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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0372000 |
| Transcript ID | LotjaGi2g1v0372000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70 kDa heat shock protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|A0A0R4J4D6|A0A0R4J4D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0372000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86877506..86879268) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGTTTGATTTTGCGTGTGCAGATGCTAAGCGTTTGATTGGAAGGAGGTTCAGCGATACTTCAGTGCAGGGTGACATG AAATTGTGGCCATTCAAGGTGATTCCAGGCCCTGCTGACAAGCCAATGATTGGGGTGAATTACAAAGGAGAGGAGAAGCA GTTTTCTGCAGAGGAGATATCTTCAATGGTTCTCATGAAGATGAAGGAGATTGCGGAGGCGTATCTTGGTACAACGATTA AGAACGCGGTGGTTACTGTGCCGGCTTACTTCAACGACTCTCAGAGGCAAGCTACCAAGGATGCTGGTGTGATTTCTGGG CTCAATGTGATGCGAATCATCAACGAGCCTACCGCGGCGGCGATTGCGTATGGGCTTGATAAGAAAGCCACCAGCACCGG GGAGAAGAATGTTCTGATTTTCGATCTCGGTGGTGGGACTTTTGATGTTTCGCTTCTCACCATTGAGGAAGGTATCTTTG AGGTGAAATCCACTGCTGGTGATACTCATTTAGGGGGTGAGGATTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAG TTTAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCCAGGGCTCTTAGGAGGTTGAGAACAGCTTGTGAGAGGGCCAA GAGGACTCTGTCATCCACTGCTCAAACCACCATTGAGATTGATTCGTTGTATGAAGGAATTGACTTTTACACCACCATTA CTCGTGCTAGATTTGAAGAGCTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTTTGAGGGATGCA AAGATGGACAAGAGTACAATCCATGATGTTGTTCTTGTTGGTGGGTCAACAAGGATTCCCAAGGTTCAGCAGTTGTTGCA GGACTTTTTCAATGGGAAGGAGCTTTGCAAGAGCATTAACCCGGATGAGGCTGTTGCTTATGGTGCTGCAGTTCAGGCTG CGATTTTGAGCGGTGAGGGCAATGAGAAAGTGCAGGATCTTCTCTTGCTTGATGTCACTCCACTTTCACTTGGATTGGAA ACTGCTGGAGGGGTCATGACTGTGTTGATTCCCAGAAACACAACTATTCCCACCAAGAAGGAGCAAGTTTTTTCAACCTA CTCTGATAACCAACCTGGTGTTTTGATTCAGGTCTATGAAGGTGAACGAACAAGGACTCGTGATAACAATTTGCTTGGTA AATTTGAGCTCTCTGGAATCCCTCCAGCTCCAAGGGGTGTTCCACAAATCACTGTCTGCTTCGACATCGACGCGAATGGT ATCTTGAATGTGTCCGCGGAGGACAAAACAACTGGACAGAAGAACAAGATCACAATTACAAACGACAAGGGGAGGCTTTC GAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAGTACAAGTCCGAGGACGAGGAGCACAAGAAGAAAGTGGAGG CTAAGAATGCTCTGGAGAATTATGCCTACAACATGAGGAACACGATCAAGGATGATAAGATTGCTTCCAAGTTGTCAGCG GATGATAAGAAGAAGATTGAGGATGCGATTGACCAGGCTATCCAATGGCTCGATGGGAACCAACTTGCTGAGGCTGATGA ATTTGAGGACAAGATGAAGGAGTTGGAGACCATTTGCAATCCCATCATTGCTAAGATGTACCAAGGTGCAGGTGCTGATG TGGGTGGTGGAGCCATGGATGAGGATGGTCCTCCTGCTGGCAGTGGAAGTGGTGCTGGACCCAAGATTGAGGAAGTCGAT TAA
CDS sequence (LotjaGi2g1v0372000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTGTGGCCATTCAAGGTGATTCCAGGCCCTGCTGACAAGCCAATGATTGGGGTGAATTACAAAGGAGAGGAGAA GCAGTTTTCTGCAGAGGAGATATCTTCAATGGTTCTCATGAAGATGAAGGAGATTGCGGAGGCGTATCTTGGTACAACGA TTAAGAACGCGGTGGTTACTGTGCCGGCTTACTTCAACGACTCTCAGAGGCAAGCTACCAAGGATGCTGGTGTGATTTCT GGGCTCAATGTGATGCGAATCATCAACGAGCCTACCGCGGCGGCGATTGCGTATGGGCTTGATAAGAAAGCCACCAGCAC CGGGGAGAAGAATGTTCTGATTTTCGATCTCGGTGGTGGGACTTTTGATGTTTCGCTTCTCACCATTGAGGAAGGTATCT TTGAGGTGAAATCCACTGCTGGTGATACTCATTTAGGGGGTGAGGATTTTGATAACAGAATGGTGAACCATTTTGTTCAG GAGTTTAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCCAGGGCTCTTAGGAGGTTGAGAACAGCTTGTGAGAGGGC CAAGAGGACTCTGTCATCCACTGCTCAAACCACCATTGAGATTGATTCGTTGTATGAAGGAATTGACTTTTACACCACCA TTACTCGTGCTAGATTTGAAGAGCTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTTTGAGGGAT GCAAAGATGGACAAGAGTACAATCCATGATGTTGTTCTTGTTGGTGGGTCAACAAGGATTCCCAAGGTTCAGCAGTTGTT GCAGGACTTTTTCAATGGGAAGGAGCTTTGCAAGAGCATTAACCCGGATGAGGCTGTTGCTTATGGTGCTGCAGTTCAGG CTGCGATTTTGAGCGGTGAGGGCAATGAGAAAGTGCAGGATCTTCTCTTGCTTGATGTCACTCCACTTTCACTTGGATTG GAAACTGCTGGAGGGGTCATGACTGTGTTGATTCCCAGAAACACAACTATTCCCACCAAGAAGGAGCAAGTTTTTTCAAC CTACTCTGATAACCAACCTGGTGTTTTGATTCAGGTCTATGAAGGTGAACGAACAAGGACTCGTGATAACAATTTGCTTG GTAAATTTGAGCTCTCTGGAATCCCTCCAGCTCCAAGGGGTGTTCCACAAATCACTGTCTGCTTCGACATCGACGCGAAT GGTATCTTGAATGTGTCCGCGGAGGACAAAACAACTGGACAGAAGAACAAGATCACAATTACAAACGACAAGGGGAGGCT TTCGAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCTGAGAAGTACAAGTCCGAGGACGAGGAGCACAAGAAGAAAGTGG AGGCTAAGAATGCTCTGGAGAATTATGCCTACAACATGAGGAACACGATCAAGGATGATAAGATTGCTTCCAAGTTGTCA GCGGATGATAAGAAGAAGATTGAGGATGCGATTGACCAGGCTATCCAATGGCTCGATGGGAACCAACTTGCTGAGGCTGA TGAATTTGAGGACAAGATGAAGGAGTTGGAGACCATTTGCAATCCCATCATTGCTAAGATGTACCAAGGTGCAGGTGCTG ATGTGGGTGGTGGAGCCATGGATGAGGATGGTCCTCCTGCTGGCAGTGGAAGTGGTGCTGGACCCAAGATTGAGGAAGTC GATTAA
Protein sequence (LotjaGi2g1v0372000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLWPFKVIPGPADKPMIGVNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIS GLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ EFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRD AKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGL ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDAN GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLS ADDKKKIEDAIDQAIQWLDGNQLAEADEFEDKMKELETICNPIIAKMYQGAGADVGGGAMDEDGPPAGSGSGAGPKIEEV D
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 0.0 | ||
| Pfam | 1 | 529 | 529 | 1.1E-217 | ||
| Gene3D | 1 | 29 | 29 | 4.3E-136 | – | |
| PANTHER | 1 | 539 | 539 | 0.0 | – | |
| SUPERFAMILY | 2 | 102 | 101 | 3.24E-32 | ||
| Gene3D | 30 | 295 | 266 | 4.3E-136 | – | |
| PRINTS | 57 | 77 | 21 | 2.3E-65 | – | |
| Gene3D | 103 | 282 | 180 | 4.3E-136 | – | |
| SUPERFAMILY | 107 | 299 | 193 | 2.41E-70 | ||
| ProSitePatterns | 114 | 127 | 14 | - | ||
| PRINTS | 120 | 130 | 11 | 2.3E-65 | – | |
| Gene3D | 146 | 223 | 78 | 4.3E-136 | – | |
| PRINTS | 248 | 264 | 17 | 2.3E-65 | – | |
| ProSitePatterns | 251 | 265 | 15 | - | ||
| PRINTS | 280 | 300 | 21 | 2.3E-65 | – | |
| Gene3D | 298 | 426 | 129 | 2.2E-64 | ||
| SUPERFAMILY | 303 | 460 | 158 | 2.62E-65 | ||
| PRINTS | 307 | 326 | 20 | 2.3E-65 | – | |
| PRINTS | 388 | 404 | 17 | 2.3E-65 | – | |
| Gene3D | 427 | 530 | 104 | 6.9E-41 | ||
| Coils | 432 | 452 | 21 | - | – | |
| SUPERFAMILY | 454 | 533 | 80 | 6.67E-31 | ||
| MobiDBLite | 532 | 561 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0372000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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