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PF00730

Source: Pfam

Description

HhH-GPD superfamily base excision DNA repair protein

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006284
Biological process Base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
Subterm of

Associated Lotus transcripts 24

Transcript Name Description Predicted domains Domain count
Lj0g3v0121289.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
Domains
8
Lj0g3v0134359.1
– PREDICTED: N-glycosylase/DNA lyase OGG1-like isoform X1 [Cicer arietinum] gi|502135915|ref|XP_004502497.1|
Domains
13
Lj0g3v0207679.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
Domains
6
Lj0g3v0257719.1
– DNA glycosylase superfamily protein [Arabidopsis thaliana] gi|42572315|ref|NP_974253.1|
Domains
7
Lj3g3v2389760.1
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1|
Domains
12
Lj3g3v2389760.2
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502157006|ref|XP_004510726.1|
Domains
17
Lj3g3v2389760.3
– PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1|
Domains
17
Lj3g3v3302770.1
– PREDICTED: endonuclease III-like protein 1-like [Cicer arietinum] gi|502148937|ref|XP_004507328.1|
Domains
23
Lj4g3v0071130.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508778582|gb|EOY25838.1|
Domains
8
Lj5g3v2298120.1
– PREDICTED: DNA-3-methyladenine glycosylase 1-like isoform X1 [Cicer arietinum] gi|502131517|ref|XP_004501010.1|
Domains
12
LotjaGi1g1v0263300.1
– N-glycosylase/DNA lyase; TAIR: AT1G21710.1 8-oxoguanine-DNA glycosylase 1; Swiss-Prot: sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1; TrEMBL-Plants: tr|A0A0S3RDM0|A0A0S3RDM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263300
Domains
17
LotjaGi1g1v0419500.1
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G19480.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1; TrEMBL-Plants: tr|I1JTA6|I1JTA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0419500
Domains
11
LotjaGi2g1v0026200_LC.1
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|V4SJG7|V4SJG7_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0026200_LC
Domains
9
LotjaGi2g1v0026300_LC.1
– Photosystem II CP47 reaction center protein; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|K7LYE7|K7LYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0026300_LC
Domains
7
LotjaGi2g1v0026500_LC.3
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|W9QY11|W9QY11_9ROSA Methyl-CpG-binding domain protein 4; Found in the gene: LotjaGi2g1v0026500_LC
Domains
7
LotjaGi2g1v0026500_LC.4
– Methyl-CpG-binding domain protein 4; TAIR: AT3G07930.3 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q0IGK1|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein; TrEMBL-Plants: tr|A0A151SQL7|A0A151SQL7_CAJCA Methyl-CpG-binding domain protein 4; Found in the gene: LotjaGi2g1v0026500_LC
Domains
7
LotjaGi2g1v0389900.1
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
Domains
11
LotjaGi2g1v0389900.2
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
Domains
11
LotjaGi2g1v0389900.3
– DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900
Domains
11
LotjaGi3g1v0391200.2
– A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|K7KZX6|K7KZX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200
Domains
18
LotjaGi3g1v0391200.3
– A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|A0A0R0J018|A0A0R0J018_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200
Domains
18
LotjaGi3g1v0497800.1
– Endonuclease III homolog; TAIR: AT2G31450.2 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q9SIC4|NTH1_ARATH Endonuclease III homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9V790|A0A0L9V790_PHAAN Endonuclease III homolog; Found in the gene: LotjaGi3g1v0497800
Domains
21
LotjaGi4g1v0237800.1
– DNA glycosylase; TAIR: AT3G47830.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830; TrEMBL-Plants: tr|A0A151QT39|A0A151QT39_CAJCA Protein ROS1; Found in the gene: LotjaGi4g1v0237800
Domains
12
LotjaGi6g1v0277400.1
– DNA glycosylase; TAIR: AT4G26030.1 C2H2-like zinc finger protein; Swiss-Prot: sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP; TrEMBL-Plants: tr|A0A0B2S7Q6|A0A0B2S7Q6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0277400
Domains
7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 4.17