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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0372000 |
Transcript ID | LotjaGi2g1v0372000.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 70 kDa heat shock protein; TAIR: AT5G02500.1 heat shock cognate protein 70-1; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|A0A0R4J4D6|A0A0R4J4D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0372000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86876892..86879268) extracted from Lotus japonicus Gifu genome v1.2.
TCAATTAGCATGGCTGGTAAAGGTGAAGGTCCGGCGATCGGAATCGATCTCGGAACGACGTACTCCTGCGTCGGCGTTTG GCAGCATGATCGTGTTGAAATCATAGCTAACGATCAGGGTAACAGGACTACTCCGTCCTATGTCGCTTTCACAGATACTG AGCGGTTGATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCTACCAACACTGTTTTCGGTAAGTCCTAGTTCTTT CTCTTCCACATTGCTCTTCTGCAATTCCATTGAGTCTGTTAAATTTTTTATTATTATGATTTTGATTTTATTTTATGATA ATTTAGGAAATTATGAGACGTTGTAGATTTATAATTGTTATGTGGTTTGATCGTGTATCTGTAGTTCTGTACAAATTGAT TTTCTCCAATTTTACTCTGTTTCAGTGATTCTATAGCTCACAAATGCATTCAATATTGTTGTGAATTTTGCAGTTTGTTT ATGTGCTAGCTAGTAGTTATGAGATTTGATTGTGCTTCTTAATTAGAGTTTGAATTGCAGCTTCCAATTCATTGTTATGA TGCTTTTTTTAACTGAGTGAAAAATTTGGTGTTGTGTATGGTTTTGGTGATGATGTTGGTTTGATTTTGCGTGTGCAGAT GCTAAGCGTTTGATTGGAAGGAGGTTCAGCGATACTTCAGTGCAGGGTGACATGAAATTGTGGCCATTCAAGGTGATTCC AGGCCCTGCTGACAAGCCAATGATTGGGGTGAATTACAAAGGAGAGGAGAAGCAGTTTTCTGCAGAGGAGATATCTTCAA TGGTTCTCATGAAGATGAAGGAGATTGCGGAGGCGTATCTTGGTACAACGATTAAGAACGCGGTGGTTACTGTGCCGGCT TACTTCAACGACTCTCAGAGGCAAGCTACCAAGGATGCTGGTGTGATTTCTGGGCTCAATGTGATGCGAATCATCAACGA GCCTACCGCGGCGGCGATTGCGTATGGGCTTGATAAGAAAGCCACCAGCACCGGGGAGAAGAATGTTCTGATTTTCGATC TCGGTGGTGGGACTTTTGATGTTTCGCTTCTCACCATTGAGGAAGGTATCTTTGAGGTGAAATCCACTGCTGGTGATACT CATTTAGGGGGTGAGGATTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGGATAT TAGTGGAAATGCCAGGGCTCTTAGGAGGTTGAGAACAGCTTGTGAGAGGGCCAAGAGGACTCTGTCATCCACTGCTCAAA CCACCATTGAGATTGATTCGTTGTATGAAGGAATTGACTTTTACACCACCATTACTCGTGCTAGATTTGAAGAGCTGAAC ATGGATTTGTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTTTGAGGGATGCAAAGATGGACAAGAGTACAATCCATGA TGTTGTTCTTGTTGGTGGGTCAACAAGGATTCCCAAGGTTCAGCAGTTGTTGCAGGACTTTTTCAATGGGAAGGAGCTTT GCAAGAGCATTAACCCGGATGAGGCTGTTGCTTATGGTGCTGCAGTTCAGGCTGCGATTTTGAGCGGTGAGGGCAATGAG AAAGTGCAGGATCTTCTCTTGCTTGATGTCACTCCACTTTCACTTGGATTGGAAACTGCTGGAGGGGTCATGACTGTGTT