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LotjaGi2g1v0389900.3

Overview

Field Value
Gene ID LotjaGi2g1v0389900
Transcript ID LotjaGi2g1v0389900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:88564183..88569053) extracted from Lotus japonicus Gifu genome v1.2.

AATGTGAGATTTAGCGTTCGCGAATCCGATGCAAAATTTCTCGCCCATGTCCTGACTTTTTCGTACATACACATGATTTG TGTCGGGTCCAACCGTCCTCCACATACTAGTGGAGTTAGCGTCGCAATACAACCGCCACTAACTTCCCCATGTAGGACGC CAACATGGTTGGTGATCTTCATGTGAGCAATAAAGGAAGATTAGGCCCAATGGTTGAGTTTGGCAATTCTTCATCAACTC AATTTTGATTTTTGACCGGTATGAAGCGAACACGATCCCAAACAAAACCCTATTCAAATCCAAACGATTCACTTTCCTCT TCCAAAATCTCCTTCCGCGCGCGAAAAATCCGACGAACCCCCCTCATCACCAACAAAAACCCTAACCCAGAACCAGAGAC TTCATCAAAACCCTCTCCCACCACCATCTCAAAGCCGTTAACCGCCACCGGCGAAATCGAAGCCGCCCTCAACCACCTCC GCGCCGCCGATCCCCTCTTAGCCAACTGCATCGACTCTCTCCCTCCTCCTCACTTCTCAAACGACGTCGTCGTCACCCCC TTCTTCTCCCTCACGAAGAGCATCATCTCCCAGCAACTCTCCAACAAAGCAGCCTCCGCCATCGAATCCCGCTTCGTCTC CCTCTGCGGCGGCCGCGATTCGGTTCTCCCCGACGTCGTTTTGTCCTTGTCTCCCGTTCAGCTCCGGCAGGTTGGAATCT CCGGACCCAAAGCGACTTACCTCCACGACCTCGCCACCAAGTACATCGATGGGATTCTCTCGGATTCTACTATCCTGCAA ATGGACGATGAGACGCTGCACGAGAAGCTTACCTTGGTTAAGGGAATTGGGCCTTGGTCTGTTCACATGTTCATGATTTT CACGCTTCACCGCCCTGATGTTCTTCCTGTTGGGGACCTCGTTGTTCGGAGAGGAGTGGAGCGATTGTATGGACTTAAGG CATTGCCTGCTCCTTCCCTGATGGAACGATTGTGCCAGAAATGGAAGCCTTATAGCTCTGTTGCCTCTTGCTACATGTAT AAGTTTATGGATGCTAAAGGGGTGTTGCCATTGCCAGCCACCACTATCACAGATCATCAACAGATGGGTTAGTTTTCTCA GGTTCTAACCTTTTGCTTGTGTTAAGATTATTGTTCTGTATTCAGTATTACTATTTAGTGGTTAGTCAACTTGAATTGGG TATTCACCAATTCTGTAGCTGAATGTGGGCAGTGCATTTATCTTATTAGGTTGGGATAGAAGTGATTGCTGATTATGGGA GATTAGTTTTTGAAAGTATTAAATTTATTTTATGTTGATTTGCACTTGCTTGTCTGGGAAGGATAACTTGTTACTGGAAA TGTTGTGTGTGGTTGGATTGGAGAAGATTCATGTTTAACAATGAACCGAAGAATAAGTACTTTTAGTTAGATGAATGGAA ATCCAACCTCATGCACTTATAGATTTGGTTTTATTTTGTGTATGGCTGTGTGATTTTTGGACTGATGTGAAACTAGTCAT GACAATGCTATATAAGCACTGCTATGAACACAGATGCATAGATTTTTGACAGGGCCTTGCTGAGATATTAGCATCTTTTG TGGCATTGGATTGCTTCTTATTGGCTTGTGGGTTTTATTTTATTAGGTGGTGGGGAGTGATCCTCTTACTGTGACAAATA AAGGGACGGATGTAGATAAGAATTCTCCTCAGATGGCAAGTGAGATCTTCTCTATTCCCATTGCTGTCCTATGTCAAGAT TGTAATGGTGGGATAGAGATTCAGACACATTTTGAGGACATAAGATTTCAACGCAGAGGTTTGTTTGTTTGGAAACATGG AGAATGAGACACAATTCTTAAACTAGTTTCTTTGTTTGGAAACTATTACTACTTTTGATATGTAATGTGGTGAGCAGGAG TTCTATTATACGAAGTGTTTAGTTAGTGAGGATTAATTCTAAAGAGTAAAGATGTAGACGGATACCAGCTGTATGCTGCC ATGGTTAAAAGAAACTACATAGTGAAATGATAATGGAGAGGACATCTCATCTCATGAATTTCAATCTAAATTTTCTGTCA TCCTAGATTGACATAAAATTCCATTTCAAATTAAAAAAAAAAAGAAATAGAAGCATCATCATGAAAAGATTAAATTGACC