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G46130.1 myb domain protein 48; Swiss-Prot: sp|Q9LX82|MYB48_ARATH Transcription factor MYB48; TrEMBL-Plants: tr|I3RSY5|I3RSY5_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi2g1v0369100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86650476..86652213) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGATTGTGAGTTCATGACAGAACACATATAAATACTGTCCTAGTGCCTGTATAGGTCCCCATAAGTGTGGTGAAAGA AAGTCTTCTTCTTCTTCCTACACAACACTTCCTATACTGAGGAAAAACAAAACATAAGAAAGAAAAAATGGTTCTGCAAC AGGAATTCCGAAAGGGTCCCTGGACAGAACAAGAGGACTTCAAACTAGTCTACTATGTAGGCTTGTTTGGAGACCGTAGA TGGGACTTTATAGCTAAGGTTTCAGGTTTGAAGGTGGCGGGAGACAGTAAATAATAGGTATGCTTATAAGGGCATGCTGA GTTTTACAAGAAGCACCTTTTATAACATCCTCACTTTGTTGTAGGTTTGAGTAGAACTGGTAAGAGTTGCAGGTTACGTT GGGTTAATTACCTTCACCCTGATCTCAAACGCGGCAAGATGACACCCCAAGAAGAGCGTCTAGTCACGGAGCTTCACTCC AAATGGGGAAATAGGTTTGAGAAATATGCAGAAATTTTAGCTGCAGATTACTCAAAAAATGCTTTTATTGTATTCAATTT AATACTTTTTTAAGTGACAGAGCGGTCTTGCTGTCACGATTAACTGAGATTCAACTTCTTTCGCTTCAATTTGTATAGTT TCTTTGATTGAATTTCACTGGTTGCTTAGATTGAAATAGCTTTCATGGTTTTTTTTGTGCAGATGGTCTAGAATTGCTCG CAAATTACCGGGGCGCACTGATAATGAGATCAAGAACTATTGGAGGACTCACATGAGGAAAAAGAAGGCTCAGGAGAAGG AGAAGAAGCGTGCAGCAGAAGCTGCATCATCATCATCACCTGCTGATTCTTCAAGCTGTGAATCCTCACTGACCTCAAAT AATCATGGTGTGGATTCACATGCTTCCAAAGAGGCTGGAGAAGAAGACAGCTTTTATGACACAGGTGGAGCTCATAACAT GAATAATGTTCATGTAATTGGAGAAGATCACCAAGATGGTGGTGATGATCAGGGGTACTCTATGGATGATATATGGAAAG ATATTGCTATGTCAGAAGATGAGAATTTTAATCTGCAACCAGTCTTCGATGGGTATAGTGAAGAAGGTTGCAATTTCTCT TATCCTCCATTGTTTTCTCCATCATGGGATTATTCTTCAGACCCCCTTTGGGTGATGGATGACGAAGAAAGAAAGATGTT GTTTCCTCTGAGTCATGATCACCAATCTTTATCCTTCTATGGTGACCAAGGAAGAACATTTCTAACAGGCTAATCAGGAG GATTCTTTTTGAAATCAAGACCAATACTTTGTTCATATGTGTGGAATCTGGTATAAGAAAGCCTAACCTGAATGGATCAT GTTTCATTCATACCCATTTTTTTACACTAACCCTGTATGTATGCACTTCCCTTTTTCATGGTAGAAAAAGGAAGGAGATC TAAGGATTAAGTTTTCTATTCCTTATTTTACTGTAAAAAGAGATGTGTATATATATAGGGATGGTGTTAAAAATTGAAGT ATGAGAAAATCATAGATCAATATGTATAGCATAGCATCTTTAAGCTTTAAGCATGGTTCTTCATAGTGTGACACAGCTGT AACATATCTCAAGCACAGCATATAACTGTTGTCTATATCAATGTTTGTGCTTATCATCCATAGGCTGGTGGTATGTTCTG AGTGTAAAATATCAAGCACTTGTTTAAATTTAACTTTCAATATGATTTGGATACCTCT
CDS sequence (LotjaGi2g1v0369100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGCAACAGGAATTCCGAAAGGGTCCCTGGACAGAACAAGAGGACTTCAAACTAGTCTACTATGTAGGCTTGTT TGGAGACCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAGTAGAACTGGTAAGAGTTGCAGGTTACGTTGGGTTA ATTACCTTCACCCTGATCTCAAACGCGGCAAGATGACACCCCAAGAAGAGCGTCTAGTCACGGAGCTTCACTCCAAATGG GGAAATAGATGGTCTAGAATTGCTCGCAAATTACCGGGGCGCACTGATAATGAGATCAAGAACTATTGGAGGACTCACAT GAGGAAAAAGAAGGCTCAGGAGAAGGAGAAGAAGCGTGCAGCAGAAGCTGCATCATCATCATCACCTGCTGATTCTTCAA GCTGTGAATCCTCACTGACCTCAAATAATCATGGTGTGGATTCACATGCTTCCAAAGAGGCTGGAGAAGAAGACAGCTTT TATGACACAGGTGGAGCTCATAACATGAATAATGTTCATGTAATTGGAGAAGATCACCAAGATGGTGGTGATGATCAGGG GTACTCTATGGATGATATATGGAAAGATATTGCTATGTCAGAAGATGAGAATTTTAATCTGCAACCAGTCTTCGATGGGT ATAGTGAAGAAGGTTGCAATTTCTCTTATCCTCCATTGTTTTCTCCATCATGGGATTATTCTTCAGACCCCCTTTGGGTG ATGGATGACGAAGAAAGAAAGATGTTGTTTCCTCTGAGTCATGATCACCAATCTTTATCCTTCTATGGTGACCAAGGAAG AACATTTCTAACAGGCTAA
Protein sequence (LotjaGi2g1v0369100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLQQEFRKGPWTEQEDFKLVYYVGLFGDRRWDFIAKVSGLSRTGKSCRLRWVNYLHPDLKRGKMTPQEERLVTELHSKW GNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKEKKRAAEAASSSSPADSSSCESSLTSNNHGVDSHASKEAGEEDSF YDTGGAHNMNNVHVIGEDHQDGGDDQGYSMDDIWKDIAMSEDENFNLQPVFDGYSEEGCNFSYPPLFSPSWDYSSDPLWV MDDEERKMLFPLSHDHQSLSFYGDQGRTFLTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 256 | 254 | 5.2E-126 | – | |
| PANTHER | 3 | 256 | 254 | 5.2E-126 | – | |
| ProSiteProfiles | 4 | 56 | 53 | 15.637 | ||
| Gene3D | 6 | 62 | 57 | 3.9E-16 | – | |
| SUPERFAMILY | 7 | 103 | 97 | 5.62E-29 | ||
| SMART | 8 | 58 | 51 | 2.7E-14 | ||
| Pfam | 9 | 56 | 48 | 8.3E-14 | ||
| CDD | 11 | 56 | 46 | 1.09151E-10 | ||
| ProSiteProfiles | 57 | 111 | 55 | 26.829 | ||
| SMART | 61 | 109 | 49 | 2.8E-16 | ||
| Pfam | 62 | 106 | 45 | 2.7E-14 | ||
| CDD | 64 | 107 | 44 | 7.78588E-12 | ||
| Gene3D | 64 | 134 | 71 | 2.1E-18 | – | |
| MobiDBLite | 98 | 166 | 69 | - | – | |
| MobiDBLite | 125 | 148 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0369100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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