GATTCCCAGAAACACAACTATTCCCACCAAGAAGGAGCAAGTTTTTTCAACCTACTCTGATAACCAACCTGGTGTTTTGA TTCAGGTCTATGAAGGTGAACGAACAAGGACTCGTGATAACAATTTGCTTGGTAAATTTGAGCTCTCTGGAATCCCTCCA GCTCCAAGGGGTGTTCCACAAATCACTGTCTGCTTCGACATCGACGCGAATGGTATCTTGAATGTGTCCGCGGAGGACAA AACAACTGGACAGAAGAACAAGATCACAATTACAAACGACAAGGGGAGGCTTTCGAAGGAGGAGATTGAGAAGATGGTGC AGGAAGCTGAGAAGTACAAGTCCGAGGACGAGGAGCACAAGAAGAAAGTGGAGGCTAAGAATGCTCTGGAGAATTATGCC TACAACATGAGGAACACGATCAAGGATGATAAGATTGCTTCCAAGTTGTCAGCGGATGATAAGAAGAAGATTGAGGATGC GATTGACCAGGCTATCCAATGGCTCGATGGGAACCAACTTGCTGAGGCTGATGAATTTGAGGACAAGATGAAGGAGTTGG AGACCATTTGCAATCCCATCATTGCTAAGATGTACCAAGGTGCAGGTGCTGATGTGGGTGGTGGAGCCATGGATGAGGAT GGTCCTCCTGCTGGCAGTGGAAGTGGTGCTGGACCCAAGATTGAGGAAGTCGATTAA
CDS sequence (LotjaGi2g1v0372000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTAAAGGTGAAGGTCCGGCGATCGGAATCGATCTCGGAACGACGTACTCCTGCGTCGGCGTTTGGCAGCATGA TCGTGTTGAAATCATAGCTAACGATCAGGGTAACAGGACTACTCCGTCCTATGTCGCTTTCACAGATACTGAGCGGTTGA TCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCTACCAACACTGTTTTCGATGCTAAGCGTTTGATTGGAAGGAGG TTCAGCGATACTTCAGTGCAGGGTGACATGAAATTGTGGCCATTCAAGGTGATTCCAGGCCCTGCTGACAAGCCAATGAT TGGGGTGAATTACAAAGGAGAGGAGAAGCAGTTTTCTGCAGAGGAGATATCTTCAATGGTTCTCATGAAGATGAAGGAGA TTGCGGAGGCGTATCTTGGTACAACGATTAAGAACGCGGTGGTTACTGTGCCGGCTTACTTCAACGACTCTCAGAGGCAA GCTACCAAGGATGCTGGTGTGATTTCTGGGCTCAATGTGATGCGAATCATCAACGAGCCTACCGCGGCGGCGATTGCGTA TGGGCTTGATAAGAAAGCCACCAGCACCGGGGAGAAGAATGTTCTGATTTTCGATCTCGGTGGTGGGACTTTTGATGTTT CGCTTCTCACCATTGAGGAAGGTATCTTTGAGGTGAAATCCACTGCTGGTGATACTCATTTAGGGGGTGAGGATTTTGAT AACAGAATGGTGAACCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCCAGGGCTCTTAG GAGGTTGAGAACAGCTTGTGAGAGGGCCAAGAGGACTCTGTCATCCACTGCTCAAACCACCATTGAGATTGATTCGTTGT ATGAAGGAATTGACTTTTACACCACCATTACTCGTGCTAGATTTGAAGAGCTGAACATGGATTTGTTCAGGAAGTGTATG GAGCCTGTGGAGAAGTGTTTGAGGGATGCAAAGATGGACAAGAGTACAATCCATGATGTTGTTCTTGTTGGTGGGTCAAC AAGGATTCCCAAGGTTCAGCAGTTGTTGCAGGACTTTTTCAATGGGAAGGAGCTTTGCAAGAGCATTAACCCGGATGAGG CTGTTGCTTATGGTGCTGCAGTTCAGGCTGCGATTTTGAGCGGTGAGGGCAATGAGAAAGTGCAGGATCTTCTCTTGCTT GATGTCACTCCACTTTCACTTGGATTGGAAACTGCTGGAGGGGTCATGACTGTGTTGATTCCCAGAAACACAACTATTCC CACCAAGAAGGAGCAAGTTTTTTCAACCTACTCTGATAACCAACCTGGTGTTTTGATTCAGGTCTATGAAGGTGAACGAA CAAGGACTCGTGATAACAATTTGCTTGGTAAATTTGAGCTCTCTGGAATCCCTCCAGCTCCAAGGGGTGTTCCACAAATC