TAAACCTCCATTTCAACCCATTTTCCATCTGTAATTATCCACCTTCCATGGCACATCTATCTATCTACTACTTGTTATTT GTGAGTTTACTTTACACTGTAGCTAAAAGACCTCCAATGGTGTTTCGCCACGTGTACCGCTTTTTGTTATTTTTTCAAAT TTTGTTTTATTTTTTAGCTGGAATCTATTACTCTAGATCTGACGATCCACATTCCCCATCTATAAATGACCATGATGATA GTTTTCAATAAGATTTAATCTAGGCCGTTGAAACTTAAAAAACTTTTGGTGAACCTCTCTCCTGCTTGCTTCGTCCTCTC TTTCACGTGGGTATCCTATCAGCGTCGCTCTTCTCCTTGATCTCCGGCGTATTCCATGGCTTCTCCGGCGGTATTAGTCA CATCCCGCCATCAACCATTACATCGGTAAGTCGTAACTAAGTCATCCTTCCATTATCAAATTTTCTCACACGCAACCTCA AACGTCAGTTTCCGTTCGTTATAACAGTAGGAGTGGTTGAGAGAAAGAAATCTCCTCCACGATTGCAGACGCCATTTTCG CCTCCCTCCCTTGATTTTCTCTCATCTTTCGTCTTCCTTTCATCATTCACGATCTGGTAATTTAATTGAATATAAAGATT TATTGATTTATTTCCTTTCTCACTCAAGTCCTCCTTGATTTACTCCCCAACTCCTCTCTCAGCAAACTCCTCTCTATTCC AATTTTTTTTTTAATTGTATGATTGACTGATGGGGTTGCCATTAATGTTTGGGTTGGGGGAAATGTAATTTTTTTCTTCA TTGTATGTCAGCATACGTATTTGTTTAGTAGGTGTTGTCAATTCATCTCTGATTTTGCTGAAAACCACCAATACGACACT ATTGAAAGGAGTTCCCTCATCTTCATATATGTTGTTTTCTATAAATAAGCACTCCTTGCTAATCTTTTCTCACATTCAGC TACCTGTCATTTGTGTTGAGATAGATATGTTAGGATTTTTTTGTGCTTTTGTTCTTGCATATCTTATCTTAATACCGATA TCAATGTCTCATTTAGCTGGAACTAACAGTAGATTGAAAACTCTTTGTGGTGGAAGGGATACATGGAGGATTAAAGTAAG AGTCATTCGAGTATGGGAGATGTGCCCAGTTTCTGAACCATCAAAACCATATGCAATGAGTTTGCAGTAGAAATAGTGCA GCCAAGCATATGACAAGATAAACTGTCTACCCTTTTAATTTTCAGCACTGGGGCTTATACCAGTTTTATAATTTTCTTTC AATTTGAATGTATTGATTGTGTTTTATTCAAGATTGCATTTTTGTTCACTAGCAACTACGAGACAGGACTGTCAAAAAAA AAATACTACGAGACAGTGTCCTCTTATGGTGAGTTATGTCACCTTTTGCAGTAATATGTGTTGTATTTGAATTTGAAATC CATTATCACAAATGCATAAATAGGGGTGTGTTTCAGTTGCTACTTGCATTCATCTCAGTATCTGGGTTTTGTTGTAGTGT TTCAAGCTTTCTGTTTTGATCTGCATCAATTGTTGATAATTCTGGACAGGTGAACCCAGGAGTTTATGTCGAGGCTAGGA ACAGGAGAAATATCATATTGAACCGAAAAATTTGCAAAAGCTGAAGTATTTCAAACTTCAAACCCACCATGGTTAGTTGA ATTCCATTTTGGTTTTGATCTTTTTTTTTCTAATGCTTTTATTTTGATGAACCGTGTATTGTAAAATGTTACATAATTAC ATTGTTGAGGTTAGAGCAATGGGTTCATATTAAGAGGGTAAACTTTTTACAAAATGTAATAATTTGTGTCCATAAGGAGA TAAGGAAATAATAATATAAGAAAATTAATATGCATAGAAAAGGAAATTGTTTATATCCGCATTCATTTTTGAATTTTTTC TCAGTGACTATGGATTTATATTAACATTGGATCATGAATTGTCATAGGTCTTCCCATTGGAAATTGGATTTCTTATTGTC TTTTTAAAACCATTTCTTTTTTATTGGATGAATTAACTGATCTGGTTTTGTCTCACAGATTACTGACATACGACAACGTC AGTATGAGAAGATTGGAATCGGAAGCAGTTACTTTTTTAGACTTGATGGTGGTAGCATGGTTAGTACCTAAGTAGAGTAA TATGTAAATTTTAGATTTTGAAAGTTTGAAGTCTAAGATTTTTGTTTTTCGTTTGTGGGGGATGTGTCCTATTGGTGATT CCTCAAAACTATGCTATGCATCTCGTCCTAAATGATGCAGAGGTTATATTTTTGGCATGTTATTGTTTTATAGTTTTCTG TCCTACAATTACTACATTCATTTACAGGGTGTGAAAATTGAGGCTTCCATCAAGAAAAATCACATTAGTAAATACGTAAG