ACTGTCTGCTTCGACATCGACGCGAATGGTATCTTGAATGTGTCCGCGGAGGACAAAACAACTGGACAGAAGAACAAGAT CACAATTACAAACGACAAGGGGAGGCTTTCGAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAGTACAAGTCCG AGGACGAGGAGCACAAGAAGAAAGTGGAGGCTAAGAATGCTCTGGAGAATTATGCCTACAACATGAGGAACACGATCAAG GATGATAAGATTGCTTCCAAGTTGTCAGCGGATGATAAGAAGAAGATTGAGGATGCGATTGACCAGGCTATCCAATGGCT CGATGGGAACCAACTTGCTGAGGCTGATGAATTTGAGGACAAGATGAAGGAGTTGGAGACCATTTGCAATCCCATCATTG CTAAGATGTACCAAGGTGCAGGTGCTGATGTGGGTGGTGGAGCCATGGATGAGGATGGTCCTCCTGCTGGCAGTGGAAGT GGTGCTGGACCCAAGATTGAGGAAGTCGATTAA
Protein sequence (LotjaGi2g1v0372000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR FSDTSVQGDMKLWPFKVIPGPADKPMIGVNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQ ATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFD NRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCM EPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIK DDKIASKLSADDKKKIEDAIDQAIQWLDGNQLAEADEFEDKMKELETICNPIIAKMYQGAGADVGGGAMDEDGPPAGSGS GAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 628 | 625 | 0.0 | – | |
PANTHER | 4 | 628 | 625 | 0.0 | ||
SUPERFAMILY | 8 | 191 | 184 | 3.37E-69 | ||
PRINTS | 8 | 21 | 14 | 9.4E-88 | – | |
Pfam | 9 | 618 | 610 | 1.3E-261 | ||
CDD | 9 | 387 | 379 | 0.0 | – | |
Gene3D | 10 | 384 | 375 | 1.2E-177 | – | |
ProSitePatterns | 12 | 19 | 8 | - | ||
PRINTS | 36 | 48 | 13 | 9.4E-88 | – | |
PRINTS | 58 | 66 | 9 | 9.4E-88 | – | |
Gene3D | 71 | 118 | 48 | 1.2E-177 | – | |
PRINTS | 146 | 166 | 21 | 9.4E-88 | – | |
Gene3D | 192 | 371 | 180 | 1.2E-177 | – | |
SUPERFAMILY | 196 | 388 | 193 | 3.12E-70 | ||
ProSitePatterns | 203 | 216 | 14 | - | ||
PRINTS | 209 | 219 | 11 | 9.4E-88 | – | |
Gene3D | 235 | 312 | 78 | 1.2E-177 | – | |
PRINTS | 337 | 353 | 17 | 9.4E-88 | – | |
ProSitePatterns | 340 | 354 | 15 | - | ||
PRINTS | 369 | 389 | 21 | 9.4E-88 | – | |
Gene3D | 387 | 515 | 129 | 2.9E-64 | ||
SUPERFAMILY | 392 | 549 | 158 | 3.4E-65 | ||
PRINTS | 396 | 415 | 20 | 9.4E-88 | – | |
PRINTS | 477 | 493 | 17 | 9.4E-88 | – | |
Gene3D | 516 | 619 | 104 | 8.7E-41 | ||
Coils | 521 | 541 | 21 | - | – | |
SUPERFAMILY | 543 | 622 | 80 | 8.24E-31 | ||
MobiDBLite | 621 | 650 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0372000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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