TGACTTGGCTGAAAATTGATTTGGATCTTTTTTTTTCCTTGCTGCATTTTCACATGCTGAAATACATGGGAGTACAGGAA AATAACGAGAGAAGGTATTCTCTTCAATGTGTTTATTTAGTTGGAATTGCCTATAAATACTGCAAGAATTGTTTTGTTAA TTCTCATTCCATCTTGCATTGCACTAGAATTTAATCATTCCTGTCTCTCATATTCCATCCTTTCATTTGTTTGTCATGAT TTATATGATTTATTAGAACTGAAACAAAATCAATGGCATCAAGGGGGTTGGGATTGGTGGTCTAGCTTGCT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0389900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCGAACACGATCCCAAACAAAACCCTATTCAAATCCAAACGATTCACTTTCCTCTTCCAAAATCTCCTTCCGCGC GCGAAAAATCCGACGAACCCCCCTCATCACCAACAAAAACCCTAACCCAGAACCAGAGACTTCATCAAAACCCTCTCCCA CCACCATCTCAAAGCCGTTAACCGCCACCGGCGAAATCGAAGCCGCCCTCAACCACCTCCGCGCCGCCGATCCCCTCTTA GCCAACTGCATCGACTCTCTCCCTCCTCCTCACTTCTCAAACGACGTCGTCGTCACCCCCTTCTTCTCCCTCACGAAGAG CATCATCTCCCAGCAACTCTCCAACAAAGCAGCCTCCGCCATCGAATCCCGCTTCGTCTCCCTCTGCGGCGGCCGCGATT CGGTTCTCCCCGACGTCGTTTTGTCCTTGTCTCCCGTTCAGCTCCGGCAGGTTGGAATCTCCGGACCCAAAGCGACTTAC CTCCACGACCTCGCCACCAAGTACATCGATGGGATTCTCTCGGATTCTACTATCCTGCAAATGGACGATGAGACGCTGCA CGAGAAGCTTACCTTGGTTAAGGGAATTGGGCCTTGGTCTGTTCACATGTTCATGATTTTCACGCTTCACCGCCCTGATG TTCTTCCTGTTGGGGACCTCGTTGTTCGGAGAGGAGTGGAGCGATTGTATGGACTTAAGGCATTGCCTGCTCCTTCCCTG ATGGAACGATTGTGCCAGAAATGGAAGCCTTATAGCTCTGTTGCCTCTTGCTACATGTATAAGTTTATGGATGCTAAAGG GGTGTTGCCATTGCCAGCCACCACTATCACAGATCATCAACAGATGGGTGGTGGGGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0389900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRTRSQTKPYSNPNDSLSSSKISFRARKIRRTPLITNKNPNPEPETSSKPSPTTISKPLTATGEIEAALNHLRAADPLL ANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIESRFVSLCGGRDSVLPDVVLSLSPVQLRQVGISGPKATY LHDLATKYIDGILSDSTILQMDDETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSL MERLCQKWKPYSSVASCYMYKFMDAKGVLPLPATTITDHQQMGGGE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 58 58 - –
MobiDBLite
mobidb-lite
7 24 18 - –
PANTHER
PTHR43003:SF8
9 272 264 2.2E-114 –
PANTHER
PTHR43003
9 272 264 2.2E-114 –
MobiDBLite
mobidb-lite
35 58 24 - –
Gene3D
G3DSA:1.10.1670.40
71 261 191 3.1E-63 –
Gene3D
G3DSA:1.10.340.30
97 211 115 3.1E-63 –
SUPERFAMILY
SSF48150
98 260 163 1.03E-33
IPR011257
CDD
cd00056
104 262 159 1.57467E-27
IPR003265
Pfam
PF00730
106 250 145 1.6E-18
IPR003265
SMART
SM00478
109 264 156 1.5E-6
IPR003265

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of
GO:0006284
Biological process Base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0389900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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